AFM473
Library AF
(Link to library)
Clone ID AFM473
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM473P
(Link to Original site)
Representative DNA sequence
>AFM473 (AFM473Q) /CSM/AF/AFM4-D/AFM473Q.Seq.d/
AATTTCATCATTTTCCCATTAAAACAAACAATGTCTTCATCAAGATTAATTAAATGTTTA
AGTTCAAACAATTATATTGTTAGATCTTTCTCAAAATCATCAATTCCAACCACACCAACA
CCAGATTTTCCAGGTGAATATAAAGAACCAATTGTAAAGACACAAATCCCAGGTCCACAA
TCTAAAGCTTTAATTGAAAGATTAAATAAACTCCAAGATCCAAGAGCTGCTCATTTCTTT
GCTGATTATGCAAATTCAAGAGGTAATTATATTTCAGATGTTGATGGTAATATTTTATTA
GATTTATATTGTCAAATTGCATCAATTCCAATTGGTTATAATAATCCAGAATTAATTAAA
GCAGCAAAATCTGATAGATGGGTATCAGCAATTATTAATCGTCCATCATTGGGTGTACTT
CCACCAAAGGATTGGCCAGCATTAATTGAGAATTCATTTATGCAAGTATCACCAAAAGGT
TTGAATCAAGTATTCACAGCAATGTGTGGATCATGTGCAAATGAATGTGCCTACAAAGCA
GTTTTCATGCATTATCAACATGTTAAACGTXXXXXXXXXXTTGGCTGAACATGCTAAAGA
GAATAGAGAAATCGAAGATAGATGTTTACAAGAGGTTGAACAACTCATTAAAACATGGCA
TATCCCAGTCGCTGGTATCATCGTTGAACCAATTCAAGCTGAAGGTGGTGATAACTATGC
CACTCCTTACTTCTTCCAAGGCTTAAGAGATATCACCAAGAAACATGGTGTCTCTATGAT
CGTCGATGAAGTTCAAACTGGTATGGGTGCCACTGGTAAATTCTGGGCTCACGAACATTG
GAATCTCACCTCTCCACCAGATATTGTCACCTTCTCAAAGAAGATGCAAGCCGCTGGTTT
CTATCATAATTTGGATTACCGTCCATCCGAATCCTATCGTAACTTTAACACTTGGATGGG
TGATCCAGTTAGAGCTCTCGAATTAGAGGTTGTCATTGGTGAAATCAAAAAGAATCATCT
CCTCGATAATGTTGTCATCACTGGTAACTACCTCAAGGATGGTCTCTTTGATATTGCCGC
TCGTTATCCAGGTTTAATTCAAAATATTAGAGGTGAAGGTACTTTCTTGGCTATTGATTT
CCCAACACCAGCTGAACGTGATCGTGTCATCTCTCACATTCGTTTATTAGGTGTTGAAAT
GGGTGGTTGTGGTGAAAGATCAATTCGTTTCCGTCCAATGTTAGTTTGTCAACCATCTCA
CATTAATCAATTCCTTAATCGTTTCGATCAAACAA
sequence update 2009. 4. 3
Translated Amino Acid sequence
NFIIFPLKQTMSSSRLIKCLSSNNYIVRSFSKSSIPTTPTPDFPGEYKEPIVKTQIPGPQ
SKALIERLNKLQDPRAAHFFADYANSRGNYISDVDGNILLDLYCQIASIPIGYNNPELIK
AAKSDRWVSAIINRPSLGVLPPKDWPALIENSFMQVSPKGLNQVFTAMCGSCANECAYKA
VFMHYQHVKR---

---LAEHAKENREIEDRCLQEVEQLIKTWHIPVAGIIVEPIQAEGGDNYATPYFFQGLRD
ITKKHGVSMIVDEVQTGMGATGKFWAHEHWNLTSPPDIVTFSKKMQAAGFYHNLDYRPSE
SYRNFNTWMGDPVRALELEVVIGEIKKNHLLDNVVITGNYLKDGLFDIAARYPGLIQNIR
GEGTFLAIDFPTPAERDRVISHIRLLGVEMGGCGERSIRFRPMLVCQPSHINQFLNRFDQ
T


