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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM475
Library AF
(Link to library)
Clone ID AFM475
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM475 (AFM475Q) /CSM/AF/AFM4-D/AFM475Q.Seq.d/
XXXXXXXXXXGTTGTGATGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAAAAC
AAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTA
TTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCA
GAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCC
CATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACT
GAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGT
CCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAA
TCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAA
AATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAG
AATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAG
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---CDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSE
ISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGP
VLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKN
NCGIASVSSYPLA*
Translated Amino Acid sequence (All Frames) 
Frame A:
---l*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*i*ywcnh*rlc*hycrfr
dfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcfscwlwcsr*r**rs
sikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgykrlhfnvkg*ke
*lwycis*llstcl


Frame B:
---CDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSE
ISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGP
VLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKN
NCGIASVSSYPLA*


Frame C:
---vmvv**imhliislktrvltlkvvihillklvqhvysinlilvqplkvmltllpvqr
fh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf*llvmvfkvkmmkvq
y*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*kvtf*cqrieri
ivvlhqlalihlp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1140   0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                       1140   0.0
SFK650 (SFK650Q) /CSM/SF/SFK6-C/SFK650Q.Seq.d/                       1140   0.0
SFC863 (SFC863Q) /CSM/SF/SFC8-C/SFC863Q.Seq.d/                       1140   0.0
CFH558 (CFH558Q) /CSM/CF/CFH5-C/CFH558Q.Seq.d/                       1140   0.0
AFO852 (AFO852Q) /CSM/AF/AFO8-C/AFO852Q.Seq.d/                       1140   0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/                       1140   0.0
AFM621 (AFM621Q) /CSM/AF/AFM6-A/AFM621Q.Seq.d/                       1140   0.0
AFM502 (AFM502Q) /CSM/AF/AFM5-A/AFM502Q.Seq.d/                       1140   0.0
AFM475 (AFM475Q) /CSM/AF/AFM4-D/AFM475Q.Seq.d/                       1140   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X03344) Dictyostelium discoideum mRNA for cysteine proteina...  1138   0.0    1
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462.       1138   0.0    1
(C91266) Dictyostelium discoideum slug cDNA, clone SSJ524.       1138   0.0    1
(BJ401212) Dictyostelium discoideum cDNA clone:dds22c14, 3' ...  1138   0.0    1
(BJ399605) Dictyostelium discoideum cDNA clone:dds6n16, 3' e...  1138   0.0    1
(BJ376299) Dictyostelium discoideum cDNA clone:ddc21o20, 3' ...  1138   0.0    1
(BJ374846) Dictyostelium discoideum cDNA clone:ddc16c15, 3' ...  1138   0.0    1
(BJ347103) Dictyostelium discoideum cDNA clone:dda26i06, 3' ...  1138   0.0    1
(BJ347067) Dictyostelium discoideum cDNA clone:dda26c01, 3' ...  1138   0.0    1
(BJ347002) Dictyostelium discoideum cDNA clone:dda25f20, 3' ...  1138   0.0    1
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   377   e-103
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   206   5e-52
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   206   5e-52
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   189   5e-47
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   188   8e-47
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   187   2e-46
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   184   1e-45
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like...   183   3e-45
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like...   183   3e-45
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   182   7e-45
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM475 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM475Z
3' end seq. 
>AFM475Z.Seq
XXXXXXXXXXGTTGTGATGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAAAAC
AAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTA
TTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCA
GAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCC
CATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACT
GAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGT
CCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAA
TCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAA
AATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAG
AATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAG
Length of 3' end seq. 585
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -