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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM471
Library AF
(Link to library)
Clone ID AFM471
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM471P
(Link to Original site)
Representative DNA sequence 
>AFM471 (AFM471Q) /CSM/AF/AFM4-C/AFM471Q.Seq.d/
ATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTATTTTA
ATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACTTCAA
TCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTTACAA
GACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGGAAAT
TTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACAAATT
TTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGAACTTTTGGGGGATTATGTCACGA
TGATACACCAATGGTTAAGAGAGCTGCTGCAACTAATTTAGGTAGTTTTGCAAAACAAAT
TGAAAAAGAATCAGTTAAATCAGAAATCCTTCCACTCTTTCAATCATTATCAACTGATGA
ACAAGATTCAGTTCGTTTATTAGGTGTTGAAAATTGTGCTTTATTAGXXXXXXXXXXTAT
GGTAAANAAGATACATTAACTCATCTTTTAGAATTGTTTTTACATCTCTTAAAAGATGAT
TTCCCAGATGTTCGTTTAAATATCATTTCAAAATTAGATCAAGTAAGTAAAGTAATTGGT
ATTGAAATGTTATCACAATCTCTATTACCAGCTATCGTTGAATTGGCTGAAGACCATCAA
TGGAGAGTAAGATTAGCAATTATTGATTATATTCCACTTTTAGCTTCACAATTAGGTGTT
GAATTCTTTGATGAAAAACTTGGTAATTTATGTATGACTTGGTTAGGTGATCCAGTATTT
TCAATTCGTGAAGCAGCAACTAATAATTTGAAGAAATTAACCGAAGTATTTGGAGTTGAT
TGGGCAAAGAATAATATTATTCCAAAAGTTTTATCTTTACACTCTCATCCAAACTATCTC
TATCGTATGACCACATTATTTTCAATTTCAACCCTTTCAACTGTTGTTGGAGGTGATGTT
ATCTCTAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTTCCGATAAAGTTCCAAATATT
AGATTTAATGTAGCTAAAACTTTCCAAACCATTATTCCATTACTCGATAGCACAATTGTA
CAATCAAGAGTCAAACCATTACTCGTAAAACTTCATGAAGATACTNTATAAAGNATGTTA
AATTACTATGCTAGCCAAGCA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
ykkwhl*iqnrmiiiqllf*lmn*kmriynldliq*knfnqlqkh*dqnvpvqn*shiyk
tlfskmkmkf*lyyqkn*ei*ssllvvqnmlfvyyhhykf*qvlrn*LLEKRTFGGLCHD
DTPMVKRAAATNLGSFAKQIEKESVKSEILPLFQSLSTDEQDSVRLLGVENCALL---

---YGKXDTLTHLLELFLHLLKDDFPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELA
EDHQWRVRLAIIDYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEV
FGVDWAKNNIIPKVLSLHSHPNYLYRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDK
VPNIRFNVAKTFQTIIPLLDSTIVQSRVKPLLVKLHEDTX*xmlnyyasqa
Translated Amino Acid sequence (All Frames) 
Frame A:
i*kmasintesddyhpivilidelknediqlrlnsikklqsiakalgpertrtelipylq
dsvlededevlvvlseelgnliefvggaehavcllpplqilagaeelvvreknfwgimsr
*ytng*esccn*fr*fcktn*kris*irnpstlsiiin**trfssfirc*klcfi---

---YGKXDTLTHLLELFLHLLKDDFPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELA
EDHQWRVRLAIIDYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEV
FGVDWAKNNIIPKVLSLHSHPNYLYRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDK
VPNIRFNVAKTFQTIIPLLDSTIVQSRVKPLLVKLHEDTX*xmlnyyasqa

Frame B:
ykkwhl*iqnrmiiiqllf*lmn*kmriynldliq*knfnqlqkh*dqnvpvqn*shiyk
tlfskmkmkf*lyyqkn*ei*ssllvvqnmlfvyyhhykf*qvlrn*LLEKRTFGGLCHD
DTPMVKRAAATNLGSFAKQIEKESVKSEILPLFQSLSTDEQDSVRLLGVENCALL---

---mvxkih*lif*ncfyis*kmisqmfv*isfqn*ik*vk*lvlkcyhnlyyqlslnwl
ktinge*d*qlliifhf*lhn*vlnslmknlviyv*lg*viqyfqfvkqqlii*rn*pky
leligqriilfqkfylytliqtisiv*phyfqfqpfqlllevmlslvqwflywpkwfpik
fqildlm*lklskplfhysiaqlynqesnhys*nfmkilykxc*itmlak

