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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFF539
Library VF
(Link to library)
Clone ID VFF539
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID VFF539P
(Link to Original site)
Representative DNA sequence 
>VFF539 (VFF539Q) /CSM/VF/VFF5-B/VFF539Q.Seq.d/
AATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTT
AACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAA
TGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGA
ACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGT
TACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAG
AACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGA
AAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGT
CGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCA
TACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTT
AGGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACC
AAAATCATATCGTCATATGCATGGTTTCTCATCACATACCTTAAAATTTGTTAATGCTCA
AXXXXXXXXXXGTCACACAAAGACTATCCATTAATTCAAAATTGGTCGTATGGTTTTGAA
TCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACAT
GGTTCCAGGTATTGAACCTTCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCC
AGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATT
CGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAA
TGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGA
ATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCC
AAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATC
TCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGT
TCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGG
TCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTGTAAATCAAT
ATATTANAAATAATAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRE
RIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSE
RDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFL
GQTPESTHQVSILFSDRGTPKSYRHMHGFSSHTLKFVNAQ---

---SHKDYPLIQNWSYGFES*srellc*s*tsclltiphgsry*tftr*dvtrsslllsr
yssssfrcklstnpsqlsirrkgwc*klpt*wfhgcqw*ww*rsklstklfrwsratsri
cst*i*rlwfrcsstiqssk*rlcstr*fi*thv*rcqisfrl*fsrshvrchhqrnsss
crfkllqg*qrfrcsfm*gswy*c**chqirc*ikl*inilxiik
Translated Amino Acid sequence (All Frames) 
Frame A:
nifylgkink*inkyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tcsfrs*
typrtcctc*rcwcpwlfrsylk*ctkmv*s*ilk*sw*entnlhpflycww*krfirf*
krskrfrcqily*rr*l*ygr**yssflys*sikiprfhsytkt*stnkl*rskyvlgff
rsntrintssinfil**rytkiissyawflitylkic*cs---

---vtqrlsinsklvvwf*iviqritllklnklpshhptwfqvlnlhqircykvvssliq
iliviv*v*tinksqsivhsp*rvvlkttnvmvswlsmvmvvkvqtinqtlsvvqshiqn
llninltslvsllvnhtiiqmttlfnqviyidsclkmpnlvssli*svtcpvspskkfkf
vpfqtftrltki*vlvyvrvlvlmlmmssnslldqtvnqyixnnkk

Frame B:
iyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRE
RIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSE
RDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFL
GQTPESTHQVSILFSDRGTPKSYRHMHGFSSHTLKFVNAQ---

---SHKDYPLIQNWSYGFES*srellc*s*tsclltiphgsry*tftr*dvtrsslllsr
yssssfrcklstnpsqlsirrkgwc*klpt*wfhgcqw*ww*rsklstklfrwsratsri
cst*i*rlwfrcsstiqssk*rlcstr*fi*thv*rcqisfrl*fsrshvrchhqrnsss
crfkllqg*qrfrcsfm*gswy*c**chqirc*ikl*inilxiik

Frame C:
yilfgknk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linllisivn
vsqnvlymlkvlvpmvisklpqvmyqngvklns*iklvrehqsspvslllvvkkvhpilk
eiqevslsnfilkkvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfgif*
vkhqnqhikyqfyslievhqnhivicmvshhip*nllml---

