VFF801
Library VF
(Link to library)
Clone ID VFF801
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13706-1
Original site URL
Representative seq. ID VFF801E
(Link to Original site)
Representative DNA sequence
>VFF801 (VFF801Q) /CSM/VF/VFF8-A/VFF801Q.Seq.d/
AATCCATTATTTTGGAAAAGAATTACACATATATACATATATACATATACAAAAATGTTG
GGTCGTTTAAGAACTGTTGTCAAAGCTTCATCATCAAATTCAATTAGAAATTATCTTGGA
TATACATCAGGAGTTCAAAAAAAAACAGTTACAGTTATTCCAGGTGATGGTATTGGTCCA
GAGATTACATCATCAGTTATGGGTGTATTCCAAGCAGCCAAAGTACCAATTGAATGGGAA
ATTTTCGATATTAGTGGTGGACAACCAATTTCACAAGAATTGATTGCATCAATTACTAGA
AATAAAGTTGCATTAAAGGGACCACTTTACACTGAGATTTTATCAGGATCTCAATCAAGA
AATATGGAACTTAGAAAAGCATTAGATTTATATGCTCACGTTGTACCATGCAAACAAATT
CCAGGTATCACCGCACGTCACGACGATGTTTTAGTTGATTTTGTTGTCATTAGAGAGAAC
ACCCAAGGTGAGTACAGTGGTCTCGAACAAGTATTGACACCAGGTGTAGTCCAATCACTT
AAAATCATAACCAAAGAAGCATCAGAACGTATTGCTCGTTACGCATTCGAATATGCCAAA
GCAAACGGTAGAAAGAAGGTAACAGCCGTTCACAAAGCAAACATTCAAAAACAAACCGAT
GGTCTCTTCCTTGCAACTTGCACTCAAATCGCCAAAGAGTATCCAGAAATTAAATTTGAA
AACACCATCATTGATAATTGTTGTATGCAATTGGTTAAATCACCAGAACAATACGATGTT
ATGGTCACTCCAAACTTATATGGTAATATTGTCTCAAATATTGGTGCTGCTTTAGTTGGT
GGTCCAGGTTTGGCTGGTGGTGCAAATGTTGGTGAGGGAAGTATTATTTTCGAAATGGGT
GCTCATCACGTCGCTGCTGATATCGCCGGTAAAGATAAAGCAAATCCAACCGGTTTATTA
TTAGCCTCTGTTATGATGTTAAAACATTTAGGCTTAAATGAACATGCTACCAAAGTTGAA
AATGCCGTTAAAGCCGTCATTAAAGAAGGTACCTTAACTTCTGATATCGGTGGTAAATCC
TCAACTAAACAATTCACTGGCGCTGTCATNATTACATTAAAAAAATCAAAACTAAATTAA
AAAA
sequence update 2001. 6. 9
Translated Amino Acid sequence
NPLFWKRITHIYIYTYTKMLGRLRTVVKASSSNSIRNYLGYTSGVQKKTVTVIPGDGIGP
EITSSVMGVFQAAKVPIEWEIFDISGGQPISQELIASITRNKVALKGPLYTEILSGSQSR
NMELRKALDLYAHVVPCKQIPGITARHDDVLVDFVVIRENTQGEYSGLEQVLTPGVVQSL
KIITKEASERIARYAFEYAKANGRKKVTAVHKANIQKQTDGLFLATCTQIAKEYPEIKFE
NTIIDNCCMQLVKSPEQYDVMVTPNLYGNIVSNIGAALVGGPGLAGGANVGEGSIIFEMG
AHHVAADIAGKDKANPTGLLLASVMMLKHLGLNEHATKVENAVKAVIKEGTLTSDIGGKS
STKQFTGAVXITLKKSKLN*k


Translated Amino Acid sequence (All Frames)
Frame A:
NPLFWKRITHIYIYTYTKMLGRLRTVVKASSSNSIRNYLGYTSGVQKKTVTVIPGDGIGP
EITSSVMGVFQAAKVPIEWEIFDISGGQPISQELIASITRNKVALKGPLYTEILSGSQSR
NMELRKALDLYAHVVPCKQIPGITARHDDVLVDFVVIRENTQGEYSGLEQVLTPGVVQSL
KIITKEASERIARYAFEYAKANGRKKVTAVHKANIQKQTDGLFLATCTQIAKEYPEIKFE
NTIIDNCCMQLVKSPEQYDVMVTPNLYGNIVSNIGAALVGGPGLAGGANVGEGSIIFEMG
AHHVAADIAGKDKANPTGLLLASVMMLKHLGLNEHATKVENAVKAVIKEGTLTSDIGGKS
STKQFTGAVXITLKKSKLN*k


