AFM487
Library AF
(Link to library)
Clone ID AFM487
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM487P
(Link to Original site)
Representative DNA sequence
>AFM487 (AFM487Q) /CSM/AF/AFM4-D/AFM487Q.Seq.d/
ACTCATCTTTTAAAGGGTAAATTGATAATGATCAATTTCTTTGTACAATAGAATATAAAA
TTTAATATATATATGAGACTAGTATTTCAATAAATCATCTAAAAAAAATAAATTTTTAAA
GATAGTTGAAATTAAAAAAAAAANGTAAAANCAATAAAAATAGAAATATTTATAGTATTA
GAAGNGAAAAAAAAAGAAAATAATAGAANCAATAAAAAAANCANCANTAATAGTAAAAAA
NCTNTTTTAAAAATAAATAAAAATAATAAAAATAATTTTATTATTAATATAATTAAAAGA
ATATGGATAAAANGGAATCAGCANCATCAGAANCCNCCTTANCATATTCATCAGANCATN
CAAAANGTTCAGAAATAATNTCAGAAGCAAGTAGTAAAGATAGTCGNGATAGTATTAAAA
TTAGAAGTAGCTTTATATCATCATCTTTATTTTTTATAAAAATATCAATATGGTTTTTTG
GATATXXXXXXXXXXTATTTCAACTTTTATTGGGTCTTAATCACCCGTTTCTTCAATACA
CTTGGTATCTACATGATCTTTAGTTTCTTGTTATATTTCGCCACTGATATCATTGGTCAA
ACGAATTTAATGACAAATAGTTATATCATAGTGGTGTTGGTCATGTGTTCCATACCCGCT
TCAATCGCTGGTGGTTATTTAGCTGATTTTTACAGTACAAAACTATTAGTATACATTAGT
AGTGGTATTCAAGTTGTGGCTATAGCTTTATTAATCACAATTTCATTCAATCCTTCATTT
GCTGGTTTGTTGATTCTATCAGGTTTCTTAGGTGTTGGTTATGGTGCTTATCAATGTGTT
GATTGGGCATTGGCACTTCATTCATTACCAAATAAAACCATTGGCAAAGATATGGGTATT
TGGCATATCTCTTTTATCGCTCCAACTGTAGTTGCTCCAGCTATCACTGGTAGCATCTTA
CAAGCTACTCAAATTACCCTTGAAAATGGTACTAAAATTTCTTCACAATATGGTTATGCT
ATTGTTTTTGGTATTAGTTCATTTTGGTTCCTTTTAGCAACAATCTTTATTTATCCAATG
AAAATTAGTGCTATTCCAAAAAATTGTTCTAGAAAAGATCAACAACAACAAACTAATAAT
CAACAATCACAAAATCAACAACAATTACAACCAACTAATAATGGTGCTGATTTAAATAAT
CATAATAATGGTAAAGAAAACCCAATAATAGAACCAGTTTAAATATTCTATTTTTAGATC
AAAAAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence
ssfkg*idndqflctieyki*yiyetsisinhlkkinf*r*lklkkkxkxnknrniysir
xekkrk**xq*kxxx***kxxfknk*k**k*fyy*yn*KNMDKXESAXSEXXLXYSSXHX
KXSEIXSEASSKDSRDSIKIRSSFISSSLFFIKISIWFFGY---

---YFNFYWVLITRFFNTLGIYMIFSFLLYFATDIIGQTNLMTNSYIIVVLVMCSIPASI
AGGYLADFYSTKLLVYISSGIQVVAIALLITISFNPSFAGLLILSGFLGVGYGAYQCVDW
ALALHSLPNKTIGKDMGIWHISFIAPTVVAPAITGSILQATQITLENGTKISSQYGYAIV
FGISSFWFLLATIFIYPMKISAIPKNCSRKDQQQQTNNQQSQNQQQLQPTNNGADLNNHN
NGKENPIIEPV*ifyf*ikk


Translated Amino Acid sequence (All Frames)
Frame A:
thllkgkliminffvq*nikfniymrlvfq*ii*kk*ifkds*n*kkxvkxikieifivl
exkkkennrxnkkxxxnskkxxlkinknnknnfiiniikriwikxnqxhqxppxhihqxx
qxvqk*xqkqvvkivxivlklevalyhhlyfl*kyqygfld---

---YFNFYWVLITRFFNTLGIYMIFSFLLYFATDIIGQTNLMTNSYIIVVLVMCSIPASI
AGGYLADFYSTKLLVYISSGIQVVAIALLITISFNPSFAGLLILSGFLGVGYGAYQCVDW
ALALHSLPNKTIGKDMGIWHISFIAPTVVAPAITGSILQATQITLENGTKISSQYGYAIV
FGISSFWFLLATIFIYPMKISAIPKNCSRKDQQQQTNNQQSQNQQQLQPTNNGADLNNHN
NGKENPIIEPV*ifyf*ikk

Frame B:
lif*rvn***sislynri*nliyi*d*yfnksskknkflkiveikkkx*xq*k*kyl*y*
kxkkkkiiexikkxxxivkxlf*k*ikiikiillli*lkeyg*xgisxirxxlxifirxx
kxfrnnxrsk**r*sx*y*n*k*lyiiififykninmvfwi---

---istfigs*spvssihlvst*slvscyisplislvkri**qivis*wcwscvpyplqs
lvvi*liftvqny*ytlvvvfklwl*ly*sqfhsilhllvc*fyqvs*vlvmvlinvlig
hwhfihyqikplakiwvfgisllslql*llqlslvasykllklplkmvlkflhnmvmllf
lvlvhfgsf*qqslfiq*klvlfqkivlekinnnkliinnhkinnnynqlimvli*iiii
mvkktq**nqfkysifrskk

Frame C:
ssfkg*idndqflctieyki*yiyetsisinhlkkinf*r*lklkkkxkxnknrniysir
xekkrk**xq*kxxx***kxxfknk*k**k*fyy*yn*KNMDKXESAXSEXXLXYSSXHX
KXSEIXSEASSKDSRDSIKIRSSFISSSLFFIKISIWFFGY---

---fqlllglnhpflqytwylhdl*flvifrh*yhwsnefndk*lyhsgvghvfhtrfnr
wwlfs*flqyktisih**wysscgysfinhnfiqsficwfvdsirflrcwlwclsmc*lg
igtsfitk*nhwqrygylaylfyrsncscssyhw*hltsysnyp*kwy*nfftiwlcycf
wy*filvpfsnnlylsnen*cyskklf*krstttn**stitksttittn**wc*fk*s**
w*rkpnnrtslnilfldqk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM487 (AFM487Q) /CSM/AF/AFM4-D/AFM487Q.Seq.d/ 1491 0.0
AFJ322 (AFJ322Q) /CSM/AF/AFJ3-A/AFJ322Q.Seq.d/ 1197 0.0
SSM685 (SSM685Q) /CSM/SS/SSM6-D/SSM685Q.Seq.d/ 940 0.0
SSM658 (SSM658Q) /CSM/SS/SSM6-C/SSM658Q.Seq.d/ 737 0.0
SSJ230 (SSJ230Q) /CSM/SS/SSJ2-B/SSJ230Q.Seq.d/ 733 0.0
SLH171 (SLH171Q) /CSM/SL/SLH1-C/SLH171Q.Seq.d/ 607 e-172
SSL423 (SSL423Q) /CSM/SS/SSL4-A/SSL423Q.Seq.d/ 565 e-160
AFH507 (AFH507Q) /CSM/AF/AFH5-A/AFH507Q.Seq.d/ 513 e-144
AFN759 (AFN759Q) /CSM/AF/AFN7-C/AFN759Q.Seq.d/ 430 e-119
SFH450 (SFH450Q) /CSM/SF/SFH4-C/SFH450Q.Seq.d/ 392 e-108

