VFF273
Library VF
(Link to library)
Clone ID VFF273
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12922-1
Original site URL
Representative seq. ID VFF273Z
(Link to Original site)
Representative DNA sequence
>VFF273 (VFF273Q) /CSM/VF/VFF2-D/VFF273Q.Seq.d/
XXXXXXXXXXGCTGACACTGTTGCTGATTTAGGTTTTGGTAATGAGCTTGGAAATTATGG
TNAATATTCCGGTGATCCAAATNAANAGGATACTCATAAATATGCATGCNCTTTAATTTC
ATTGGCAACCANAAATCCTGATTTTAGACCAANAGCATTATTAATTGGTGGTGGTATTGC
TAATTTTACTGATGTGGCTGCCNCTTTCAAAGGNATCATTANAGCAATTAAANAGNATCA
TGATGANATCATTNAATCAAATCTTTCCATTTTCGTTAAAAAAGGTGGNCCAAATTATCA
ATCGGGTTTACAACANATGANAGAAATTGGTCATNAATTACANATCCCNATCAAAGTTTT
CGGTCCTGAAGTTAANANGACAAGNANTGNTGCAATGGCAATCCAACANATTAANGNACC
TANTGTTAATCCNTTAAAACCNCAAACAAATAATTTTTCNC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---DTVADLGFGNELGNYGXYSGDPNXXDTHKYACXLISLATXNPDFRPXALLIGGGIAN
FTDVAAXFKGIIXAIKXXHDXIIXSNLSIFVKKGGPNYQSGLQXMXEIGHXLXIPIKVFG
PEVXXTXXXAMAIQXIXXPXVNPLKPQTNNFS


Translated Amino Acid sequence (All Frames)
Frame A:
---ltllli*vlvmsleimvnipviqxxrilinmhal*fhwqpxilildqxhy*lvvvll
illmwlplskxslxqlxximmxsxnqifpfslkkvxqiinrvynx*xklvxnyxsxskfs
vlklxxqxxxqwqsnxlxxlxlix*nxkqiifx


Frame B:
---*hcc*frfw**awklwxifr*skxxgys*icmxfnfignxks*f*txsiinwwwyc*
fy*cgcxfqrxhxsn*xxs**xhxiksfhfr*krwxklsigfttxxrnwsxitxpxqsfr
s*s*xdkxxcngnptx*xtxc*sxktxnk*ff


Frame C:
---DTVADLGFGNELGNYGXYSGDPNXXDTHKYACXLISLATXNPDFRPXALLIGGGIAN
FTDVAAXFKGIIXAIKXXHDXIIXSNLSIFVKKGGPNYQSGLQXMXEIGHXLXIPIKVFG
PEVXXTXXXAMAIQXIXXPXVNPLKPQTNNFS


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFF273 (VFF273Q) /CSM/VF/VFF2-D/VFF273Q.Seq.d/ 712 0.0
SFI350 (SFI350Q) /CSM/SF/SFI3-C/SFI350Q.Seq.d/ 694 0.0
CFI528 (CFI528Q) /CSM/CF/CFI5-B/CFI528Q.Seq.d/ 694 0.0
VSB813 (VSB813Q) /CSM/VS/VSB8-A/VSB813Q.Seq.d/ 688 0.0
VSB133 (VSB133Q) /CSM/VS/VSB1-B/VSB133Q.Seq.d/ 688 0.0
VFF648 (VFF648Q) /CSM/VF/VFF6-B/VFF648Q.Seq.d/ 688 0.0
VFF576 (VFF576Q) /CSM/VF/VFF5-D/VFF576Q.Seq.d/ 688 0.0
SSC786 (SSC786Q) /CSM/SS/SSC7-D/SSC786Q.Seq.d/ 688 0.0
SLC828 (SLC828Q) /CSM/SL/SLC8-B/SLC828Q.Seq.d/ 688 0.0
CFF880 (CFF880Q) /CSM/CF/CFF8-D/CFF880Q.Seq.d/ 688 0.0

own update 2001.11.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BM108865|BM108865.1 EST556401 potato roots Solanum tuberosum cDNA clone cPRO2F7 5' end, mRNA sequence. 46 0.001 2
BQ512190|BQ512190.1 EST619605 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHW74 5' end, mRNA sequence. 46 0.001 2
BQ512191|BQ512191.1 EST619606 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHW74 3' end, mRNA sequence. 46 0.001 2
BQ621863|BQ621863.1 fch1c.pk002.h4 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence. 40 0.004 2
BJ566377|BJ566377.1 Ipomoea nil cDNA clone:jm11b14, 3' end, single read. 52 0.006 1
BJ569621|BJ569621.1 Ipomoea nil cDNA clone:jm6c08, 3' end, single read. 52 0.006 1
BJ569236|BJ569236.1 Ipomoea nil cDNA clone:jm5a06, 3' end, single read. 52 0.006 1
BQ834445|BQ834445.1 AlEST0409 Arabidopsis lyrata Inflorescence pCMV-PCR Library Arabidopsis lyrata cDNA clone P3WA1-C10 3', mRNA sequence. 50 0.024 1
BU034059|BU034059.1 QHJ2P17.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHJ2P17, mRNA sequence. 50 0.024 1
BM356787|BM356787.2 13IV-D5 Triphysaria versicolor root-tip, early DMBQ-induced transcript cDNA library Triphysaria versicolor cDNA, mRNA sequence. 50 0.024 1
dna update 2003. 9.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT070808_1(BT070808|pid:none) Picea sitchensis clone WS02750_O19... 127 2e-28
AJ344108_1(AJ344108|pid:none) Lupinus albus mRNA for ATP citrate... 123 2e-27
AC003970_9(AC003970|pid:none) Arabidopsis thaliana chromosome I ... 122 3e-27
BT041953_1(BT041953|pid:none) Zea mays full-length cDNA clone ZM... 122 5e-27
AK062236_1(AK062236|pid:none) Oryza sativa Japonica Group cDNA c... 120 1e-26
AC132565_14(AC132565|pid:none) Medicago truncatula clone mth2-4a... 120 2e-26
AM468006_2(AM468006|pid:none) Vitis vinifera contig VV78X180138.... 119 3e-26
AC002292_32(AC002292|pid:none) Arabidopsis thaliana BAC F8A5, co... 119 4e-26
EU962919_1(EU962919|pid:none) Zea mays clone 246539 ATP-citrate ... 118 6e-26
AC009398_11(AC009398|pid:none) Genomic sequence for Arabidopsis ... 118 6e-26
protein update 2009. 6.19
PSORT

psg: 0.75 gvh: 0.52 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.13 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for VFF273 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFF273Z
3' end seq.
>VFF273Z.Seq
----------GCTGACACTGTTGCTGATTTAGGTTTTGGTAATGAGCTTGGAAATTATGG
TNAATATTCCGGTGATCCAAATNAANAGGATACTCATAAATATGCATGCNCTTTAATTTC
ATTGGCAACCANAAATCCTGATTTTAGACCAANAGCATTATTAATTGGTGGTGGTATTGC
TAATTTTACTGATGTGGCTGCCNCTTTCAAAGGNATCATTANAGCAATTAAANAGNATCA
TGATGANATCATTNAATCAAATCTTTCCATTTTCGTTAAAAAAGGTGGNCCAAATTATCA
ATCGGGTTTACAACANATGANAGAAATTGGTCATNAATTACANATCCCNATCAAAGTTTT
CGGTCCTGAAGTTAANANGACAAGNANTGNTGCAATGGCAATCCAACANATTAANGNACC
TANTGTTAATCCNTTAAAACCNCAAACAAATAATTTTTCNC
Length of 3' end seq. 451
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -