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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM503
Library AF
(Link to library)
Clone ID AFM503
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM503 (AFM503Q) /CSM/AF/AFM5-A/AFM503Q.Seq.d/
XXXXXXXXXXGGTAAGNCTNTTNCNTNGGAGGTGAAGGTAGGGGCCACNTTGANAATGTA
AAACCAAGATTCAAGATAANGAGGGTTTCCACCAGATCANCAACGTNTCATTTTCGCTGG
TAACAATTANAAGATGGTCGNACTCTCTCTGATTACAATATCCAAAAAGAATCAACTCTC
CACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTANCTGGTAAG
ACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAA
GACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA
GATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTC
AGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTC
GAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGT
ATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACT
CTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGT
GGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGT
AGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCAGAT
CATCANNGNC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---*xxxxggegrghxxnvkprfkixrvstrsxtxhfrw*QLXDGRTLSDYNIQKESTLH
LVLRLRGGMQIFVKTLXGKTITLEVEGSDNIENVKTKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGI
PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGS
DNIENVKTKIQDKEGIPPDHXX
Translated Amino Acid sequence (All Frames) 
Frame A:
---vxlxxxr*r*gpx*xcktkiqdxegfhqixnvsfslvtixrwsxsl*lqypkrinsp
lgpqikrwyanlcqnixw*dhhs*s*glr*y*kc*nkdsrqrryptrptkinfrw*tirr
wsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrry
strsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r*
*qh*ecknknsrqrryptrssx


Frame B:
---*xxxxggegrghxxnvkprfkixrvstrsxtxhfrw*QLXDGRTLSDYNIQKESTLH
LVLRLRGGMQIFVKTLXGKTITLEVEGSDNIENVKTKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGI
PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGS
DNIENVKTKIQDKEGIPPDHXX


Frame C:
---kxxxxevkvgatlxm*nqdsr*xgfppdxqrxifagnnxkmvxlslitiskknqlst
wssd*evvckslskhxlvrpsllklraqiilkmlkqrfktkkvshqtnkd*fslvnn*km
vvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvf
hqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvv
ttlrm*kqkfktkkvshqiixx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM503 (AFM503Q) /CSM/AF/AFM5-A/AFM503Q.Seq.d/                       1459   0.0
CFB891 (CFB891Q) /CSM/CF/CFB8-D/CFB891Q.Seq.d/                       1370   0.0
SFH711 (SFH711Q) /CSM/SF/SFH7-A/SFH711Q.Seq.d/                       1366   0.0
CFC580 (CFC580Q) /CSM/CF/CFC5-D/CFC580Q.Seq.d/                       1364   0.0
CFJ655 (CFJ655Q) /CSM/CF/CFJ6-C/CFJ655Q.Seq.d/                       1362   0.0
CFF858 (CFF858Q) /CSM/CF/CFF8-C/CFF858Q.Seq.d/                       1360   0.0
AFK323 (AFK323Q) /CSM/AF/AFK3-A/AFK323Q.Seq.d/                       1360   0.0
AFE365 (AFE365Q) /CSM/AF/AFE3-C/AFE365Q.Seq.d/                       1358   0.0
SFD191 (SFD191Q) /CSM/SF/SFD1-D/SFD191Q.Seq.d/                       1356   0.0
CFC829 (CFC829Q) /CSM/CF/CFC8-B/CFC829Q.Seq.d/                       1356   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347077) Dictyostelium discoideum cDNA clone:dda26e01, 3' ...  1455   0.0    1
(BJ373746) Dictyostelium discoideum cDNA clone:ddc4f24, 3' e...  1352   0.0    2
(BJ371852) Dictyostelium discoideum cDNA clone:ddc10b04, 3' ...  1336   0.0    1
(BJ375803) Dictyostelium discoideum cDNA clone:ddc20d01, 3' ...  1330   0.0    1
(BJ374825) Dictyostelium discoideum cDNA clone:ddc16n08, 3' ...  1304   0.0    1
(BJ372149) Dictyostelium discoideum cDNA clone:ddc11p09, 3' ...  1302   0.0    2
(BJ402270) Dictyostelium discoideum cDNA clone:dds16f03, 3' ...  1298   0.0    2
(BJ374116) Dictyostelium discoideum cDNA clone:ddc6f18, 3' e...  1294   0.0    1
(BJ372367) Dictyostelium discoideum cDNA clone:ddc12f11, 3' ...  1294   0.0    3
(BJ398486) Dictyostelium discoideum cDNA clone:dds12j17, 3' ...  1292   0.0    2
dna update 2009. 4.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   424   e-117
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   424   e-117
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   424   e-117
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   420   e-116
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   408   e-113
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   406   e-113
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   406   e-113
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   406   e-113
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   406   e-113
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   406   e-113
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM503 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM503Z
3' end seq. 
>AFM503Z.Seq
XXXXXXXXXXGGTAAGNCTNTTNCNTNGGAGGTGAAGGTAGGGGCCACNTTGANAATGTA
AAACCAAGATTCAAGATAANGAGGGTTTCCACCAGATCANCAACGTNTCATTTTCGCTGG
TAACAATTANAAGATGGTCGNACTCTCTCTGATTACAATATCCAAAAAGAATCAACTCTC
CACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTANCTGGTAAG
ACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAA
GACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA
GATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTC
AGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTC
GAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGT
ATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACT
CTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGT
GGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGT
AGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCACCAGAT
CATCANNGNC
Length of 3' end seq. 790
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -