VFG110
Library VF
(Link to library)
Clone ID VFG110
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16605-1
Original site URL
Representative seq. ID VFG110P
(Link to Original site)
Representative DNA sequence
>VFG110 (VFG110Q) /CSM/VF/VFG1-A/VFG110Q.Seq.d/
ACCATCAATTAAATATATATATACTAAAAATGAGAGTTTTATCATTCCTTTGTTTATTAT
TAGTTAGCTACGCTTCTGCTAAACAACAATTCTCTGAATTACAATACAGAAATGCTTTCA
CCAACTGGATGCAAGCTCACCAAAGAACTTATTCCTCTGAAGAATTTAATGCTCGTTATC
AAATCTTCAAATCCAATATGGATTATGTACACCAATGGAATTCAAAAGGTGGTGAAACCG
TTTTGGGTTTAAATGTTTTCGCTGATATTACCAACCAAGAATATAGAACTACCTACTTGG
GTACCCCATTCGATGGTTCAGCCCTCATTGGTACTGAAGAAGAGAAAATCTTCTCCACCC
CAGCCCCAACTGTTGATTGGAGAGCTCAAGGTGCTGTCACACCAATTAAAAATCAAGGTC
AATGTGGTGGCTGCTGGTCATTCTCAACCACTGGTTCAACTGAAGGTGCTCACTTTATTG
CATCTGGAACAAAAAAAGATTTAGTTTCATTATCTGAACAAAACTTGATCGATTGTTCAA
AATCATACGGTAACAATGGTTGTGAAXXXXXXXXXXAAATTATATGAATCAGGTATCTAC
TATGAACCAGCATGTTCTCCAACCCAACTTGATCATGGTGTTTTAGTTGTTGGTTATGGT
TCAGGTTCAAGTTCATCATCTGGTTCATCATCTGGTAAATCATCATCATCATCATCAACT
GGTGGTAAAACTTCATCCTCATCATCATCAGGTAAAGCTTCATCATCATCATCAGGCAAA
GCTTCATCATCATCATCATCAGGTAAAACTTCATCTGCTGCTTCATCAACCTCTGGTTCT
CAATCAGGTTCCCAATCAGGTAGCCAATCAGGCCAATCCACCGGTTCACAATCAGGTCAA
ACCTCTGCTTCTGGTCAAGCATCAGCATCAGGTTCTGGTTCTGGCTCAGGTTCAGGTTCA
GGTTCAGGTTCAGGCTCAGGTGCTGTTGAGGCCTCATCTGGTAACTACTGGATCGTTAAA
AACTCATGGGGTACTTCATGGGGTATGGATGGTTACATTTTTATGAGCAAAGATAGAAAT
AACAATTGTGGTATCGCAACAATGGCTTCTTTCCCAACTGCCTCATCAAATTAAAATTTT
ATTTTTAATTGTCCGACTAACATTAATTTATTTGTAATAAATAAAAAAAATAAAAATAAA
AAATAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
HQLNIYILKMRVLSFLCLLLVSYASAKQQFSELQYRNAFTNWMQAHQRTYSSEEFNARYQ
IFKSNMDYVHQWNSKGGETVLGLNVFADITNQEYRTTYLGTPFDGSALIGTEEEKIFSTP
APTVDWRAQGAVTPIKNQGQCGGCWSFSTTGSTEGAHFIASGTKKDLVSLSEQNLIDCSK
SYGNNGCE---

---KLYESGIYYEPACSPTQLDHGVLVVGYGSGSSSSSGSSSGKSSSSSSTGGKTSSSSS
SGKASSSSSGKASSSSSSGKTSSAASSTSGSQSGSQSGSQSGQSTGSQSGQTSASGQASA
SGSGSGSGSGSGSGSGSGAVEASSGNYWIVKNSWGTSWGMDGYIFMSKDRNNNCGIATMA
SFPTASSN*nfifncptninlfvinkknknkk*


Translated Amino Acid sequence (All Frames)
Frame A:
tin*iyiy*k*efyhsfvyy*latlllnnnslnyntemlsptgckltkeliplknlmlvi
kssnpiwimytngiqkvvkpfwv*mfslilptknielptwvphsmvqpslvlkkrksspp
qpqlligelkvlshqlkikvnvvaaghsqplvqlkvltllhleqkki*fhylnkt*sivq
nhtvtmvv---

---KLYESGIYYEPACSPTQLDHGVLVVGYGSGSSSSSGSSSGKSSSSSSTGGKTSSSSS
SGKASSSSSGKASSSSSSGKTSSAASSTSGSQSGSQSGSQSGQSTGSQSGQTSASGQASA
SGSGSGSGSGSGSGSGSGAVEASSGNYWIVKNSWGTSWGMDGYIFMSKDRNNNCGIATMA
SFPTASSN*nfifncptninlfvinkknknkk*

Frame B:
psikyiytknesfiiplfiis*lrfc*ttil*itiqkcfhqldasspknlfl*ri*csls
nlqiqyglctpmefkrw*nrfgfkcfr*yyqpri*nyllgypirwfsphwy*rrenllhp
spnc*lessrcchtn*ksrsmwwllvilnhwfn*rcslyciwnkkrfsfii*tkldrlfk
iir*qwl*---

---nymnqvstmnqhvlqpnlimvf*llvmvqvqvhhlvhhlvnhhhhhqlvvklhphhh
qvklhhhhqaklhhhhhqvklhlllhqplvlnqvpnqvanqanppvhnqvkplllvkhqh
qvlvlaqvqvqvqvqaqvllrphlvttgslkthgvlhgvwmvtfl*akieitivvsqqwl
lsqlphqikilflivrltliyl**ikkikiknk

Frame C:
HQLNIYILKMRVLSFLCLLLVSYASAKQQFSELQYRNAFTNWMQAHQRTYSSEEFNARYQ
IFKSNMDYVHQWNSKGGETVLGLNVFADITNQEYRTTYLGTPFDGSALIGTEEEKIFSTP
APTVDWRAQGAVTPIKNQGQCGGCWSFSTTGSTEGAHFIASGTKKDLVSLSEQNLIDCSK
SYGNNGCE---

---ii*iryll*tsmfsnpt*swcfscwlwfrfkfiiwfiiw*iiiiiinww*nfiliii
r*sfiiiirqsfiiiiir*nficcfinlwfsirfpir*pirpihrftirsnlcfwssisi
rfwfwlrfrfrfrfrlrcc*gliw*lldr*klmgyfmgygwlhfyeqr*k*qlwyrnngf
fpncliklkfyf*lsd*h*ficnk*kk*k*ki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFG110 (VFG110Q) /CSM/VF/VFG1-A/VFG110Q.Seq.d/ 1227 0.0
VFO306 (VFO306Q) /CSM/VF/VFO3-A/VFO306Q.Seq.d/ 1080 0.0
VFK619 (VFK619Q) /CSM/VF/VFK6-A/VFK619Q.Seq.d/ 1080 0.0
VFK133 (VFK133Q) /CSM/VF/VFK1-B/VFK133Q.Seq.d/ 1080 0.0
VFF738 (VFF738Q) /CSM/VF/VFF7-B/VFF738Q.Seq.d/ 1080 0.0
VFF440 (VFF440Q) /CSM/VF/VFF4-B/VFF440Q.Seq.d/ 1080 0.0
VFB673 (VFB673Q) /CSM/VF/VFB6-D/VFB673Q.Seq.d/ 1080 0.0
VFM544 (VFM544Q) /CSM/VF/VFM5-B/VFM544Q.Seq.d/ 1076 0.0
VFM320 (VFM320Q) /CSM/VF/VFM3-A/VFM320Q.Seq.d/ 1076 0.0
VFK603 (VFK603Q) /CSM/VF/VFK6-A/VFK603Q.Seq.d/ 1076 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 922 0.0 6
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds. 131 e-121 8
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds. 121 e-121 8
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 121 e-110 11
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds. 115 e-101 7
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 76 1e-46 6
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 74 2e-40 8
X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1. 70 1e-18 3
AJ517568|AJ517568.1 Dreissena polymorpha EST, clone atrado65. 68 3e-07 1
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read. 66 1e-06 1
dna update 2003. 9.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot... 374 e-102
(Q94504) RecName: Full=Cysteine proteinase 7; EC=3.4.22... 288 2e-76
(Q94503) RecName: Full=Cysteine proteinase 6; EC=3.4.22... 279 1e-73
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 278 4e-73
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 271 3e-71
(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 199 2e-49
EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ... 167 9e-40
AC117076_20(AC117076|pid:none) Dictyostelium discoideum chromoso... 152 2e-35
AK226753_1(AK226753|pid:none) Arabidopsis thaliana mRNA for papa... 139 3e-31
AC000132_24(AC000132|pid:none) Sequence of BAC F21M12 from Arabi... 139 3e-31
protein update 2009. 6.20
PSORT

psg: 0.96 gvh: 0.87 alm: 0.52 top: 0.37 tms: 0.00 mit: 0.33 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: extracellular, including cell wall
8.0 %: mitochondrial
8.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: Golgi

>> prediction for VFG110 is exc

5' end seq. ID VFG110F
5' end seq.
>VFG110F.Seq
ACCATCAATTAAATATATATATACTAAAAATGAGAGTTTTATCATTCCTTTGTTTATTAT
TAGTTAGCTACGCTTCTGCTAAACAACAATTCTCTGAATTACAATACAGAAATGCTTTCA
CCAACTGGATGCAAGCTCACCAAAGAACTTATTCCTCTGAAGAATTTAATGCTCGTTATC
AAATCTTCAAATCCAATATGGATTATGTACACCAATGGAATTCAAAAGGTGGTGAAACCG
TTTTGGGTTTAAATGTTTTCGCTGATATTACCAACCAAGAATATAGAACTACCTACTTGG
GTACCCCATTCGATGGTTCAGCCCTCATTGGTACTGAAGAAGAGAAAATCTTCTCCACCC
CAGCCCCAACTGTTGATTGGAGAGCTCAAGGTGCTGTCACACCAATTAAAAATCAAGGTC
AATGTGGTGGCTGCTGGTCATTCTCAACCACTGGTTCAACTGAAGGTGCTCACTTTATTG
CATCTGGAACAAAAAAAGATTTAGTTTCATTATCTGAACAAAACTTGATCGATTGTTCAA
AATCATACGGTAACAATGGTTGTGAA----------
Length of 5' end seq. 566
3' end seq. ID VFG110Z
3' end seq.
>VFG110Z.Seq
----------AAATTATATGAATCAGGTATCTACTATGAACCAGCATGTTCTCCAACCCA
ACTTGATCATGGTGTTTTAGTTGTTGGTTATGGTTCAGGTTCAAGTTCATCATCTGGTTC
ATCATCTGGTAAATCATCATCATCATCATCAACTGGTGGTAAAACTTCATCCTCATCATC
ATCAGGTAAAGCTTCATCATCATCATCAGGCAAAGCTTCATCATCATCATCATCAGGTAA
AACTTCATCTGCTGCTTCATCAACCTCTGGTTCTCAATCAGGTTCCCAATCAGGTAGCCA
ATCAGGCCAATCCACCGGTTCACAATCAGGTCAAACCTCTGCTTCTGGTCAAGCATCAGC
ATCAGGTTCTGGTTCTGGCTCAGGTTCAGGTTCAGGTTCAGGTTCAGGCTCAGGTGCTGT
TGAGGCCTCATCTGGTAACTACTGGATCGTTAAAAACTCATGGGGTACTTCATGGGGTAT
GGATGGTTACATTTTTATGAGCAAAGATAGAAATAACAATTGTGGTATCGCAACAATGGC
TTCTTTCCCAACTGCCTCATCAAATTAAAATTTTATTTTTAATTGTCCGACTAACATTAA
TTTATTTGTAATAAATAAAAAAAATAAAAATAAAAAATAAA
Length of 3' end seq. 631
Connected seq. ID VFG110P
Connected seq.
>VFG110P.Seq
ACCATCAATTAAATATATATATACTAAAAATGAGAGTTTTATCATTCCTTTGTTTATTAT
TAGTTAGCTACGCTTCTGCTAAACAACAATTCTCTGAATTACAATACAGAAATGCTTTCA
CCAACTGGATGCAAGCTCACCAAAGAACTTATTCCTCTGAAGAATTTAATGCTCGTTATC
AAATCTTCAAATCCAATATGGATTATGTACACCAATGGAATTCAAAAGGTGGTGAAACCG
TTTTGGGTTTAAATGTTTTCGCTGATATTACCAACCAAGAATATAGAACTACCTACTTGG
GTACCCCATTCGATGGTTCAGCCCTCATTGGTACTGAAGAAGAGAAAATCTTCTCCACCC
CAGCCCCAACTGTTGATTGGAGAGCTCAAGGTGCTGTCACACCAATTAAAAATCAAGGTC
AATGTGGTGGCTGCTGGTCATTCTCAACCACTGGTTCAACTGAAGGTGCTCACTTTATTG
CATCTGGAACAAAAAAAGATTTAGTTTCATTATCTGAACAAAACTTGATCGATTGTTCAA
AATCATACGGTAACAATGGTTGTGAA----------AAATTATATGAATCAGGTATCTAC
TATGAACCAGCATGTTCTCCAACCCAACTTGATCATGGTGTTTTAGTTGTTGGTTATGGT
TCAGGTTCAAGTTCATCATCTGGTTCATCATCTGGTAAATCATCATCATCATCATCAACT
GGTGGTAAAACTTCATCCTCATCATCATCAGGTAAAGCTTCATCATCATCATCAGGCAAA
GCTTCATCATCATCATCATCAGGTAAAACTTCATCTGCTGCTTCATCAACCTCTGGTTCT
CAATCAGGTTCCCAATCAGGTAGCCAATCAGGCCAATCCACCGGTTCACAATCAGGTCAA
ACCTCTGCTTCTGGTCAAGCATCAGCATCAGGTTCTGGTTCTGGCTCAGGTTCAGGTTCA
GGTTCAGGTTCAGGCTCAGGTGCTGTTGAGGCCTCATCTGGTAACTACTGGATCGTTAAA
AACTCATGGGGTACTTCATGGGGTATGGATGGTTACATTTTTATGAGCAAAGATAGAAAT
AACAATTGTGGTATCGCAACAATGGCTTCTTTCCCAACTGCCTCATCAAATTAAAATTTT
ATTTTTAATTGTCCGACTAACATTAATTTATTTGTAATAAATAAAAAAAATAAAAATAAA
AAATAAA
Length of connected seq. 1197
Full length Seq ID -
Full length Seq. -
Length of full length seq. -