AFM474
Library AF
(Link to library)
Clone ID AFM474
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM474P
(Link to Original site)
Representative DNA sequence
>AFM474 (AFM474Q) /CSM/AF/AFM4-D/AFM474Q.Seq.d/
CAACATGTTCAAAATTTTTTTTAAATTACCCGTCCAAACTTCATTAGTGTCAAAATCAAG
ATCAATTCAATTTAATTATTCAACAAAAAGTAATATTAGAAATATGGAACAATACTTACC
ACAAGCTAAGGAATTTATTTCATTTATTGATAAATCACCATCACCATATCATGCAGTTCA
ATACTTTTCAGAGATTTTAAAGAGTAAAGGTTTCATTCATTTATCAGAGAAACAAATGTG
GGATATTCAACCAAATAAAAAATATTTCTTTACTCGTAATCAATCATGTATTTCTGCTTT
TGCAGTTGGTGGTAAATATAAACCAGGTAATGGTTTTAATATTGCAGCAGCACATACTGA
TAGTCCAAATTTTAAAGTTAGACCAGTATCAAAAGTTGAATCAGTTGGATATCAACAAGT
TGGTGTTGAAACATATGGTGGTGGATTATGGTATACATGGTTTGATCGTGATTTAACCGT
TGCAGGTAGAGTCATTGTTAAATCAGGTGATGGTAGTTATGAGAGTAXXXXXXXXXXTTA
TCAGTTTGCGATACTCAACCAGCTGCAATCGGTGGTGCACTTGATGAATTCATTTTCTCA
CCACGTTGTGATAATTTGGGTATGTCATATTGCGCAATGATTGGTTTATTGAATGTCAAA
GAATCAACATTGGCACAAGAGGAGAATGTATTGAATGTGATATTATTCGATAATGAAGAG
GTTGGCTCAAGTTCACCACAAGGTGCATGTGCACCATTGATCAATGATACCATTAGTCGT
GTCAATAGCTCAATGTTTGCATCCACTTGTAAACCACATGAATTAAACAATTTCATTGAT
TTAACTTTAAGAAATAGTTTCTTAATCTCTGCTGATATGGCACATGCTATTCATCCAAAT
TACACAGCAAATCATGAACCACTTCATAGACCAGCTCTTGATAAAGGTCCAGTAATCAAA
TATAATGCAAATTTACGTTATGCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATATC
TGTAAAAAGAATGGTATCCCAATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTGGC
TCAACAATTGGTCCAATCATTTCTGGTACTTATGGTATTAGAACTGTAGATATTGGTAAT
CCACAATTATCAATGCATTCAATTCGTGAAACTTGTGGTGTTGCTGATATCACTCATGGT
ATTAATTTAATTCAAAAATATTTTGAACAATTTACAAAATTAGATATTATTAAATCNATT
TAGAATAAAAATTAAAAAAAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence
NMFKIFFKLPVQTSLVSKSRSIQFNYSTKSNIRNMEQYLPQAKEFISFIDKSPSPYHAVQ
YFSEILKSKGFIHLSEKQMWDIQPNKKYFFTRNQSCISAFAVGGKYKPGNGFNIAAAHTD
SPNFKVRPVSKVESVGYQQVGVETYGGGLWYTWFDRDLTVAGRVIVKSGDGSYES---

---LSVCDTQPAAIGGALDEFIFSPRCDNLGMSYCAMIGLLNVKESTLAQEENVLNVILF
DNEEVGSSSPQGACAPLINDTISRVNSSMFASTCKPHELNNFIDLTLRNSFLISADMAHA
IHPNYTANHEPLHRPALDKGPVIKYNANLRYASNGPTSFVILDICKKNGIPIQEFLVKND
SPCGSTIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVADITHGINLIQKYFEQFTKLDI
IKSI*nkn*kk


Translated Amino Acid sequence (All Frames)
Frame A:
qhvqnff*itrpnfisvkikinsi*lfnkk*y*kygtiltts*giyfiy**ititiscss
ilfrdfke*rfhsfiretnvgystk*kiflys*simyfcfcsww*i*tr*wf*ycssty*
*skf*s*tsiks*iswistswc*niwwwimvymv*s*fnrcr*shc*ir*w*l*e---

---LSVCDTQPAAIGGALDEFIFSPRCDNLGMSYCAMIGLLNVKESTLAQEENVLNVILF
DNEEVGSSSPQGACAPLINDTISRVNSSMFASTCKPHELNNFIDLTLRNSFLISADMAHA
IHPNYTANHEPLHRPALDKGPVIKYNANLRYASNGPTSFVILDICKKNGIPIQEFLVKND
SPCGSTIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVADITHGINLIQKYFEQFTKLDI
IKSI*nkn*kk

Frame B:
NMFKIFFKLPVQTSLVSKSRSIQFNYSTKSNIRNMEQYLPQAKEFISFIDKSPSPYHAVQ
YFSEILKSKGFIHLSEKQMWDIQPNKKYFFTRNQSCISAFAVGGKYKPGNGFNIAAAHTD
SPNFKVRPVSKVESVGYQQVGVETYGGGLWYTWFDRDLTVAGRVIVKSGDGSYES---

---yqfailnqlqsvvhlmnsfshhvviiwvchiaq*lvy*msknqhwhkrrmy*m*yys
imkrlaqvhhkvhvhh*smiplvvsiaqclhplvnhmn*tisli*l*eivs*slliwhml
fiqitqqimnhfidqllikvq*snimqiyvmlqmvqlvllswisvkrmvsqfknssskmi
hhvaqqlvqsflvlmvlel*ilvihnyqciqfvklvvllislmvli*fknilnnlqn*il
lnxfrikikkk

Frame C:
tcskfflnypsklh*cqnqdqfnliiqqkvileiwnntyhklrnlfhllinhhhhimqfn
tfqrf*rvkvsfiyqrnkcgifnqiknisllvinhvflllqlvvninqvmvlilqqhili
vqilkldqyqklnqldinklvlkhmvvdygihglivi*plqvesllnqvmvvmrv---