Frame B:
ihyfgkelhiytyihiqkcwvv*ellsklhhqiqleiildihqefkkkqlqlfqvmvlvq
rlhhqlwvyskqpkyqlngkfsilvvdnqfhkn*lhqlleiklh*rdhftlrfyqdlnqe
iwnlekh*iymltlyhankfqvsphvttmf*lillslertpkvstvvsnky*hqv*snhl
ks*pkkhqnvllvthsnmpkqtverr*qpftkqtfknkpmvsslqlalkspksiqklnlk
tpsliivvcnwlnhqnntmlwslqtymvilsqilvll*lvvqvwlvvqmlvrevlfskwv
litsllispvkikqiqpvyy*pll*c*ni*a*mnmlpklkmplkpslkkvp*llisvvnp
qlnnslalsxlh*knqn*ikk


Frame C:
siileknytyihiyiyknvgsfknccqsfiikfn*klswiyirsskknsysysr*wywsr
dyiisygcipssqstn*mgnfry*wwttnftridciny*k*scikgttlh*dfirisikk
ygt*ksirficsrctmqtnsryhrtsrrcfs*fcch*rehpr*vqwsrtsidtrcspit*
nhnqrsirtycslriricqskr*kegnsrsqskhsktnrwslpcnlhsnrqrvsrn*i*k
hhh**llyaig*itrtircyghskliw*yclkywccfswwsrfgwwckcw*gkyyfrngc
ssrrc*yrr*r*sksnrfiislcydvktfrlk*tcyqs*kcr*srh*rrylnf*yrw*il
n*tihwrchxyikkiktklk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFF801 (VFF801Q) /CSM/VF/VFF8-A/VFF801Q.Seq.d/ 2056 0.0
VFM256 (VFM256Q) /CSM/VF/VFM2-C/VFM256Q.Seq.d/ 2048 0.0
VFL411 (VFL411Q) /CSM/VF/VFL4-A/VFL411Q.Seq.d/ 2048 0.0
VFI681 (VFI681Q) /CSM/VF/VFI6-D/VFI681Q.Seq.d/ 2048 0.0
VFD878 (VFD878Q) /CSM/VF/VFD8-D/VFD878Q.Seq.d/ 2048 0.0
VFA270 (VFA270Q) /CSM/VF/VFA2-C/VFA270Q.Seq.d/ 2048 0.0
CFI391 (CFI391Q) /CSM/CF/CFI3-D/CFI391Q.Seq.d/ 2048 0.0
VFF490 (VFF490Q) /CSM/VF/VFF4-D/VFF490Q.Seq.d/ 2040 0.0
VFN276 (VFN276Q) /CSM/VF/VFN2-D/VFN276Q.Seq.d/ 2038 0.0
VFL143 (VFL143Q) /CSM/VF/VFL1-B/VFL143Q.Seq.d/ 2038 0.0

own update 2001.12. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

G65029|G65029.1 DH0538 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideumSTS genomic 5', sequence tagged site. 567 e-157 1
BE451309|BE451309.1 EST402197 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY17P13, mRNA sequence. 50 2e-05 2
BE434906|BE434906.1 EST405984 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG24O19, mRNA sequence. 50 2e-05 2
AW738654|AW738654.1 EST340081 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD8G3 5', mRNA sequence. 50 2e-05 2
AW617822|AW617822.1 EST324221 L. hirsutum trichome, Cornell University Lycopersicon hirsutum cDNA clone cLHT24L9 5', mRNA sequence. 50 2e-05 2
AC006610|AC006610.1 Caenorhabditis elegans cosmid C30F12, complete sequence. 60 2e-05 2
BI925320|BI925320.1 EST545209 tomato flower, buds 0-3 mm Lycopersicon esculentum cDNA clone cTOA26O11 5' end, mRNA sequence. 50 2e-05 2
BW277250|BW277250.1 Ciona intestinalis cDNA, clone:cign078d17, 5' end, single read. 50 2e-05 2
BG643704|BG643704.1 EST511898 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF32G6 5' sequence, mRNA sequence. 50 2e-05 2
BW274976|BW274976.1 Ciona intestinalis cDNA, clone:cign070i08, 5' end, single read. 50 2e-05 2
dna update 2004. 3. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54B68) RecName: Full=Isocitrate dehydrogenase [NAD] regulatory... 643 0.0
(Q55BI2) RecName: Full=Isocitrate dehydrogenase [NAD] regulatory... 332 2e-89
BT039856_1(BT039856|pid:none) Zea mays full-length cDNA clone ZM... 321 3e-86
BT036874_1(BT036874|pid:none) Zea mays full-length cDNA clone ZM... 318 2e-85
EU965102_1(EU965102|pid:none) Zea mays clone 283827 isocitrate d... 318 3e-85
BT066613_1(BT066613|pid:none) Zea mays full-length cDNA clone ZM... 317 5e-85
BT034072_1(BT034072|pid:none) Zea mays full-length cDNA clone ZM... 317 7e-85
AB189167_1(AB189167|pid:none) Oryza sativa Japonica Group OsIDHa... 317 7e-85
CR855156_11(CR855156|pid:none) Oryza sativa genomic DNA, chromos... 316 9e-85
EF085316_1(EF085316|pid:none) Picea sitchensis clone WS02727_N02... 316 1e-84
protein update 2009. 7.10
PSORT

