VFF471
Library VF
(Link to library)
Clone ID VFF471
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID VFF471P
(Link to Original site)
Representative DNA sequence
>VFF471 (VFF471Q) /CSM/VF/VFF4-C/VFF471Q.Seq.d/
ATTGTTATAATCAACTTTAAAGAAAGAATAAACAACCATGGGTAAAGAGAAAACTCACAT
TAACATTGTCGTCATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAAT
CTACAAATGTGGTGGTATCGATAAGAGAGTTATCGAAAAGTATGAAAAGGAAGCTTCTGA
AATGGGTAAACAATCCTTCAAATACGCCTGGGTTATGGATAAATTAAAGGCTGAACGTGA
AAGAGGTATCACCATCGATATTGCTTTATGGAAATTCGAAACCTCCAAATACTACTTCAC
CATCATTGATGCCCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGTACCTCCCA
AGCCGATTGTGCCGTCTTAGTCATTGCCTCCCCAACTGGTGAATTCGAAGCTGGTATCGC
CAAAAACGGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAAT
GATCGTTGCTATCAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGA
CGAAATTGTCAAGGAAGTTTCATCTTTCATCAAAAAGATTGGTTACAATCCAXXXXXXXX
XXCGTCGAACCAAAACGTCCACACGATAAACCATTACGTATTCCATTACAAGATGTCTAC
AAGATCGGTGGTATCGGTACTGTTCCAGTAGGTCGTGTCGAAACTGGTATCATTAAACCA
GGTATGGTCGTCACCTTTGCCCCAGCTGGTCTCTCAACTGAAGTCAAATCAGTCGAAATG
CATCACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAAC
GTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCA
CAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCAT
GCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAA
ATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCC
GTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGT
GTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAA
ACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGAT
AAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTAAATAAATA
GCATTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
ll*stlkke*TTMGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASE
MGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQ
ADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYD
EIVKEVSSFIKKIGYNP---

---VEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSV
EMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQ
IHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRP
MCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innisk
*iaf


Translated Amino Acid sequence (All Frames)
Frame A:
iviinfkerinnhg*rensh*hcrhwsrrcw*inhhwsfnlqmwwyr*esyrkv*kgsf*
ng*tilqirlgyg*ikg*t*kryhhrycfmeirnlqillhhh*cprsqrfhqeydywylp
srlcrlshclpnw*irswyrqkrsns*trspclhfrcqtndrcyqqdg*kinqlltsplr
rncqgsfifhqkdwlqs---

---rrtktstr*titysitrclqdrwyrycssrscrnwyh*trygrhlcpswsln*sqis
rnasrttprspsr*qcrfqr*krfsqrn*krygrw*lqkrsttrn*kircssyrpqpsrs
npcwlltslrlshcshcl*ih*nrr*s*ssywcrrcqrrycrrrlkew*crygrinpiss
nvc*ilh*iptirsfrrqryetnrrrrchqinrqespr*sr**ercccpikkeink*yf*
insi

Frame B:
ll*stlkke*TTMGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASE
MGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQ
ADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYD
EIVKEVSSFIKKIGYNP---

---VEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSV
EMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQ
IHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRP
MCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK*innisk
*iaf

Frame C:
cynql*rknkqpwvkrkltltlsslvt*mlvnqpplvi*stnvvvsirelsksmkrkllk
wvnnpsntpglwin*rlnvkevspsillygnskppnttspslmpqvteissri*llvppk
pivps*slppqlvnsklvspktvklvntlslltl*vsnk*sllstrwmknqptthkpvtt
klsrkfhlsskrlvti---

---snqnvhtinhyvfhykmstrsvvsvlfq*vvsklvslnqvwssplpqlvsqlksnqs
kcitnnsqkpvqvtm*vstlktfqskklkevwslvtpktihhkklknsllklssstiqvk
smlvthqs*ivtlltlpvnslkssiklivvlvpslpkkvlppss*rmvmplwsn*phlvq
cvlnpslnthh*vvspsei*dkpspsvssnqpsrkpqvkpvirkvllphqkrnk*iifln
k*h