---islrystscnrwct**ihflttl**fgyvilrndwfiecqrinigtrgeciecdiir
**rgwlkfttrcmctidq*yh*scq*lnvcihl*tt*ikqfh*fnfkk*flnlc*ygtcy
ssklhsks*tts*tss**rssnqi*ckftlcfkwsn*fcylgyl*kewypnsriprqk*f
tmwlnnwsnhfwylwy*ncryw*stiinafns*nlwcc*yhswy*fnskif*tiykiryy
*ixle*klkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM474 (AFM474Q) /CSM/AF/AFM4-D/AFM474Q.Seq.d/ 2415 0.0
SFD324 (SFD324Q) /CSM/SF/SFD3-A/SFD324Q.Seq.d/ 1437 0.0
AFM822 (AFM822Q) /CSM/AF/AFM8-A/AFM822Q.Seq.d/ 1437 0.0
SFB870 (SFB870Q) /CSM/SF/SFB8-C/SFB870Q.Seq.d/ 1431 0.0
CHD160 (CHD160Q) /CSM/CH/CHD1-C/CHD160Q.Seq.d/ 1409 0.0
SFI601 (SFI601Q) /CSM/SF/SFI6-A/SFI601Q.Seq.d/ 1407 0.0
SSC761 (SSC761Q) /CSM/SS/SSC7-C/SSC761Q.Seq.d/ 1405 0.0
AFK888 (AFK888Q) /CSM/AF/AFK8-D/AFK888Q.Seq.d/ 1403 0.0
AFK818 (AFK818Q) /CSM/AF/AFK8-A/AFK818Q.Seq.d/ 1402 0.0
AFG673 (AFG673Q) /CSM/AF/AFG6-D/AFG673Q.Seq.d/ 1400 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ346991) Dictyostelium discoideum cDNA clone:dda25d20, 3' ... 1340 0.0 1
(BJ434448) Dictyostelium discoideum cDNA clone:ddv16k22, 3' ... 1324 0.0 1
(BJ402996) Dictyostelium discoideum cDNA clone:dds18a02, 3' ... 1324 0.0 1
(BJ399730) Dictyostelium discoideum cDNA clone:dds7p05, 3' e... 1324 0.0 1
(BJ399191) Dictyostelium discoideum cDNA clone:dds4l18, 3' e... 1324 0.0 1
(BJ347118) Dictyostelium discoideum cDNA clone:dda26l06, 3' ... 1324 0.0 1
(BJ343101) Dictyostelium discoideum cDNA clone:dda22d06, 3' ... 1324 0.0 1
(BJ343398) Dictyostelium discoideum cDNA clone:dda22p22, 3' ... 1320 0.0 1
(BJ347619) Dictyostelium discoideum cDNA clone:dda27k15, 3' ... 1308 0.0 1
(C92006) Dictyostelium discoideum slug cDNA, clone SSC761. 1306 0.0 1
dna update 2009. 4.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54M70) RecName: Full=Aspartyl aminopeptidase; EC=3.4.... 480 e-134
AC159446_25(AC159446|pid:none) Trypanosoma brucei chromosome 3 c... 242 2e-62
EU954490_1(EU954490|pid:none) Zea mays clone 1468685 unknown mRNA. 238 4e-61
BT062007_1(BT062007|pid:none) Zea mays full-length cDNA clone ZM... 238 4e-61
CP000592_232(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 230 7e-59
AM494966_233(AM494966|pid:none) Leishmania braziliensis chromoso... 229 1e-58
CR954212_224(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 229 1e-58
AB026632_4(AB026632|pid:none) Arabidopsis thaliana genomic DNA, ... 229 2e-58
AJ720587_1(AJ720587|pid:none) Gallus gallus mRNA for hypothetica... 228 4e-58
AY085075_1(AY085075|pid:none) Arabidopsis thaliana clone 126533 ... 227 6e-58
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM474 is