psg: 0.83 gvh: 0.39 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.56 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: mitochondrial
12.0 %: cytoplasmic
12.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for VFF801 is mit

5' end seq. ID VFF801F
5' end seq.
>VFF801F.Seq
AATCCATTATTTTGGAAAAGAATTACACATATATACATATATACATATACAAAAATGTTG
GGTCGTTTAAGAACTGTTGTCAAAGCTTCATCATCAAATTCAATTAGAAATTATCTTGGA
TATACATCAGGAGTTCAAAAAAAAACAGTTACAGTTATTCCAGGTGATGGTATTGGTCCA
GAGATTACATCATCAGTTATGGGTGTATTCCAAGCAGCCAAAGTACCAATTGAATGGGAA
ATTTTCGATATTAGTGGTGGACAACCAATTTCACAAGAATTGATTGCATCAATTACTAGA
AATAAAGTTGCATTAAAGGGACCACTTTACACTGAGATTTTATCAGGATCTCAATCAAGA
AATATGGAACTTAGAAAAGCATTAGATTTATATGCTCACGTTGTACCATGCAAACAAATT
CCAGGTATCACCGCACGTCACGACGATGTTTTAGTTGATTTTGTTGTCATTAGAGAGAAC
ACCCAAGGTGAGTACAGTGGTCTCGAACAAGTATTGACACCAGGTGTAGTCCAATCACTT
AAAATCATAACCAAAGAAGCATCAGAACGTATTGC----------
Length of 5' end seq. 575
3' end seq. ID VFF801Z
3' end seq.
>VFF801Z.Seq
----------TGTCATTAGAGAGAACACCCAAGGTGAGTACAGTGGTCTCGAACAAGTAT
TGACACCAGGTGTAGTCCAATCACTTAAAATCATAACCAAAGAAGCATCAGAACGTATTG
CTCGTTACGCATTCGAATATGCCAAAGCAAACGGTAGAAAGAAGGTAACAGCCGTTCACA
AAGCAAACATTCAAAAACAAACCGATGGTCTCTTCCTTGCAACTTGCACTCAAATCGCCA
AAGAGTATCCAGAAATTAAATTTGAAAACACCATCATTGATAATTGTTGTATGCAATTGG
TTAAATCACCAGAACAATACGATGTTATGGTCACTCCAAACTTATATGGTAATATTGTCT
CAAATATTGGTGCTGCTTTAGTTGGTGGTCCAGGTTTGGCTGGTGGTGCAAATGTTGGTG
AGGGAAGTATTATTTTCGAAATGGGTGCTCATCACGTCGCTGCTGATATCGCCGGTAAAG
ATAAAGCAAATCCAACCGGTTTATTATTAGCCTCTGTTATGATGTTAAAACATTTAGGCT
TAAATGAACATGCTACCAAAGTTGAAAATGCCGTTAAAGCCGTCATTAAAGAAGGTACCT
TAACTTCTGATATCGGTGGTAAATCCTCAACTAAACAATTCACTGGCGCTGTCATNATTA
CATTAAAAAAATCAAAACTAAATTAAAAAA
Length of 3' end seq. 680
Connected seq. ID VFF801P
Connected seq.
>VFF801P.Seq
AATCCATTATTTTGGAAAAGAATTACACATATATACATATATACATATACAAAAATGTTG
GGTCGTTTAAGAACTGTTGTCAAAGCTTCATCATCAAATTCAATTAGAAATTATCTTGGA
TATACATCAGGAGTTCAAAAAAAAACAGTTACAGTTATTCCAGGTGATGGTATTGGTCCA
GAGATTACATCATCAGTTATGGGTGTATTCCAAGCAGCCAAAGTACCAATTGAATGGGAA
ATTTTCGATATTAGTGGTGGACAACCAATTTCACAAGAATTGATTGCATCAATTACTAGA
AATAAAGTTGCATTAAAGGGACCACTTTACACTGAGATTTTATCAGGATCTCAATCAAGA
AATATGGAACTTAGAAAAGCATTAGATTTATATGCTCACGTTGTACCATGCAAACAAATT
