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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM469
Library AF
(Link to library)
Clone ID AFM469
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM469 (AFM469Q) /CSM/AF/AFM4-C/AFM469Q.Seq.d/
XXXXXXXXXXATNGTNTCGTTCTCTTTNCTAAATCCNTTAAACANATCATNCAAAAGAAG
GGCCTCTAATNNTTATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAA
CTTTGGNNTGACTCTCTCTTCAACTAC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---VSFSXLNPLNXSXKRRASNXYIVISILMDLVKESANFGXTLSST
Translated Amino Acid sequence (All Frames) 
Frame A:
---xxrslx*ix*txhxkegplxxilsslfswi**rnlqtlx*lslql


Frame B:
---xxvlfxksxkxixqkkgl*xlychlyshgfskgicklwxdslfny


Frame C:
---VSFSXLNPLNXSXKRRASNXYIVISILMDLVKESANFGXTLSST
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM469 (AFM469Q) /CSM/AF/AFM4-C/AFM469Q.Seq.d/                        212   1e-54
VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/                        165   2e-40
SSH396 (SSH396Q) /CSM/SS/SSH3-D/SSH396Q.Seq.d/                        165   2e-40
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                        165   2e-40
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                        165   2e-40
SLI758 (SLI758Q) /CSM/SL/SLI7-C/SLI758Q.Seq.d/                        165   2e-40
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/                        165   2e-40
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/                        165   2e-40
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                        165   2e-40
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/                        165   2e-40
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346942) Dictyostelium discoideum cDNA clone:dda25j18, 3' ...   212   2e-51  1
(AU038195) Dictyostelium discoideum slug cDNA, clone SSH396.      137   7e-39  2
(AU037315) Dictyostelium discoideum slug cDNA, clone SSB757.      121   3e-35  2
(AF222688) Dictyostelium discoideum dynacortin (dct) mRNA, c...   137   1e-28  1
(AU060182) Dictyostelium discoideum slug cDNA, clone SLA529.      137   1e-28  1
(AU053491) Dictyostelium discoideum slug cDNA, clone SLI758.      137   1e-28  1
(AU034407) Dictyostelium discoideum slug cDNA, clone SLC832.      137   1e-28  1
(C94037) Dictyostelium discoideum slug cDNA, clone SSG310.        137   1e-28  1
(C84047) Dictyostelium discoideum slug cDNA, clone SSC538.        137   1e-28  1
(C84045) Dictyostelium discoideum slug cDNA, clone SSC534.        137   1e-28  1
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...    47   2e-04
(Q96VA4) RecName: Full=1,4-alpha-glucan-branching enzyme;       ...    32   8.6
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM469 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM469Z
3' end seq. 
>AFM469Z.Seq
XXXXXXXXXXATNGTNTCGTTCTCTTTNCTAAATCCNTTAAACANATCATNCAAAAGAAG
GGCCTCTAATNNTTATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAA
CTTTGGNNTGACTCTCTCTTCAACTAC
Length of 3' end seq. 147
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -