VFF806
Library VF
(Link to library)
Clone ID VFF806
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15456-1
Original site URL
Representative seq. ID VFF806P
(Link to Original site)
Representative DNA sequence
>VFF806 (VFF806Q) /CSM/VF/VFF8-A/VFF806Q.Seq.d/
AATTGTCACCTGACTTACATAAAAGAAAATGAAATTACTTATTTTAACTTTATTTTTAGC
TACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGA
ATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTAC
CACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTAC
CCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATC
AAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGC
CTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTAT
GTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATT
ATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTTCGCCAAATTCGATGGTAT
TTTAGGXXXXXXXXXXTTGCTTTCCAATCCATCTCTGTTAATTCAATTCCACCAGTCTTT
TACAACATGTTATCACAAGGTTTAGTTTCATCAACACTCTTCTCCTTCTGGTTATCAAGA
ACTCCAGGTGCCAACGGTGGTGAACTCTCATTCGGTTCAATCGATAACACCAAATACACT
GGTGACATTACCTACGTCCCATTAACCAACGAAACCTATTGGGGATTCGTTATGGATGAC
TTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGAT
TCAGGTACATCACTCATTGCTGGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTA
GGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTA
CCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTT
TTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTA
AACATGGGAAATTTCTGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTC
GATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCATTCAAGGTTAAATTTTTTTAATT
AATTTATATTTAAGNATAGAAATAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
ivt*lt*KKMKLLILTLFLATIVLAQALTVPLNFHQASRESRRRVPQKWSNRLSALNAGT
TIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGA
SSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDFAKFDGI
L---

---AFQSISVNSIPPVFYNMLSQGLVSSTLFSFWLSRTPGANGGELSFGSIDNTKYTGDI
TYVPLTNETYWGFVMDDFAIDGQSAGFCGTTCHAICDSGTSLIAGPMADITALNEKLGAV
ILNGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIELNMG
NFWILGDVFISAYYTVFDFGNKQVGFATAIQG*iflinlylxieik


Translated Amino Acid sequence (All Frames)
Frame A:
nchltyikeneityfnfifsyycfsssfnstiklpssfkri*kksstkmvkqiicsqcwy
hnpnfrf*rcsilwchyhwyprsslqssfrywfiqlvdsikemsnhcccm*ft*qi*qrc
lkhicrqrn*fhhpir*wcyvrfclsrfrhcwfinc*rsiir*shcrtrycfrfrqirwy
fr---

---llsnpslliqfhqsfttcyhkv*fhqhsspsgyqelqvptvvnshsvqsitpntlvt
lptsh*ptkpigdslwmtllsmvnqlvsvvllvtqfaiqvhhsllvqwlillpsmkn*vl
ss*mvkvsslivalstpyqmlpspllvvnlf*lqkntf*kllsserlnv*vdlwvss*tw
eisgslvmfsslltilysilvinklvsqlpfkvkff*liyi*x*k*n

Frame B:
ivt*lt*KKMKLLILTLFLATIVLAQALTVPLNFHQASRESRRRVPQKWSNRLSALNAGT
TIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGA
SSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDFAKFDGI
L---

---cfpihlc*fnstsllqhvitrfsfintllllviknsrcqrw*tlirfnr*hqihw*h
ylrpinqrnllgiryg*lcyrwsiswflwyylsrnlrfryithcwsng*yycpq*kircc
hlkw*rcll*l*ryqhltkcyhhrcws*icfnskrirfrsy*vrkd*mfewiygyrvkhg
kfldpw*cfhlcllycirfw**tswfrnchsrlnffn*fifkxrnk

Frame C:
lspdlhkrk*nylf*lyf*lllf*lkl*qyh*tsiklqenleeefhkngqtdyllsmlvp
qsqfqilkmlntmvplplvpqvkpsk*fsilvhptcgfhqrnvqslllhviyitnitavp
qahmsptelispsntvvvlcqvlslkipsllvh*llkinyslkplpnqvllsispnsmvf
*---