CCAGGTATCACCGCACGTCACGACGATGTTTTAGTTGATTTTGTTGTCATTAGAGAGAAC
ACCCAAGGTGAGTACAGTGGTCTCGAACAAGTATTGACACCAGGTGTAGTCCAATCACTT
AAAATCATAACCAAAGAAGCATCAGAACGTATTGC----------TGTCATTAGAGAGAA
CACCCAAGGTGAGTACAGTGGTCTCGAACAAGTATTGACACCAGGTGTAGTCCAATCACT
TAAAATCATAACCAAAGAAGCATCAGAACGTATTGCTCGTTACGCATTCGAATATGCCAA
AGCAAACGGTAGAAAGAAGGTAACAGCCGTTCACAAAGCAAACATTCAAAAACAAACCGA
TGGTCTCTTCCTTGCAACTTGCACTCAAATCGCCAAAGAGTATCCAGAAATTAAATTTGA
AAACACCATCATTGATAATTGTTGTATGCAATTGGTTAAATCACCAGAACAATACGATGT
TATGGTCACTCCAAACTTATATGGTAATATTGTCTCAAATATTGGTGCTGCTTTAGTTGG
TGGTCCAGGTTTGGCTGGTGGTGCAAATGTTGGTGAGGGAAGTATTATTTTCGAAATGGG
TGCTCATCACGTCGCTGCTGATATCGCCGGTAAAGATAAAGCAAATCCAACCGGTTTATT
ATTAGCCTCTGTTATGATGTTAAAACATTTAGGCTTAAATGAACATGCTACCAAAGTTGA
AAATGCCGTTAAAGCCGTCATTAAAGAAGGTACCTTAACTTCTGATATCGGTGGTAAATC
CTCAACTAAACAATTCACTGGCGCTGTCATNATTACATTAAAAAAATCAAAACTAAATTA
AAAAA
Length of connected seq. 1255
Full length Seq ID VFF801E
Full length Seq.
>VFF801E.Seq
AATCCATTATTTTGGAAAAGAATTACACATATATACATATATACATATACAAAAATGTTG
GGTCGTTTAAGAACTGTTGTCAAAGCTTCATCATCAAATTCAATTAGAAATTATCTTGGA
TATACATCAGGAGTTCAAAAAAAAACAGTTACAGTTATTCCAGGTGATGGTATTGGTCCA
GAGATTACATCATCAGTTATGGGTGTATTCCAAGCAGCCAAAGTACCAATTGAATGGGAA
ATTTTCGATATTAGTGGTGGACAACCAATTTCACAAGAATTGATTGCATCAATTACTAGA
AATAAAGTTGCATTAAAGGGACCACTTTACACTGAGATTTTATCAGGATCTCAATCAAGA
AATATGGAACTTAGAAAAGCATTAGATTTATATGCTCACGTTGTACCATGCAAACAAATT
CCAGGTATCACCGCACGTCACGACGATGTTTTAGTTGATTTTGTTGTCATTAGAGAGAAC
ACCCAAGGTGAGTACAGTGGTCTCGAACAAGTATTGACACCAGGTGTAGTCCAATCACTT
AAAATCATAACCAAAGAAGCATCAGAACGTATTGCTCGTTACGCATTCGAATATGCCAAA
GCAAACGGTAGAAAGAAGGTAACAGCCGTTCACAAAGCAAACATTCAAAAACAAACCGAT
GGTCTCTTCCTTGCAACTTGCACTCAAATCGCCAAAGAGTATCCAGAAATTAAATTTGAA
AACACCATCATTGATAATTGTTGTATGCAATTGGTTAAATCACCAGAACAATACGATGTT
ATGGTCACTCCAAACTTATATGGTAATATTGTCTCAAATATTGGTGCTGCTTTAGTTGGT
GGTCCAGGTTTGGCTGGTGGTGCAAATGTTGGTGAGGGAAGTATTATTTTCGAAATGGGT
GCTCATCACGTCGCTGCTGATATCGCCGGTAAAGATAAAGCAAATCCAACCGGTTTATTA
TTAGCCTCTGTTATGATGTTAAAACATTTAGGCTTAAATGAACATGCTACCAAAGTTGAA
AATGCCGTTAAAGCCGTCATTAAAGAAGGTACCTTAACTTCTGATATCGGTGGTAAATCC
TCAACTAAACAATTCACTGGCGCTGTCATNATTACATTAAAAAAATCAAAACTAAATTAA
AAAA
Length of full length seq. 1144