>VFF594 (VFF594Q) /CSM/VF/VFF5-D/VFF594Q.Seq.d/
XXXXXXXXXXACTATATCCAAATTTGGGATCAATANGCTGATGGTGAATGTGTTGATGTT
TCATATGCTTCAATGATCGCTCANAATCNNNATGTTNCCAATGATGAAAATGCCATTGGT
GGTAGAATGTGGTTCTATCAAACTTGTGTTGAATTTGGTNANTATCATCCAAGTNATGCT
CCATCTGCANATCNACCATTTGGTNATTTATTNCCATTCCAACCNTATCAAATTCAACAA
TGTGCCGATAGTTTTGGTATTCCANATATGTATCCAAACGTTAATTGGACAATCCCTGAA
TATGGTGGTATTAANCCAGNACCNTCCTCTGTTGATAATACCTTANATGTAA

---YIQIWDQXADGECVDVSYASMIAXNXXVXNDENAIGGRMWFYQTCVEFGXYHPSXAP
SAXXPFGXLXPFQPYQIQQCADSFGIPXMYPNVNWTIPEYGGIXPXPSSVDNTLXV

Frame A:
---lypnlgsix*w*mc*cficfndrsxsxcxq**kchww*nvvlsnlc*iwxxsskxcs
icxstiwxfixiptxsnstmcr*fwysxyvskr*ldnp*iwwy*xxtxlc**ylxc


Frame B:
---YIQIWDQXADGECVDVSYASMIAXNXXVXNDENAIGGRMWFYQTCVEFGXYHPSXAP
SAXXPFGXLXPFQPYQIQQCADSFGIPXMYPNVNWTIPEYGGIXPXPSSVDNTLXV


Frame C:
---iskfginxlmvnvlmfhmlq*slxixmxpmmkmplvvecgsiklvlnlvxiiqvmlh
lxixhlviyxhsnxikfnnvpivlvfxiciqtligqslnmvvlxqxxplliipxm*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFF594 (VFF594Q) /CSM/VF/VFF5-D/VFF594Q.Seq.d/                        565   e-160
VFF689 (VFF689Q) /CSM/VF/VFF6-D/VFF689Q.Seq.d/                        549   e-156
VSH135 (VSH135Q) /CSM/VS/VSH1-B/VSH135Q.Seq.d/                        541   e-153
VHC486 (VHC486Q) /CSM/VH/VHC4-D/VHC486Q.Seq.d/                        541   e-153
VFO865 (VFO865Q) /CSM/VF/VFO8-C/VFO865Q.Seq.d/                        541   e-153
VFO856 (VFO856Q) /CSM/VF/VFO8-C/VFO856Q.Seq.d/                        541   e-153
VFO841 (VFO841Q) /CSM/VF/VFO8-B/VFO841Q.Seq.d/                        541   e-153
VFO761 (VFO761Q) /CSM/VF/VFO7-C/VFO761Q.Seq.d/                        541   e-153
VFO647 (VFO647Q) /CSM/VF/VFO6-B/VFO647Q.Seq.d/                        541   e-153
VFO629 (VFO629Q) /CSM/VF/VFO6-B/VFO629Q.Seq.d/                        541   e-153

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BB596307|BB596307.1 Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230005P21, 5' end partial sequence.    42  4.4  1
AC096724|AC096724.1 Homo sapiens chromosome 4 clone RP11-25A13, WORKING DRAFT SEQUENCE, 39 unordered pieces.    40     18  1
AL136095|AL136095.25 Human DNA sequence from clone RP1-25L16 on chromosome 6.    40     18  1
AI055440|AI055440.1 coau0004A04 Cotton Boll Abscission Zone cDNA Library Gossypium hirsutum cDNA clone coau0004A04 5', mRNA sequence.    40     18  1
AC092537|AC092537.4 Homo sapiens BAC clone RP11-45E17 from 4, complete sequence.    40     18  1
BQ113272|BQ113272.2 EST598848 mixed potato tissues Solanum tuberosum cDNA clone STMCM44 5' end, mRNA sequence.    40     18  1
BQ047626|BQ047626.1 EST596744 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI18C18 5' end, mRNA sequence.    40     18  1
AC138377|AC138377.2 Mus musculus chromosome 17 clone RP24-347C11 map 17, WORKING DRAFT SEQUENCE, 10 unordered pieces.    40     18  1
BI432760|BI432760.1 EST535521 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCAU96 5' sequence, mRNA sequence.    40     18  1
AC087655|AC087655.2 Homo sapiens chromosome 11 clone RP4-578N1 map 11, *** SEQUENCING IN PROGRESS ***, 45 unordered pieces.    40     18  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC161646_1(BC161646|pid:none) Xenopus tropicalis hypothetical pr...    57   3e-07
BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495...    49   5e-05
(Q9QXE5) RecName: Full=Thymus-specific serine protease;         ...    49   5e-05
(Q9NQE7) RecName: Full=Thymus-specific serine protease;         ...    48   1e-04
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei...    48   1e-04
AL021808_1(AL021808|pid:none) Human DNA sequence from clone XXba...    48   1e-04
BC104722_1(BC104722|pid:none) Rattus norvegicus protease, serine...    47   2e-04
AE014297_2751(AE014297|pid:none) Drosophila melanogaster chromos...    47   3e-04
AE014296_1236(AE014296|pid:none) Drosophila melanogaster chromos...    46   5e-04
AE014297_2752(AE014297|pid:none) Drosophila melanogaster chromos...    43   0.003

 psg: 0.75  gvh: 0.39  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VFF594 is cyt

>VFF594Z.Seq
----------ACTATATCCAAATTTGGGATCAATANGCTGATGGTGAATGTGTTGATGTT
TCATATGCTTCAATGATCGCTCANAATCNNNATGTTNCCAATGATGAAAATGCCATTGGT
GGTAGAATGTGGTTCTATCAAACTTGTGTTGAATTTGGTNANTATCATCCAAGTNATGCT
CCATCTGCANATCNACCATTTGGTNATTTATTNCCATTCCAACCNTATCAAATTCAACAA
TGTGCCGATAGTTTTGGTATTCCANATATGTATCCAAACGTTAATTGGACAATCCCTGAA
TATGGTGGTATTAANCCAGNACCNTCCTCTGTTGATAATACCTTANATGTAA