Frame C:
ikngiykyrig*lssncyfn**ikk*gytt*t*fnkktsincksirtrtypyrinpiftr
lcsrr*r*sfsciirrirkfnrvcwwcrtcclfittitnfsrc*gisc*rkellgdyvtm
ihqwlrellqli*vvlqnklkknqlnqksfhsfnhyqlmnkiqfvy*vlkivly*---

---w*xryinssfrivftslkr*fprcsfkyhfkirssk*snwy*nvitisitsyr*ig*
rpsmeskisny*lystfsftirc*il**ktw*fmydlvr*ssifns*ssn**feeinrsi
ws*lgke*yysksfiftlssklslsydhiifnfnpfnccwr*cyl*fngsfigqngfr*s
sky*i*cs*nfpnhysitr*hnctiksqtitrkts*ryxikxvkllc*ps
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM471 (AFM471Q) /CSM/AF/AFM4-C/AFM471Q.Seq.d/                       2302   0.0
AFL515 (AFL515Q) /CSM/AF/AFL5-A/AFL515Q.Seq.d/                       1294   0.0
SFF891 (SFF891Q) /CSM/SF/SFF8-D/SFF891Q.Seq.d/                       1283   0.0
SFF850 (SFF850Q) /CSM/SF/SFF8-C/SFF850Q.Seq.d/                       1283   0.0
AFL883 (AFL883Q) /CSM/AF/AFL8-D/AFL883Q.Seq.d/                       1277   0.0
AFK893 (AFK893Q) /CSM/AF/AFK8-D/AFK893Q.Seq.d/                       1273   0.0
SFJ287 (SFJ287Q) /CSM/SF/SFJ2-D/SFJ287Q.Seq.d/                       1269   0.0
SFJ265 (SFJ265Q) /CSM/SF/SFJ2-C/SFJ265Q.Seq.d/                       1269   0.0
CFC574 (CFC574Q) /CSM/CF/CFC5-D/CFC574Q.Seq.d/                       1269   0.0
SFD371 (SFD371Q) /CSM/SF/SFD3-C/SFD371Q.Seq.d/                       1267   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346964) Dictyostelium discoideum cDNA clone:dda25n18, 3' ...  1338   0.0    1
(BJ346510) Dictyostelium discoideum cDNA clone:dda24m03, 3' ...  1294   0.0    1
(BJ401817) Dictyostelium discoideum cDNA clone:dds19a18, 3' ...  1269   0.0    1
(BJ398533) Dictyostelium discoideum cDNA clone:dds12f24, 3' ...  1269   0.0    2
(BJ398462) Dictyostelium discoideum cDNA clone:dds12d14, 3' ...  1269   0.0    2
(BJ346720) Dictyostelium discoideum cDNA clone:dda24f22, 3' ...  1265   0.0    1
(BJ345617) Dictyostelium discoideum cDNA clone:dda28b12, 3' ...  1263   0.0    1
(BJ401948) Dictyostelium discoideum cDNA clone:dds19m22, 3' ...  1261   0.0    1
(BJ432493) Dictyostelium discoideum cDNA clone:ddv18i20, 3' ...  1259   0.0    1
(BJ374155) Dictyostelium discoideum cDNA clone:ddc6c19, 3' e...  1259   0.0    1
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei...   392   e-107
(Q9UT08) RecName: Full=Protein phosphatase PP2A regulatory subun...   264   8e-74
AM920433_216(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   271   3e-73
AJ131045_1(AJ131045|pid:none) Cicer arietinum mRNA for protein p...   265   8e-72
AM270402_10(AM270402|pid:none) Aspergillus niger contig An18c010...   265   1e-71
AJ243828_1(AJ243828|pid:none) Oryza sativa mRNA for protein phos...   263   1e-71
EU965946_1(EU965946|pid:none) Zea mays clone 290216 serine/threo...   263   3e-71
AF196287_1(AF196287|pid:none) Medicago sativa subsp. x varia Ser...   262   6e-71
BT055991_1(BT055991|pid:none) Zea mays full-length cDNA clone ZM...   260   4e-70
T03684(T03684) phosphoprotein phosphatase (EC 3.1.3.16) 2A regul...   259   5e-70
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM471 is