---htktih*fkigrmvlnrnpenyfaeveqaafspshmvpgiepspdkmlqgrlfsypd
thrhrlgvnyqqipvncpfavkggvknyqrdgfmavngnggkgpnyqpnsfggpephpef
aqhkfdvsgfaarqpynhpnddfvqpgdlyrlmsedaksrfvsnlvghmsgvtikeiqvr
avsnfykadkdlgarlckglgidvndvikfaarsncksiyxk**k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFF539 (VFF539Q) /CSM/VF/VFF5-B/VFF539Q.Seq.d/                       2504   0.0
SFJ415 (SFJ415Q) /CSM/SF/SFJ4-A/SFJ415Q.Seq.d/                       1289   0.0
SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/                       1283   0.0
FC-AH16 (FC-AH16Q) /CSM/FC/FC-AH/FC-AH16Q.Seq.d/                     1283   0.0
CHD605 (CHD605Q) /CSM/CH/CHD6-A/CHD605Q.Seq.d/                       1283   0.0
FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/                        1283   0.0
CFC537 (CFC537Q) /CSM/CF/CFC5-B/CFC537Q.Seq.d/                       1283   0.0
AFN369 (AFN369Q) /CSM/AF/AFN3-C/AFN369Q.Seq.d/                       1283   0.0
AFM893 (AFM893Q) /CSM/AF/AFM8-D/AFM893Q.Seq.d/                       1283   0.0
AFM764 (AFM764Q) /CSM/AF/AFM7-C/AFM764Q.Seq.d/                       1283   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds.  1223  0.0  4
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1205  0.0  6
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds.   111  1e-62  7
AP004595|AP004595.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13.    72  3e-31  6
AX536932|AX536932.1 Sequence 533 from Patent WO02064766.         101  3e-29  3
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type.    76  1e-27  3
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR.    76  1e-27  3
AB006327|AB006327.1 Candida albicans mRNA for catalase, complete cds.    94  8e-27  3
U40704|U40704.1 Candida albicans catalase (Cat) gene, complete cds.    86  1e-26  3
AE006036|AE006036.1 Pasteurella multocida PM70 section 3 of 204 of the complete genome.    98  6e-23  4
dna update 2003. 9.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ...   431   e-119
AB458257_1(AB458257|pid:none) Brachionus plicatilis Ctl mRNA for...   390   e-107
AE008692_918(AE008692|pid:none) Zymomonas mobilis subsp. mobilis...   367   e-100
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c...   330   9e-89
EF687775_1(EF687775|pid:none) Crassostrea gigas catalase mRNA, c...   322   3e-86
(O93662) RecName: Full=Catalase;          EC=1.11.1.6;  &AJ00593...   321   4e-86
(P0A326) RecName: Full=Catalase;          EC=1.11.1.6;  &(P0A327...   314   5e-84
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62...   313   7e-84
(Q8FWU0) RecName: Full=Catalase;          EC=1.11.1.6;  &AE01429...   313   9e-84
CP000873_333(CP000873|pid:none) Brucella canis ATCC 23365 chromo...   312   2e-83
protein update 2009. 6.19
PSORT 

 psg: 0.89  gvh: 0.57  alm: 0.44  top: 0.40  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: extracellular, including cell wall
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VFF539 is cyt
5' end seq. ID VFF539F
5' end seq. 
>VFF539F.Seq
AATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTT
AACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAA
TGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGA
ACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGT
TACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAG
AACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGA
AAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGT
CGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCA
TACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTT
AGGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACC
AAAATCATATCGTCATATGCATGGTTTCTCATCACATACCTTAAAATTTGTTAATGCTCA
A----------
Length of 5' end seq. 661
3' end seq. ID VFF539Z
3' end seq. 
>VFF539Z.Seq
----------GTCACACAAAGACTATCCATTAATTCAAAATTGGTCGTATGGTTTTGAAT
CGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATG
GTTCCAGGTATTGAACCTTCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCA
GATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTC
GCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAAT
GGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAA
TTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCA
AATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCT
CGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTT
CGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGT
CTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTGTAAATCAATA
TATTANAAATAATAAAAAA
Length of 3' end seq. 669
Connected seq. ID VFF539P
Connected seq. 
>VFF539P.Seq
AATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTT
AACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAA
TGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGA
ACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGT
TACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAG
AACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGA
AAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGT
CGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCA
TACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTT
AGGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACC
AAAATCATATCGTCATATGCATGGTTTCTCATCACATACCTTAAAATTTGTTAATGCTCA
A----------GTCACACAAAGACTATCCATTAATTCAAAATTGGTCGTATGGTTTTGAA
TCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACAT
GGTTCCAGGTATTGAACCTTCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCC
AGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATT
CGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAA
TGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGA
ATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCC
AAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATC
TCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGT
TCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGG
TCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTGTAAATCAAT
ATATTANAAATAATAAAAAA
Length of connected seq. 1330
Full length Seq ID -
Full length Seq. -
Length of full length seq. -