Translated Amino Acid sequence (All Frames)
Frame A:
NFIIFPLKQTMSSSRLIKCLSSNNYIVRSFSKSSIPTTPTPDFPGEYKEPIVKTQIPGPQ
SKALIERLNKLQDPRAAHFFADYANSRGNYISDVDGNILLDLYCQIASIPIGYNNPELIK
AAKSDRWVSAIINRPSLGVLPPKDWPALIENSFMQVSPKGLNQVFTAMCGSCANECAYKA
VFMHYQHVKR---

---LAEHAKENREIEDRCLQEVEQLIKTWHIPVAGIIVEPIQAEGGDNYATPYFFQGLRD
ITKKHGVSMIVDEVQTGMGATGKFWAHEHWNLTSPPDIVTFSKKMQAAGFYHNLDYRPSE
SYRNFNTWMGDPVRALELEVVIGEIKKNHLLDNVVITGNYLKDGLFDIAARYPGLIQNIR
GEGTFLAIDFPTPAERDRVISHIRLLGVEMGGCGERSIRFRPMLVCQPSHINQFLNRFDQ
T

Frame B:
issfsh*nkqclhqd*lnv*vqtiilldlsqnhqfqphqhqifqvniknql*rhksqvhn
lkl*lkd*inskiqellisllimqiqeviifqmlmvify*iyivklhqfqlviiiqn*lk
qqnlidgyqqllivhhwvyfhqrigqh*lrihlckyhqkv*ikysqqcvdhvqmnvptkq
fsciinmln---

---wlnmlkriekskidvykrlnnslkhgisqslvsslnqfklkvvitmplltsska*ei
sprnmvsl*ssmkfklvwvplvnsgltnigisplhqilspsqrrckplvsiiiwitvhpn
pivtltlgwviqlelsn*rlslvkskriissimlsslvttsrmvslilplviqv*fkile
vkvlswllisqhqlnvivssltfvy*vlkwvvvvkdqfvsvqc*fvnhltlinslivsik
q

Frame C:
fhhfpiktnnvfikin*mfkfkqlyc*iflkiinsnhtntrfsr*i*rtnckdtnprsti
*sfn*kik*tprskscsflc*lckfkr*lyfrc*w*yfirfilsncinsnwl**srin*s
ski**mgisny*ssiigctstkglasin*efiyasitkrfessihsnvwimck*mclqss
fhalstc*t---

---g*tc*re*rnrr*mftrg*tth*nmaypsrwyhr*tnss*rw**lchslllprlkry
hqetwclydrr*ssnwygchw*ilgsrtleshlstrychllkedasrwfls*fglpsiri
ls*l*hldg*ss*ssrirgchw*nqkesspr*cchhw*lpqgwsl*ycrslsrfnsky*r
*ryflgy*fpnts*t*schlshsfirc*ngwlw*kinsfpsnvslstish*sip*sfrsn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM473 (AFM473Q) /CSM/AF/AFM4-D/AFM473Q.Seq.d/ 2508 0.0
CFI886 (CFI886Q) /CSM/CF/CFI8-D/CFI886Q.Seq.d/ 1403 0.0
VFL182 (VFL182Q) /CSM/VF/VFL1-D/VFL182Q.Seq.d/ 1400 0.0
AFN293 (AFN293Q) /CSM/AF/AFN2-D/AFN293Q.Seq.d/ 1400 0.0
AFO851 (AFO851Q) /CSM/AF/AFO8-C/AFO851Q.Seq.d/ 1396 0.0
VFI838 (VFI838Q) /CSM/VF/VFI8-B/VFI838Q.Seq.d/ 1384 0.0
VFH721 (VFH721Q) /CSM/VF/VFH7-A/VFH721Q.Seq.d/ 1342 0.0
VFB233 (VFB233Q) /CSM/VF/VFB2-B/VFB233Q.Seq.d/ 1330 0.0
CFI372 (CFI372Q) /CSM/CF/CFI3-C/CFI372Q.Seq.d/ 1300 0.0
VFA572 (VFA572Q) /CSM/VF/VFA5-C/VFA572Q.Seq.d/ 1289 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ346981) Dictyostelium discoideum cDNA clone:dda25b20, 3' ... 1417 0.0 1
(BJ434054) Dictyostelium discoideum cDNA clone:ddv23c21, 3' ... 1400 0.0 1
(BJ375491) Dictyostelium discoideum cDNA clone:ddc18l22, 3' ... 1400 0.0 1
(BJ347690) Dictyostelium discoideum cDNA clone:dda27i24, 3' ... 1400 0.0 1
(BJ432337) Dictyostelium discoideum cDNA clone:ddv18l10, 3' ... 1354 0.0 2
(BJ346317) Dictyostelium discoideum cDNA clone:dda30f14, 3' ... 1354 0.0 2
(BJ375177) Dictyostelium discoideum cDNA clone:ddc17p17, 3' ... 1300 0.0 1
(BJ434182) Dictyostelium discoideum cDNA clone:ddv16j05, 3' ... 1294 0.0 2
(BJ429361) Dictyostelium discoideum cDNA clone:ddv3a10, 3' e... 1255 0.0 3
(BJ429208) Dictyostelium discoideum cDNA clone:ddv2o17, 3' e... 1253 0.0 2
dna update 2009. 4.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270386_4(AM270386|pid:none) Aspergillus niger contig An17c0040... 270 1e-70
S68116(S68116) 4-aminobutyrate transaminase homolog - smut fungu... 264 4e-69
(P80147) RecName: Full=4-aminobutyrate aminotransferase, mitocho... 258 2e-67
BT044845_1(BT044845|pid:none) Salmo salar clone ssal-rgf-505-165... 258 3e-67
BC061933_1(BC061933|pid:none) Xenopus laevis hypothetical protei... 258 4e-67
BT045250_1(BT045250|pid:none) Salmo salar clone ssal-rgf-516-187... 258 4e-67
BC074179_1(BC074179|pid:none) Xenopus laevis hypothetical protei... 258 4e-67
AF271266_1(AF271266|pid:none) Cladosporium fulvum gamma-aminobut... 256 2e-66
M84802_1(M84802|pid:none) Sus scrofa 4-aminobutyrate aminotransf... 256 2e-66
CU633900_632(CU633900|pid:none) Podospora anserina genomic DNA c... 256 2e-66
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM473 is