---AFQSISVNSIPPVFYNMLSQGLVSSTLFSFWLSRTPGANGGELSFGSIDNTKYTGDI
TYVPLTNETYWGFVMDDFAIDGQSAGFCGTTCHAICDSGTSLIAGPMADITALNEKLGAV
ILNGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIELNMG
NFWILGDVFISAYYTVFDFGNKQVGFATAIQG*iflinlylxieik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFF806 (VFF806Q) /CSM/VF/VFF8-A/VFF806Q.Seq.d/ 2327 0.0
VFN222 (VFN222Q) /CSM/VF/VFN2-A/VFN222Q.Seq.d/ 2309 0.0
VFL385 (VFL385Q) /CSM/VF/VFL3-D/VFL385Q.Seq.d/ 2309 0.0
VFF495 (VFF495Q) /CSM/VF/VFF4-D/VFF495Q.Seq.d/ 2309 0.0
VFE221 (VFE221Q) /CSM/VF/VFE2-A/VFE221Q.Seq.d/ 2309 0.0
VFE162 (VFE162Q) /CSM/VF/VFE1-C/VFE162Q.Seq.d/ 2309 0.0
VFD884 (VFD884Q) /CSM/VF/VFD8-D/VFD884Q.Seq.d/ 2309 0.0
VFD841 (VFD841Q) /CSM/VF/VFD8-B/VFD841Q.Seq.d/ 2309 0.0
VFE438 (VFE438Q) /CSM/VF/VFE4-B/VFE438Q.Seq.d/ 2296 0.0
VFG570 (VFG570Q) /CSM/VF/VFG5-C/VFG570Q.Seq.d/ 2270 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Y16962|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D. 1247 0.0 3
AJ243946|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2. 1247 0.0 3
E33916|E33916.1 Candida boidinii strain with lowered protease activity and utilization thereof as host for producing foreign protein. 36 8e-06 5
AX059531|AX059531.1 Sequence 264 from Patent WO0055325. 62 2e-05 1
AF076243|AF076243.1 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence. 62 2e-05 1
BX838383|BX838383.1 Arabidopsis thaliana Full-length cDNA 5PRIM end of clone GSLTSIL89ZD03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress). 62 2e-05 1
CB264640|CB264640.1 48-E014661-035-002-P12-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000P122Q 5-PRIME, mRNA sequence. 62 2e-05 1
BE525959|BE525959.1 M64C07STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone 600034526R1 5', mRNA sequence. 62 2e-05 1
BX827174|BX827174.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZB10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress). 62 2e-05 1
CD825453|CD825453.1 BN25.060N03F011129 BN25 Brassica napus cDNA clone BN25060N03, mRNA sequence. 62 2e-05 1
dna update 2004. 3. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF213114_1(EF213114|pid:none) Penaeus monodon cathepsin D mRNA, ... 201 2e-96
EF070454_1(EF070454|pid:none) Maconellicoccus hirsutus clone WHM... 203 2e-96
(Q03168) RecName: Full=Lysosomal aspartic protease; EC=... 210 2e-96
BT080419_1(BT080419|pid:none) Caligus clemensi clone ccle-evs-50... 213 5e-96
DQ010007_1(DQ010007|pid:none) Bombyx mori CathD mRNA, complete c... 198 5e-96
AB106552_1(AB106552|pid:none) Todarodes pacificus tpaD mRNA for ... 194 3e-94
DQ909010_1(DQ909010|pid:none) Clonorchis sinensis aspartic prote... 205 3e-94
FJ168036_1(FJ168036|pid:none) Fasciola hepatica cathepsin D-like... 201 2e-93
FJ654712_1(FJ654712|pid:none) Chrysomela tremulae aspartic prote... 189 8e-93
DQ131585_1(DQ131585|pid:none) Opisthorchis viverrini cathepsin D... 203 3e-91
protein update 2009. 6.20
PSORT

psg: 0.98 gvh: 0.77 alm: 0.42 top: 0.57 tms: 0.00 mit: 0.36 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: extracellular, including cell wall
16.0 %: mitochondrial
16.0 %: nuclear
12.0 %: vacuolar
8.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for VFF806 is exc

5' end seq. ID VFF806F
5' end seq.
>VFF806F.Seq
AATTGTCACCTGACTTACATAAAAGAAAATGAAATTACTTATTTTAACTTTATTTTTAGC
TACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGA
ATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTAC
CACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTAC
CCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATC
AAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGC
CTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTAT
GTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATT
ATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTTCGCCAAATTCGATGGTAT
TTTAGG----------
Length of 5' end seq. 546
3' end seq. ID VFF806Z
3' end seq.
>VFF806Z.Seq
----------TTGCTTTCCAATCCATCTCTGTTAATTCAATTCCACCAGTCTTTTACAAC
ATGTTATCACAAGGTTTAGTTTCATCAACACTCTTCTCCTTCTGGTTATCAAGAACTCCA
GGTGCCAACGGTGGTGAACTCTCATTCGGTTCAATCGATAACACCAAATACACTGGTGAC
ATTACCTACGTCCCATTAACCAACGAAACCTATTGGGGATTCGTTATGGATGACTTTGCT
ATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGATTCAGGT
ACATCACTCATTGCTGGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTAGGTGCT
GTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTACCAAAT
GTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTTTTAGAA
GTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATG
GGAAATTTCTGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTCGATTTT
GGTAATAAACAAGTTGGTTTCGCAACTGCCATTCAAGGTTAAATTTTTTTAATTAATTTA
TATTTAAGNATAGAAATAAAAC
Length of 3' end seq. 672
Connected seq. ID VFF806P
Connected seq.
>VFF806P.Seq
AATTGTCACCTGACTTACATAAAAGAAAATGAAATTACTTATTTTAACTTTATTTTTAGC
TACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGA
ATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTAC
CACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTAC
CCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATC
AAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGC
CTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTAT
GTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATT
ATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTTCGCCAAATTCGATGGTAT
TTTAGG----------TTGCTTTCCAATCCATCTCTGTTAATTCAATTCCACCAGTCTTT
TACAACATGTTATCACAAGGTTTAGTTTCATCAACACTCTTCTCCTTCTGGTTATCAAGA
ACTCCAGGTGCCAACGGTGGTGAACTCTCATTCGGTTCAATCGATAACACCAAATACACT
GGTGACATTACCTACGTCCCATTAACCAACGAAACCTATTGGGGATTCGTTATGGATGAC
TTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGAT
TCAGGTACATCACTCATTGCTGGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTA
GGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTA
CCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTT
TTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTA
AACATGGGAAATTTCTGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTC
GATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCATTCAAGGTTAAATTTTTTTAATT
AATTTATATTTAAGNATAGAAATAAAAC
Length of connected seq. 1218
Full length Seq ID -
Full length Seq. -
Length of full length seq. -