5' end seq. ID AFM471F
5' end seq. 
>AFM471F.Seq
ATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTATTTTA
ATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACTTCAA
TCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTTACAA
GACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGGAAAT
TTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACAAATT
TTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGAACTTTTGGGGGATTATGTCACGA
TGATACACCAATGGTTAAGAGAGCTGCTGCAACTAATTTAGGTAGTTTTGCAAAACAAAT
TGAAAAAGAATCAGTTAAATCAGAAATCCTTCCACTCTTTCAATCATTATCAACTGATGA
ACAAGATTCAGTTCGTTTATTAGGTGTTGAAAATTGTGCTTTATTAGXXXXXXXXXX
Length of 5' end seq. 537
3' end seq. ID AFM471Z
3' end seq. 
>AFM471Z.Seq
XXXXXXXXXXTATGGTAAANAAGATACATTAACTCATCTTTTAGAATTGTTTTTACATCT
CTTAAAAGATGATTTCCCAGATGTTCGTTTAAATATCATTTCAAAATTAGATCAAGTAAG
TAAAGTAATTGGTATTGAAATGTTATCACAATCTCTATTACCAGCTATCGTTGAATTGGC
TGAAGACCATCAATGGAGAGTAAGATTAGCAATTATTGATTATATTCCACTTTTAGCTTC
ACAATTAGGTGTTGAATTCTTTGATGAAAAACTTGGTAATTTATGTATGACTTGGTTAGG
TGATCCAGTATTTTCAATTCGTGAAGCAGCAACTAATAATTTGAAGAAATTAACCGAAGT
ATTTGGAGTTGATTGGGCAAAGAATAATATTATTCCAAAAGTTTTATCTTTACACTCTCA
TCCAAACTATCTCTATCGTATGACCACATTATTTTCAATTTCAACCCTTTCAACTGTTGT
TGGAGGTGATGTTATCTCTAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTTCCGATAA
AGTTCCAAATATTAGATTTAATGTAGCTAAAACTTTCCAAACCATTATTCCATTACTCGA
TAGCACAATTGTACAATCAAGAGTCAAACCATTACTCGTAAAACTTCATGAAGATACTNT
ATAAAGNATGTTAAATTACTATGCTAGCCAAGCA
Length of 3' end seq. 694
Connected seq. ID AFM471P
Connected seq. 
>AFM471P.Seq
ATATAAAAAATGGCATCTATAAATACAGAATCGGATGATTATCATCCAATTGTTATTTTA
ATTGATGAATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACTTCAA
TCAATTGCAAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTTACAA
GACTCTGTTCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGGAAAT
TTAATCGAGTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACAAATT
TTAGCAGGTGCTGAGGAATTAGTTGTTAGAGAAAAGAACTTTTGGGGGATTATGTCACGA
TGATACACCAATGGTTAAGAGAGCTGCTGCAACTAATTTAGGTAGTTTTGCAAAACAAAT
TGAAAAAGAATCAGTTAAATCAGAAATCCTTCCACTCTTTCAATCATTATCAACTGATGA
ACAAGATTCAGTTCGTTTATTAGGTGTTGAAAATTGTGCTTTATTAG----------TAT
GGTAAANAAGATACATTAACTCATCTTTTAGAATTGTTTTTACATCTCTTAAAAGATGAT
TTCCCAGATGTTCGTTTAAATATCATTTCAAAATTAGATCAAGTAAGTAAAGTAATTGGT
ATTGAAATGTTATCACAATCTCTATTACCAGCTATCGTTGAATTGGCTGAAGACCATCAA
TGGAGAGTAAGATTAGCAATTATTGATTATATTCCACTTTTAGCTTCACAATTAGGTGTT
GAATTCTTTGATGAAAAACTTGGTAATTTATGTATGACTTGGTTAGGTGATCCAGTATTT
TCAATTCGTGAAGCAGCAACTAATAATTTGAAGAAATTAACCGAAGTATTTGGAGTTGAT
TGGGCAAAGAATAATATTATTCCAAAAGTTTTATCTTTACACTCTCATCCAAACTATCTC
TATCGTATGACCACATTATTTTCAATTTCAACCCTTTCAACTGTTGTTGGAGGTGATGTT
ATCTCTAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTTCCGATAAAGTTCCAAATATT
AGATTTAATGTAGCTAAAACTTTCCAAACCATTATTCCATTACTCGATAGCACAATTGTA
CAATCAAGAGTCAAACCATTACTCGTAAAACTTCATGAAGATACTNTATAAAGNATGTTA
AATTACTATGCTAGCCAAGCA
Length of connected seq. 1211
Full length Seq ID -
Full length Seq. -
Length of full length seq. -