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ347043) Dictyostelium discoideum cDNA clone:dda25n22, 3' ... 1191 0.0 1
(BJ344401) Dictyostelium discoideum cDNA clone:dda19l05, 3' ... 1146 0.0 1
(C93151) Dictyostelium discoideum slug cDNA, clone SSM685. 888 0.0 2
(C93349) Dictyostelium discoideum slug cDNA, clone SSM658. 686 0.0 2
(C90853) Dictyostelium discoideum slug cDNA, clone SSJ230. 454 0.0 6
(AU039218) Dictyostelium discoideum slug cDNA, clone SLH171. 555 0.0 2
(BJ343462) Dictyostelium discoideum cDNA clone:dda16m01, 3' ... 511 e-140 1
(AU074641) Dictyostelium discoideum slug cDNA, clone SSL423. 476 e-129 1
(BJ329688) Dictyostelium discoideum cDNA clone:dda25n22, 5' ... 287 e-124 2
(BJ326349) Dictyostelium discoideum cDNA clone:dda16m01, 5' ... 274 e-120 2
dna update 2009. 4.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A75444(A75444) hypothetical protein - Deinococcus radiodurans (s... 119 2e-25
CP001213_42(CP001213|pid:none) Bifidobacterium animalis subsp. l... 81 7e-14
CP000474_3686(CP000474|pid:none) Arthrobacter aurescens TC1, com... 77 9e-13
CP001341_3726(CP001341|pid:none) Arthrobacter chlorophenolicus A... 73 2e-11
AM711867_115(AM711867|pid:none) Clavibacter michiganensis subsp.... 70 2e-10
AP009256_1209(AP009256|pid:none) Bifidobacterium adolescentis AT... 70 2e-10
CP000629_2136(CP000629|pid:none) Agrobacterium radiobacter K84 c... 67 1e-09
CP000631_179(CP000631|pid:none) Agrobacterium radiobacter K84 pl... 66 2e-09
AE014295_428(AE014295|pid:none) Bifidobacterium longum NCC2705, ... 66 3e-09
AE017221_1787(AE017221|pid:none) Thermus thermophilus HB27, comp... 65 4e-09
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM487 is

