VFF787
Library VF
(Link to library)
Clone ID VFF787
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VFF787P
(Link to Original site)
Representative DNA sequence
>VFF787 (VFF787Q) /CSM/VF/VFF7-D/VFF787Q.Seq.d/
GTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACATTGGCCAT
TCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGTGAAA
CTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGAAAGAAACCG
CTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTATTTCA
ATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAAATGTTCAAC
GTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTG
GTGAAAAGAATATTTTAATTTTCGATTTAGGTGGTGGTACATTTGATGTTTCTCTCCTTA
CCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATTTAGGTGGTG
AAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTAAACATAAAA
AAGATATTATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCA
AXXXXXXXXXXAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTGTATTAATT
CAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAA
CTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTT
GATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAG
ATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCT
GATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAAT
AAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCC
AAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGG
TTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAA
GCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGT
GGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAA
TTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATA
ATAAGTTAGTAAAATCAATAAAGCTTCTCATATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
LIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPEEISSMVLLKMKETA
EAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKLNVQRIINEPTAAAIAYGLEKKGSG
EKNILIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDFDNRLVSHFVDEFKRKHKK
DIMGNQRAVRRLRTACERA---

---TQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVD
ANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNK
LENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEA
VVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kii
s**nq*sfsy


Translated Amino Acid sequence (All Frames)
Frame A:
v*lvvnlvtkkfkvi*nighsklfqrmvishifklnskvklkfshqkkslqwys*k*kkp
lklilvkpliml*lpfqlismivnvkqpkmlvqfqn*mfnvllmnqllllllmv*krkvl
vkrif*fsi*vvvhlmflslplkmvylklkpplvili*vvkiliivsfltllmnlnvnik
kilwvinvlfvv*ellvnvp---

---nsnllyil**strcinssl*r*tcydqr**fig*i*tfwyststkrctts*syi*c*
ckwylkcis*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*ttkrsc*ike*
igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg*i*r*deslrs
scqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidflknn
klvksiklli

Frame B:
fnws*i**qrssk*yetlaiqsyskgw**atyss*iqr*n*sfltrrnlfngtlknernr
*slsw*nh**ccnyrsslfq**stssnqrcwynfkikcstyy**tncccyclwfrkerfw
*keyfnfrfrwwyi*cfspyh*rwci*s*shrw*ysfrw*rf**ssrfslc**i*t*t*k
ryyg*stccssfkncl*tcq---

---TQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQVEVTFDVD
ANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDEQQKDRVESKNK
LENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEA
VVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseenisik*is*kii
s**nq*sfsy

Frame C:
LIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFSPEEISSMVLLKMKETA
EAYLGKTINNAVITVPAYFNDSQRQATKDAGTISKLNVQRIINEPTAAAIAYGLEKKGSG
EKNILIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDFDNRLVSHFVDEFKRKHKK
DIMGNQRAVRRLRTACERA---

---lkpslhtliinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqevyhklklhlmlm
qmvs*myqlkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkmnnkkivlnqrin
wkimhsllkiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkrmnmkir*kp*kq
lsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrktslsnrflkk**
vskinkashi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFF787 (VFF787Q) /CSM/VF/VFF7-D/VFF787Q.Seq.d/ 2625 0.0
VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/ 1473 0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/ 1473 0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/ 1473 0.0
VHP236 (VHP236Q) /CSM/VH/VHP2-B/VHP236Q.Seq.d/ 1473 0.0
VHP224 (VHP224Q) /CSM/VH/VHP2-A/VHP224Q.Seq.d/ 1473 0.0
VHO566 (VHO566Q) /CSM/VH/VHO5-C/VHO566Q.Seq.d/ 1473 0.0
VHO443 (VHO443Q) /CSM/VH/VHO4-B/VHO443Q.Seq.d/ 1473 0.0
VHN562 (VHN562Q) /CSM/VH/VHN5-C/VHN562Q.Seq.d/ 1473 0.0
VHK815 (VHK815Q) /CSM/VH/VHK8-A/VHK815Q.Seq.d/ 1473 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70). 1473 0.0 1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,. 1465 0.0 1
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds. 293 e-180 9
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 293 e-172 13
A58313|A58313.1 Sequence 1 from Patent WO9636707. 133 e-125 10
AX536934|AX536934.1 Sequence 535 from Patent WO02064766. 133 e-124 10
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70. 133 e-124 10
AF278536|AF278536.1 Parastrongyloides trichosuri heat shock 70 protein gene, complete cds. 157 e-120 10
L40815|L40815.1 Plasmodium berghei heat shock protein 70 (hsp70) gene, complete cds. 165 e-105 11
M19753|M19753.1 Plasmodium falciparum heat shock protein (HSP70) homologue mRNA, complete cds. 94 e-105 12
dna update 2004. 3. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 398 e-109
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 396 e-109
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 369 e-100
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 366 1e-99
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3; 345 2e-93
AY582833_1(AY582833|pid:none) Chytriomyces confervae strain CBS ... 345 2e-93
U71151_1(U71151|pid:none) Pneumocystis carinii heat shock protei... 340 5e-92
U80967_1(U80967|pid:none) Pneumocystis carinii f. sp. carinii he... 340 5e-92
EU679414_1(EU679414|pid:none) Tetranychus cinnabarinus heat shoc... 340 7e-92
EU679412_1(EU679412|pid:none) Tetranychus cinnabarinus heat shoc... 338 2e-91
protein update 2009. 6.19
PSORT

psg: 0.58 gvh: 0.25 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.02
nuc: 0.14 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for VFF787 is nuc

5' end seq. ID VFF787F
5' end seq.
>VFF787F.Seq
GTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACATTGGCCAT
TCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGTGAAA
CTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGAAAGAAACCG
CTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTATTTCA
ATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAAATGTTCAAC
GTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTG
GTGAAAAGAATATTTTAATTTTCGATTTAGGTGGTGGTACATTTGATGTTTCTCTCCTTA
CCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATTTAGGTGGTG
AAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTAAACATAAAA
AAGATATTATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCA
A----------
Length of 5' end seq. 601
3' end seq. ID VFF787Z
3' end seq.
>VFF787Z.Seq
----------AACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTGTATTAATTC
AAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAAC
TTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTG
ATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGA
TTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTG
ATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATA
AATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCA
AAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGT
TAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAG
CAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTG
GTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAAT
TAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAA
TAAGTTAGTAAAATCAATAAAGCTTCTCATATA
Length of 3' end seq. 743
Connected seq. ID VFF787P
Connected seq.
>VFF787P.Seq
GTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACATTGGCCAT
TCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGTGAAA
CTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGAAAGAAACCG
CTGAAGCTTATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTATTTCA
ATGATAGTCAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAAATGTTCAAC
GTATTATTAATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTG
GTGAAAAGAATATTTTAATTTTCGATTTAGGTGGTGGTACATTTGATGTTTCTCTCCTTA
CCATTGAAGATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATTTAGGTGGTG
AAGATTTTGATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTAAACATAAAA
AAGATATTATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCA
A----------AACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTGTATTAATT
CAAGTTTATGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAA
CTTTCTGGTATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTT
GATGCAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAG
ATTACAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCT
GATGCAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAAT
AAATTGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCC
AAAATTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGG
TTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAA
GCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGT
GGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAA
TTAGATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATA
ATAAGTTAGTAAAATCAATAAAGCTTCTCATATA
Length of connected seq. 1344
Full length Seq ID -
Full length Seq. -
Length of full length seq. -