5' end seq. ID AFM474F
5' end seq.
>AFM474F.Seq
CAACATGTTCAAAATTTTTTTTAAATTACCCGTCCAAACTTCATTAGTGTCAAAATCAAG
ATCAATTCAATTTAATTATTCAACAAAAAGTAATATTAGAAATATGGAACAATACTTACC
ACAAGCTAAGGAATTTATTTCATTTATTGATAAATCACCATCACCATATCATGCAGTTCA
ATACTTTTCAGAGATTTTAAAGAGTAAAGGTTTCATTCATTTATCAGAGAAACAAATGTG
GGATATTCAACCAAATAAAAAATATTTCTTTACTCGTAATCAATCATGTATTTCTGCTTT
TGCAGTTGGTGGTAAATATAAACCAGGTAATGGTTTTAATATTGCAGCAGCACATACTGA
TAGTCCAAATTTTAAAGTTAGACCAGTATCAAAAGTTGAATCAGTTGGATATCAACAAGT
TGGTGTTGAAACATATGGTGGTGGATTATGGTATACATGGTTTGATCGTGATTTAACCGT
TGCAGGTAGAGTCATTGTTAAATCAGGTGATGGTAGTTATGAGAGTAXXXXXXXXXX
Length of 5' end seq. 537
3' end seq. ID AFM474Z
3' end seq.
>AFM474Z.Seq
XXXXXXXXXXTTATCAGTTTGCGATACTCAACCAGCTGCAATCGGTGGTGCACTTGATGA
ATTCATTTTCTCACCACGTTGTGATAATTTGGGTATGTCATATTGCGCAATGATTGGTTT
ATTGAATGTCAAAGAATCAACATTGGCACAAGAGGAGAATGTATTGAATGTGATATTATT
CGATAATGAAGAGGTTGGCTCAAGTTCACCACAAGGTGCATGTGCACCATTGATCAATGA
TACCATTAGTCGTGTCAATAGCTCAATGTTTGCATCCACTTGTAAACCACATGAATTAAA
CAATTTCATTGATTTAACTTTAAGAAATAGTTTCTTAATCTCTGCTGATATGGCACATGC
TATTCATCCAAATTACACAGCAAATCATGAACCACTTCATAGACCAGCTCTTGATAAAGG
TCCAGTAATCAAATATAATGCAAATTTACGTTATGCTTCAAATGGTCCAACTAGTTTTGT
TATCTTGGATATCTGTAAAAAGAATGGTATCCCAATTCAAGAATTCCTCGTCAAAAATGA
TTCACCATGTGGCTCAACAATTGGTCCAATCATTTCTGGTACTTATGGTATTAGAACTGT
AGATATTGGTAATCCACAATTATCAATGCATTCAATTCGTGAAACTTGTGGTGTTGCTGA
TATCACTCATGGTATTAATTTAATTCAAAAATATTTTGAACAATTTACAAAATTAGATAT
TATTAAATCNATTTAGAATAAAAATTAAAAAAAAA
Length of 3' end seq. 755
Connected seq. ID AFM474P
Connected seq.
>AFM474P.Seq
CAACATGTTCAAAATTTTTTTTAAATTACCCGTCCAAACTTCATTAGTGTCAAAATCAAG
ATCAATTCAATTTAATTATTCAACAAAAAGTAATATTAGAAATATGGAACAATACTTACC
ACAAGCTAAGGAATTTATTTCATTTATTGATAAATCACCATCACCATATCATGCAGTTCA
ATACTTTTCAGAGATTTTAAAGAGTAAAGGTTTCATTCATTTATCAGAGAAACAAATGTG
GGATATTCAACCAAATAAAAAATATTTCTTTACTCGTAATCAATCATGTATTTCTGCTTT
TGCAGTTGGTGGTAAATATAAACCAGGTAATGGTTTTAATATTGCAGCAGCACATACTGA
TAGTCCAAATTTTAAAGTTAGACCAGTATCAAAAGTTGAATCAGTTGGATATCAACAAGT
TGGTGTTGAAACATATGGTGGTGGATTATGGTATACATGGTTTGATCGTGATTTAACCGT
TGCAGGTAGAGTCATTGTTAAATCAGGTGATGGTAGTTATGAGAGTA----------TTA
TCAGTTTGCGATACTCAACCAGCTGCAATCGGTGGTGCACTTGATGAATTCATTTTCTCA
CCACGTTGTGATAATTTGGGTATGTCATATTGCGCAATGATTGGTTTATTGAATGTCAAA
GAATCAACATTGGCACAAGAGGAGAATGTATTGAATGTGATATTATTCGATAATGAAGAG
GTTGGCTCAAGTTCACCACAAGGTGCATGTGCACCATTGATCAATGATACCATTAGTCGT
GTCAATAGCTCAATGTTTGCATCCACTTGTAAACCACATGAATTAAACAATTTCATTGAT
TTAACTTTAAGAAATAGTTTCTTAATCTCTGCTGATATGGCACATGCTATTCATCCAAAT
TACACAGCAAATCATGAACCACTTCATAGACCAGCTCTTGATAAAGGTCCAGTAATCAAA
TATAATGCAAATTTACGTTATGCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATATC
TGTAAAAAGAATGGTATCCCAATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTGGC
TCAACAATTGGTCCAATCATTTCTGGTACTTATGGTATTAGAACTGTAGATATTGGTAAT
CCACAATTATCAATGCATTCAATTCGTGAAACTTGTGGTGTTGCTGATATCACTCATGGT
ATTAATTTAATTCAAAAATATTTTGAACAATTTACAAAATTAGATATTATTAAATCNATT
TAGAATAAAAATTAAAAAAAAA
Length of connected seq. 1272
Full length Seq ID -
Full length Seq. -
Length of full length seq. -