5' end seq. ID AFM487F
5' end seq.
>AFM487F.Seq
ACTCATCTTTTAAAGGGTAAATTGATAATGATCAATTTCTTTGTACAATAGAATATAAAA
TTTAATATATATATGAGACTAGTATTTCAATAAATCATCTAAAAAAAATAAATTTTTAAA
GATAGTTGAAATTAAAAAAAAAANGTAAAANCAATAAAAATAGAAATATTTATAGTATTA
GAAGNGAAAAAAAAAGAAAATAATAGAANCAATAAAAAAANCANCANTAATAGTAAAAAA
NCTNTTTTAAAAATAAATAAAAATAATAAAAATAATTTTATTATTAATATAATTAAAAGA
ATATGGATAAAANGGAATCAGCANCATCAGAANCCNCCTTANCATATTCATCAGANCATN
CAAAANGTTCAGAAATAATNTCAGAAGCAAGTAGTAAAGATAGTCGNGATAGTATTAAAA
TTAGAAGTAGCTTTATATCATCATCTTTATTTTTTATAAAAATATCAATATGGTTTTTTG
GATATXXXXXXXXXX
Length of 5' end seq. 495
3' end seq. ID AFM487Z
3' end seq.
>AFM487Z.Seq
XXXXXXXXXXTATTTCAACTTTTATTGGGTCTTAATCACCCGTTTCTTCAATACACTTGG
TATCTACATGATCTTTAGTTTCTTGTTATATTTCGCCACTGATATCATTGGTCAAACGAA
TTTAATGACAAATAGTTATATCATAGTGGTGTTGGTCATGTGTTCCATACCCGCTTCAAT
CGCTGGTGGTTATTTAGCTGATTTTTACAGTACAAAACTATTAGTATACATTAGTAGTGG
TATTCAAGTTGTGGCTATAGCTTTATTAATCACAATTTCATTCAATCCTTCATTTGCTGG
TTTGTTGATTCTATCAGGTTTCTTAGGTGTTGGTTATGGTGCTTATCAATGTGTTGATTG
GGCATTGGCACTTCATTCATTACCAAATAAAACCATTGGCAAAGATATGGGTATTTGGCA
TATCTCTTTTATCGCTCCAACTGTAGTTGCTCCAGCTATCACTGGTAGCATCTTACAAGC
TACTCAAATTACCCTTGAAAATGGTACTAAAATTTCTTCACAATATGGTTATGCTATTGT
TTTTGGTATTAGTTCATTTTGGTTCCTTTTAGCAACAATCTTTATTTATCCAATGAAAAT
TAGTGCTATTCCAAAAAATTGTTCTAGAAAAGATCAACAACAACAAACTAATAATCAACA
ATCACAAAATCAACAACAATTACAACCAACTAATAATGGTGCTGATTTAAATAATCATAA
TAATGGTAAAGAAAACCCAATAATAGAACCAGTTTAAATATTCTATTTTTAGATCAAAAA
AA
Length of 3' end seq. 782
Connected seq. ID AFM487P
Connected seq.
>AFM487P.Seq
ACTCATCTTTTAAAGGGTAAATTGATAATGATCAATTTCTTTGTACAATAGAATATAAAA
TTTAATATATATATGAGACTAGTATTTCAATAAATCATCTAAAAAAAATAAATTTTTAAA
GATAGTTGAAATTAAAAAAAAAANGTAAAANCAATAAAAATAGAAATATTTATAGTATTA
GAAGNGAAAAAAAAAGAAAATAATAGAANCAATAAAAAAANCANCANTAATAGTAAAAAA
NCTNTTTTAAAAATAAATAAAAATAATAAAAATAATTTTATTATTAATATAATTAAAAGA
ATATGGATAAAANGGAATCAGCANCATCAGAANCCNCCTTANCATATTCATCAGANCATN
CAAAANGTTCAGAAATAATNTCAGAAGCAAGTAGTAAAGATAGTCGNGATAGTATTAAAA
TTAGAAGTAGCTTTATATCATCATCTTTATTTTTTATAAAAATATCAATATGGTTTTTTG
GATAT----------TATTTCAACTTTTATTGGGTCTTAATCACCCGTTTCTTCAATACA
CTTGGTATCTACATGATCTTTAGTTTCTTGTTATATTTCGCCACTGATATCATTGGTCAA
ACGAATTTAATGACAAATAGTTATATCATAGTGGTGTTGGTCATGTGTTCCATACCCGCT
TCAATCGCTGGTGGTTATTTAGCTGATTTTTACAGTACAAAACTATTAGTATACATTAGT
AGTGGTATTCAAGTTGTGGCTATAGCTTTATTAATCACAATTTCATTCAATCCTTCATTT
GCTGGTTTGTTGATTCTATCAGGTTTCTTAGGTGTTGGTTATGGTGCTTATCAATGTGTT
GATTGGGCATTGGCACTTCATTCATTACCAAATAAAACCATTGGCAAAGATATGGGTATT
TGGCATATCTCTTTTATCGCTCCAACTGTAGTTGCTCCAGCTATCACTGGTAGCATCTTA
CAAGCTACTCAAATTACCCTTGAAAATGGTACTAAAATTTCTTCACAATATGGTTATGCT
ATTGTTTTTGGTATTAGTTCATTTTGGTTCCTTTTAGCAACAATCTTTATTTATCCAATG
AAAATTAGTGCTATTCCAAAAAATTGTTCTAGAAAAGATCAACAACAACAAACTAATAAT
CAACAATCACAAAATCAACAACAATTACAACCAACTAATAATGGTGCTGATTTAAATAAT
CATAATAATGGTAAAGAAAACCCAATAATAGAACCAGTTTAAATATTCTATTTTTAGATC
AAAAAAA
Length of connected seq. 1257
Full length Seq ID -
Full length Seq. -
Length of full length seq. -