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/ 1350 0.0
VFN376 (VFN376Q) /CSM/VF/VFN3-D/VFN376Q.Seq.d/ 1350 0.0
VFN329 (VFN329Q) /CSM/VF/VFN3-B/VFN329Q.Seq.d/ 1350 0.0
VFN318 (VFN318Q) /CSM/VF/VFN3-A/VFN318Q.Seq.d/ 1350 0.0
VFN174 (VFN174Q) /CSM/VF/VFN1-D/VFN174Q.Seq.d/ 1350 0.0
VFM841 (VFM841Q) /CSM/VF/VFM8-B/VFM841Q.Seq.d/ 1350 0.0
VFM534 (VFM534Q) /CSM/VF/VFM5-B/VFM534Q.Seq.d/ 1350 0.0
VFL433 (VFL433Q) /CSM/VF/VFL4-B/VFL433Q.Seq.d/ 1350 0.0
VFJ436 (VFJ436Q) /CSM/VF/VFJ4-B/VFJ436Q.Seq.d/ 1350 0.0
VFJ321 (VFJ321Q) /CSM/VF/VFJ3-A/VFJ321Q.Seq.d/ 1350 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X55973|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha. 1350 0.0 2
X55972|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha. 1294 0.0 2
AF016242|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds. 1122 0.0 3
M29935|M29935.1 C.albicans elongation factor 1-alpha (TEF-2) gene, complete cds. 264 0.0 8
M29934|M29934.1 C.albicans elongation factor 1-alpha (TEF-1) gene, complete cds. 192 0.0 9
AX109715|AX109715.1 Sequence 448 from Patent WO0123604. 147 e-161 9
AX109714|AX109714.1 Sequence 447 from Patent WO0123604. 147 e-161 9
AF402092|AF402092.1 Pichia anomala strain NRRL Y-366 translation elongation factor 1-alpha gene, partial cds. 151 e-161 9
AF157274|AF157274.1 Phascolomyces articulosus translation elongation factor 1-alpha (EF-1alpha) gene, partial cds. 105 e-151 12
AX109679|AX109679.1 Sequence 412 from Patent WO0123604. 161 e-150 8
dna update 2003. 9.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 424 0.0
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 424 0.0
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 424 0.0
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo... 339 e-177
AY445082_1(AY445082|pid:none) Metarhizium anisopliae strain E6 t... 331 e-176
(Q01765) RecName: Full=Elongation factor 1-alpha; Short... 329 e-176
(Q00251) RecName: Full=Elongation factor 1-alpha; Short... 332 e-175
(P34825) RecName: Full=Elongation factor 1-alpha; Short... 331 e-175
(P41745) RecName: Full=Elongation factor 1-alpha; Short... 334 e-175
EU152294_1(EU152294|pid:none) Dictyocaulus viviparus elongation ... 327 e-175
protein update 2009. 6.19
PSORT

psg: 0.84 gvh: 0.34 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VFF471 is cyt

5' end seq. ID VFF471F
5' end seq.
>VFF471F.Seq
ATTGTTATAATCAACTTTAAAGAAAGAATAAACAACCATGGGTAAAGAGAAAACTCACAT
TAACATTGTCGTCATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAAT
CTACAAATGTGGTGGTATCGATAAGAGAGTTATCGAAAAGTATGAAAAGGAAGCTTCTGA
AATGGGTAAACAATCCTTCAAATACGCCTGGGTTATGGATAAATTAAAGGCTGAACGTGA
AAGAGGTATCACCATCGATATTGCTTTATGGAAATTCGAAACCTCCAAATACTACTTCAC
CATCATTGATGCCCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGTACCTCCCA
AGCCGATTGTGCCGTCTTAGTCATTGCCTCCCCAACTGGTGAATTCGAAGCTGGTATCGC
CAAAAACGGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAAT
GATCGTTGCTATCAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGA
CGAAATTGTCAAGGAAGTTTCATCTTTCATCAAAAAGATTGGTTACAATCCA--------
--
Length of 5' end seq. 592
3' end seq. ID VFF471Z
3' end seq.
>VFF471Z.Seq
----------CGTCGAACCAAAACGTCCACACGATAAACCATTACGTATTCCATTACAAG
ATGTCTACAAGATCGGTGGTATCGGTACTGTTCCAGTAGGTCGTGTCGAAACTGGTATCA
TTAAACCAGGTATGGTCGTCACCTTTGCCCCAGCTGGTCTCTCAACTGAAGTCAAATCAG
TCGAAATGCATCACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACG
TTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACG
ATCCACCACAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTC
AAATCCATGCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAAT
TCACTGAAATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTA
CTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTC
CAATGTGTGTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATA
TGAGACAAACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAG
CCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTA
AATAAATAGCATTT
Length of 3' end seq. 724
Connected seq. ID VFF471P
Connected seq.
>VFF471P.Seq
ATTGTTATAATCAACTTTAAAGAAAGAATAAACAACCATGGGTAAAGAGAAAACTCACAT
TAACATTGTCGTCATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAAT
CTACAAATGTGGTGGTATCGATAAGAGAGTTATCGAAAAGTATGAAAAGGAAGCTTCTGA
AATGGGTAAACAATCCTTCAAATACGCCTGGGTTATGGATAAATTAAAGGCTGAACGTGA
AAGAGGTATCACCATCGATATTGCTTTATGGAAATTCGAAACCTCCAAATACTACTTCAC
CATCATTGATGCCCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGTACCTCCCA
AGCCGATTGTGCCGTCTTAGTCATTGCCTCCCCAACTGGTGAATTCGAAGCTGGTATCGC
CAAAAACGGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAAT
GATCGTTGCTATCAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGA
CGAAATTGTCAAGGAAGTTTCATCTTTCATCAAAAAGATTGGTTACAATCCA--------
--CGTCGAACCAAAACGTCCACACGATAAACCATTACGTATTCCATTACAAGATGTCTAC
AAGATCGGTGGTATCGGTACTGTTCCAGTAGGTCGTGTCGAAACTGGTATCATTAAACCA
GGTATGGTCGTCACCTTTGCCCCAGCTGGTCTCTCAACTGAAGTCAAATCAGTCGAAATG
CATCACGAACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAAC
GTTTCAGTCAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCA
CAAGAAACTGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCAT
GCTGGTTACTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAA
ATCGTCGATAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCC
GTCGTCTTAAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGT
GTTGAATCCTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAA
ACCGTCGCCGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGAT
AAGAAAGGTGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTAAATAAATA
GCATTT
Length of connected seq. 1316
Full length Seq ID -
Full length Seq. -
Length of full length seq. -