5' end seq. ID AFM473F
5' end seq.
>AFM473F.Seq
AATTTCATCATTTTCCCATTAAAACAAACAATGTCTTCATCAAGATTAATTAAATGTTTA
AGTTCAAACAATTATATTGTTAGATCTTTCTCAAAATCATCAATTCCAACCACACCAACA
CCAGATTTTCCAGGTGAATATAAAGAACCAATTGTAAAGACACAAATCCCAGGTCCACAA
TCTAAAGCTTTAATTGAAAGATTAAATAAACTCCAAGATCCAAGAGCTGCTCATTTCTTT
GCTGATTATGCAAATTCAAGAGGTAATTATATTTCAGATGTTGATGGTAATATTTTATTA
GATTTATATTGTCAAATTGCATCAATTCCAATTGGTTATAATAATCCAGAATTAATTAAA
GCAGCAAAATCTGATAGATGGGTATCAGCAATTATTAATCGTCCATCATTGGGTGTACTT
CCACCAAAGGATTGGCCAGCATTAATTGAGAATTCATTTATGCAAGTATCACCAAAAGGT
TTGAATCAAGTATTCACAGCAATGTGTGGATCATGTGCAAATGAATGTGCCTACAAAGCA
GTTTTCATGCATTATCAACATGTTAAACGTXXXXXXXXXX
Length of 5' end seq. 580
3' end seq. ID AFM473Z
3' end seq.
>AFM473Z.Seq
XXXXXXXXXXTTGGCTGAACATGCTAAAGAGAATAGAGAAATCGAAGATAGATGTTTACA
AGAGGTTGAACAACTCATTAAAACATGGCATATCCCAGTCGCTGGTATCATCGTTGAACC
AATTCAAGCTGAAGGTGGTGATAACTATGCCACTCCTTACTTCTTCCAAGGCTTAAGAGA
TATCACCAAGAAACATGGTGTCTCTATGATCGTCGATGAAGTTCAAACTGGTATGGGTGC
CACTGGTAAATTCTGGGCTCACGAACATTGGAATCTCACCTCTCCACCAGATATTGTCAC
CTTCTCAAAGAAGATGCAAGCCGCTGGTTTCTATCATAATTTGGATTACCGTCCATCCGA
ATCCTATCGTAACTTTAACACTTGGATGGGTGATCCAGTTAGAGCTCTCGAATTAGAGGT
TGTCATTGGTGAAATCAAAAAGAATCATCTCCTCGATAATGTTGTCATCACTGGTAACTA
CCTCAAGGATGGTCTCTTTGATATTGCCGCTCGTTATCCAGGTTTAATTCAAAATATTAG
AGGTGAAGGTACTTTCTTGGCTATTGATTTCCCAACACCAGCTGAACGTGATCGTGTCAT
CTCTCACATTCGTTTATTAGGTGTTGAAATGGGTGGTTGTGGTGAAAGATCAATTCGTTT
CCGTCCAATGTTAGTTTGTCAACCATCTCACATTAATCAATTCCTTAATCGTTTCGATCA
AACAA
Length of 3' end seq. 725
Connected seq. ID AFM473P
Connected seq.
>AFM473P.Seq
AATTTCATCATTTTCCCATTAAAACAAACAATGTCTTCATCAAGATTAATTAAATGTTTA
AGTTCAAACAATTATATTGTTAGATCTTTCTCAAAATCATCAATTCCAACCACACCAACA
CCAGATTTTCCAGGTGAATATAAAGAACCAATTGTAAAGACACAAATCCCAGGTCCACAA
TCTAAAGCTTTAATTGAAAGATTAAATAAACTCCAAGATCCAAGAGCTGCTCATTTCTTT
GCTGATTATGCAAATTCAAGAGGTAATTATATTTCAGATGTTGATGGTAATATTTTATTA
GATTTATATTGTCAAATTGCATCAATTCCAATTGGTTATAATAATCCAGAATTAATTAAA
GCAGCAAAATCTGATAGATGGGTATCAGCAATTATTAATCGTCCATCATTGGGTGTACTT
CCACCAAAGGATTGGCCAGCATTAATTGAGAATTCATTTATGCAAGTATCACCAAAAGGT
TTGAATCAAGTATTCACAGCAATGTGTGGATCATGTGCAAATGAATGTGCCTACAAAGCA
GTTTTCATGCATTATCAACATGTTAAACGT----------TTGGCTGAACATGCTAAAGA
GAATAGAGAAATCGAAGATAGATGTTTACAAGAGGTTGAACAACTCATTAAAACATGGCA
TATCCCAGTCGCTGGTATCATCGTTGAACCAATTCAAGCTGAAGGTGGTGATAACTATGC
CACTCCTTACTTCTTCCAAGGCTTAAGAGATATCACCAAGAAACATGGTGTCTCTATGAT
CGTCGATGAAGTTCAAACTGGTATGGGTGCCACTGGTAAATTCTGGGCTCACGAACATTG
GAATCTCACCTCTCCACCAGATATTGTCACCTTCTCAAAGAAGATGCAAGCCGCTGGTTT
CTATCATAATTTGGATTACCGTCCATCCGAATCCTATCGTAACTTTAACACTTGGATGGG
TGATCCAGTTAGAGCTCTCGAATTAGAGGTTGTCATTGGTGAAATCAAAAAGAATCATCT
CCTCGATAATGTTGTCATCACTGGTAACTACCTCAAGGATGGTCTCTTTGATATTGCCGC
TCGTTATCCAGGTTTAATTCAAAATATTAGAGGTGAAGGTACTTTCTTGGCTATTGATTT
CCCAACACCAGCTGAACGTGATCGTGTCATCTCTCACATTCGTTTATTAGGTGTTGAAAT
GGGTGGTTGTGGTGAAAGATCAATTCGTTTCCGTCCAATGTTAGTTTGTCAACCATCTCA
CATTAATCAATTCCTTAATCGTTTCGATCAAACAA
Length of connected seq. 1285
Full length Seq ID -
Full length Seq. -
Length of full length seq. -