VFF755
Library VF
(Link to library)
Clone ID VFF755
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15456-1
Original site URL
Representative seq. ID VFF755P
(Link to Original site)
Representative DNA sequence
>VFF755 (VFF755Q) /CSM/VF/VFF7-C/VFF755Q.Seq.d/
AATGCTGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATT
ACCATTGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTG
TGGATTCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATAT
AACAGCGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGT
AGTGGTGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTT
AAAGATCAAXXXXXXXXXXTGGTCCAATGNCTGATATTCCTGCCCTCAATGAAAAATTAG
GNGCTGTCATCTTANATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTAC
CAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTTT
TAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATNTATGGGTATCGAGTTNA
ACATGGGAAATTTCTGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTANTCG
ATTTTGGTAATAAACAAGTTGGTTTCGCANCTGCCATTCAAGGTTAANTTTTTTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
NAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKY
NSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQ---

---GPMXDIPALNEKLGAVILXGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVT
EFGKTECLSGXMGIEXNMGNFWILGDVFISAYYTVXDFGNKQVGFAXAIQG*xf*


Translated Amino Acid sequence (All Frames)
Frame A:
NAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKY
NSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQ---

---wsnx*yscpq*kirxchlxw*rcll*l*ryqhltkcyhhrcws*icfnskrirfrsy
*vrkd*mfewxygyrvxhgkfldpw*cfhlcllycxrfw**tswfrxchsrlxfl

Frame B:
mlvpqsqfqilkmlntmvplplvpqvkpsk*fsilvhptcgfhqrnvqslllhviyitni
tavpqahmsptelispsntvvvlcqvlslkipsllvh*llki---

---GPMXDIPALNEKLGAVILXGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVT
EFGKTECLSGXMGIEXNMGNFWILGDVFISAYYTVXDFGNKQVGFAXAIQG*xf*

Frame C:
cwyhnpnfrf*rcsilwchyhwyprsslqssfrywfiqlvdsikemsnhcccm*ft*qi*
qrclkhicrqrn*fhhpir*wcyvrfclsrfrhcwfinc*rs---

---vqxliflpsmkn*xlssxmvkvsslivalstpyqmlpspllvvnlf*lqkntf*kll
sserlnv*vdxwvssxtweisgslvmfsslltilxsilvinklvsxlpfkvxff

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFF755 (VFF755Q) /CSM/VF/VFF7-C/VFF755Q.Seq.d/ 1193 0.0
VSJ209 (VSJ209Q) /CSM/VS/VSJ2-A/VSJ209Q.Seq.d/ 613 e-174
VSF779 (VSF779Q) /CSM/VS/VSF7-D/VSF779Q.Seq.d/ 613 e-174
VSF661 (VSF661Q) /CSM/VS/VSF6-C/VSF661Q.Seq.d/ 613 e-174
VSF544 (VSF544Q) /CSM/VS/VSF5-B/VSF544Q.Seq.d/ 613 e-174
VSF331 (VSF331Q) /CSM/VS/VSF3-B/VSF331Q.Seq.d/ 613 e-174
VSD288 (VSD288Q) /CSM/VS/VSD2-D/VSD288Q.Seq.d/ 613 e-174
VFO736 (VFO736Q) /CSM/VF/VFO7-B/VFO736Q.Seq.d/ 613 e-174
VFO734 (VFO734Q) /CSM/VF/VFO7-B/VFO734Q.Seq.d/ 613 e-174
VFO719 (VFO719Q) /CSM/VF/VFO7-A/VFO719Q.Seq.d/ 613 e-174

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Y16962|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D. 613 0.0 2
AJ243946|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2. 613 0.0 2
AL161500|AL161500.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12. 62 1e-05 1
CD825453|CD825453.1 BN25.060N03F011129 BN25 Brassica napus cDNA clone BN25060N03, mRNA sequence. 62 1e-05 1
BX838383|BX838383.1 Arabidopsis thaliana Full-length cDNA 5PRIM end of clone GSLTSIL89ZD03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress). 62 1e-05 1
BX827174|BX827174.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZB10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress). 62 1e-05 1
AF076243|AF076243.1 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence. 62 1e-05 1
BX829292|BX829292.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL89ZE03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress). 62 1e-05 1
AV567523|AV567523.1 Arabidopsis thaliana cDNA clone:SQL15g03F, 3' end. 62 1e-05 1
CB264640|CB264640.1 48-E014661-035-002-P12-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000P122Q 5-PRIME, mRNA sequence. 62 1e-05 1
dna update 2004. 3. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ010007_1(DQ010007|pid:none) Bombyx mori CathD mRNA, complete c... 145 1e-33
AF454831_1(AF454831|pid:none) Apriona germari cathepsin D mRNA, ... 145 1e-33
AB106552_1(AB106552|pid:none) Todarodes pacificus tpaD mRNA for ... 145 1e-33
FJ654712_1(FJ654712|pid:none) Chrysomela tremulae aspartic prote... 142 9e-33
EF213114_1(EF213114|pid:none) Penaeus monodon cathepsin D mRNA, ... 142 9e-33
EF070454_1(EF070454|pid:none) Maconellicoccus hirsutus clone WHM... 141 2e-32
CP001577_36(CP001577|pid:none) Micromonas sp. RCC299 chromosome ... 137 3e-31
EF193385_1(EF193385|pid:none) Musca domestica aspartic proteinas... 137 3e-31
(Q03168) RecName: Full=Lysosomal aspartic protease; EC=... 136 6e-31
U90321_1(U90321|pid:none) Oncorhynchus mykiss cathepsin D mRNA, ... 135 1e-30
protein update 2009. 6.19
PSORT

psg: 0.75 gvh: 0.32 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for VFF755 is cyt

5' end seq. ID VFF755F
5' end seq.
>VFF755F.Seq
AATGCTGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATT
ACCATTGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTG
TGGATTCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATAT
AACAGCGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGT
AGTGGTGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTT
AAAGATCAA----------
Length of 5' end seq. 309
3' end seq. ID VFF755Z
3' end seq.
>VFF755Z.Seq
----------TGGTCCAATGNCTGATATTCCTGCCCTCAATGAAAAATTAGGNGCTGTCA
TCTTANATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTACCAAATGTTA
CCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTTTTAGAAGTTA
CTGAGTTCGGAAAGACTGAATGTTTGAGTGGATNTATGGGTATCGAGTTNAACATGGGAA
ATTTCTGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTANTCGATTTTGGTA
ATAAACAAGTTGGTTTCGCANCTGCCATTCAAGGTTAANTTTTTTAA
Length of 3' end seq. 337
Connected seq. ID VFF755P
Connected seq.
>VFF755P.Seq
AATGCTGGTACCACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATT
ACCATTGGTACCCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTG
TGGATTCCATCAAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATAT
AACAGCGGTGCCTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGT
AGTGGTGCTATGTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTT
AAAGATCAA----------TGGTCCAATGNCTGATATTCCTGCCCTCAATGAAAAATTAG
GNGCTGTCATCTTANATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTAC
CAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTTT
TAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATNTATGGGTATCGAGTTNA
ACATGGGAAATTTCTGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTANTCG
ATTTTGGTAATAAACAAGTTGGTTTCGCANCTGCCATTCAAGGTTAANTTTTTTAA
Length of connected seq. 646
Full length Seq ID -
Full length Seq. -
Length of full length seq. -