>VFF687 (VFF687Q) /CSM/VF/VFF6-D/VFF687Q.Seq.d/
ATTTTCAATTTAAAAAAAAAAGAATCAAATATATATATATAATTTAAAGATGTCAAACAA
AGACCAAGAAATCAAAGAAGAAGCACCAGTTGCTATTGAAGATCTTTCAAACCCAGTTGT
TGTTGATTCATACAATGCTGCTGGTATTATTGCAAATAATGCAATTAAACATGTAATTTC
AAAATGTGTTGTTGGAGCATTAGTTGTTGATATTTGTCAATATGGTGATGATTTCATTGA
AGCAGAAGCAGCAAAAACATTTACAAAGAGAAAGAATTTAGAAAAGGGTATTGCATTCCC
AACATGTGTTTCAGTTAATAATTGTGTTGGTCATTTTTCACCATTAAAAGGTAATACACG
TACATTGAAACAAGGTGATGTTGTAAAGATTGATTTAGGTTGTCATATTGATGGTTACAT
TGCAGTAGGTGCACACACCATTATCATTGGTAACACATCAGCTGAATCAATGACTGGTAA
GGTTGCCGATGCAATTTGTGCTGCCCACTACGCATTGGAAGCAGCATTAAGAATGATTCG
TCCAXXXXXXXXXX

fsi*KKKNQIYIYNLKMSNKDQEIKEEAPVAIEDLSNPVVVDSYNAAGIIANNAIKHVIS
KCVVGALVVDICQYGDDFIEAEAAKTFTKRKNLEKGIAFPTCVSVNNCVGHFSPLKGNTR
TLKQGDVVKIDLGCHIDGYIAVGAHTIIIGNTSAESMTGKVADAICAAHYALEAALRMIR
---

Frame A:
ifnlkkkesniyi*fkdvkqrprnqrrstscy*rsfkpscc*fiqccwyyck*cn*tcnf
kmccwsisc*ylsiw**fh*srsskniykekefrkgycipnmcfs**lcwsfftikr*yt
yietr*cckd*frlsy*wlhcsrcthhyhw*his*indw*gcrcnlccplrigssiknds
s---


Frame B:
fsi*KKKNQIYIYNLKMSNKDQEIKEEAPVAIEDLSNPVVVDSYNAAGIIANNAIKHVIS
KCVVGALVVDICQYGDDFIEAEAAKTFTKRKNLEKGIAFPTCVSVNNCVGHFSPLKGNTR
TLKQGDVVKIDLGCHIDGYIAVGAHTIIIGNTSAESMTGKVADAICAAHYALEAALRMIR
---


Frame C:
fqfkkkrikyiyii*rcqtktkkskkkhqlllkifqtqlllihtmllvllqimqlnm*fq
nvlleh*llifvnmvmislkqkqqkhlqreri*krvlhsqhvfqliivlvifhh*kvihv
h*nkvml*rli*vvilmvtlq*vhtplslvthqlnq*lvrlpmqfvlptthwkqh*e*fv
---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ621 (VSJ621Q) /CSM/VS/VSJ6-A/VSJ621Q.Seq.d/                        997   0.0
VFN495 (VFN495Q) /CSM/VF/VFN4-D/VFN495Q.Seq.d/                        997   0.0
VFF687 (VFF687Q) /CSM/VF/VFF6-D/VFF687Q.Seq.d/                        997   0.0
AFO861 (AFO861Q) /CSM/AF/AFO8-C/AFO861Q.Seq.d/                        997   0.0
VFO877 (VFO877Q) /CSM/VF/VFO8-D/VFO877Q.Seq.d/                        989   0.0
VFO384 (VFO384Q) /CSM/VF/VFO3-D/VFO384Q.Seq.d/                        989   0.0
AFG248 (AFG248Q) /CSM/AF/AFG2-B/AFG248Q.Seq.d/                        985   0.0
SLA750 (SLA750Q) /CSM/SL/SLA7-C/SLA750Q.Seq.d/                        973   0.0
CHA431 (CHA431Q) /CSM/CH/CHA4-B/CHA431Q.Seq.d/                        904   0.0
CFH696 (CFH696Q) /CSM/CF/CFH6-D/CFH696Q.Seq.d/                        896   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U61403|U61403.1 Dictyostelium discoideum PrlA (prlA) mRNA, partial cds.   934  0.0  1
BE579316|BE579316.1 kq25g08.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:O73806 O73806 PAS1. ;, mRNA sequence.    50  2e-06  2
AC145100|AC145100.1 Homo sapiens chromosome 5 clone RP11-1370D7, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44  0.001  3
CF507802|CF507802.1 USDA-FP_123000-303 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-60_G02 5', mRNA sequence.    34  0.006  3
BF052734|BF052734.1 EST437964 potato leaves and petioles Solanum tuberosum cDNA clone cSTB32F4 5' sequence, mRNA sequence.    46  0.015  2
BI178809|BI178809.1 EST519754 cSTE Solanum tuberosum cDNA clone cSTE16G5 5' sequence, mRNA sequence.    46  0.016  2
BE924285|BE924285.1 EST428054 potato leaves and petioles Solanum tuberosum cDNA clone cSTB29M5 5' sequence, mRNA sequence.    46  0.017  2
BF052250|BF052250.1 EST437480 potato leaves and petioles Solanum tuberosum cDNA clone cSTB31C19 5' sequence, mRNA sequence.    46  0.017  2
BE471638|BE471638.1 EST416491 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA29J22, mRNA sequence.    46  0.017  2
BE343505|BE343505.1 EST408667 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA25K17, mRNA sequence.    46  0.018  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXG4) RecName: Full=Proliferation-associated protein A;            306   2e-82
BT016100_1(BT016100|pid:none) Drosophila melanogaster LD30448 fu...   147   1e-34
AE014296_1056(AE014296|pid:none) Drosophila melanogaster chromos...   147   1e-34
BT044812_1(BT044812|pid:none) Salmo salar clone ssal-rgf-504-156...   143   3e-33
BC056591_1(BC056591|pid:none) Danio rerio proliferation-associat...   141   1e-32
BT048971_1(BT048971|pid:none) Salmo salar clone ssal-eve-513-197...   140   2e-32
AL591365_2(AL591365|pid:none) Zebrafish DNA sequence from clone ...   140   2e-32
AF056116_11(AF056116|pid:none) Fugu rubripes serine/threonine ki...   139   6e-32
BT077838_1(BT077838|pid:none) Lepeophtheirus salmonis clone lsal...   138   8e-32
BT045606_1(BT045606|pid:none) Salmo salar clone ssal-rgf-526-125...   138   8e-32

 psg: 0.69  gvh: 0.40  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VFF687 is cyt

>VFF687F.Seq
ATTTTCAATTTAAAAAAAAAAGAATCAAATATATATATATAATTTAAAGATGTCAAACAA
AGACCAAGAAATCAAAGAAGAAGCACCAGTTGCTATTGAAGATCTTTCAAACCCAGTTGT
TGTTGATTCATACAATGCTGCTGGTATTATTGCAAATAATGCAATTAAACATGTAATTTC
AAAATGTGTTGTTGGAGCATTAGTTGTTGATATTTGTCAATATGGTGATGATTTCATTGA
AGCAGAAGCAGCAAAAACATTTACAAAGAGAAAGAATTTAGAAAAGGGTATTGCATTCCC
AACATGTGTTTCAGTTAATAATTGTGTTGGTCATTTTTCACCATTAAAAGGTAATACACG
TACATTGAAACAAGGTGATGTTGTAAAGATTGATTTAGGTTGTCATATTGATGGTTACAT
TGCAGTAGGTGCACACACCATTATCATTGGTAACACATCAGCTGAATCAATGACTGGTAA
GGTTGCCGATGCAATTTGTGCTGCCCACTACGCATTGGAAGCAGCATTAAGAATGATTCG
TCCA----------