>VFF267 (VFF267Q) /CSM/VF/VFF2-C/VFF267Q.Seq.d/
ATTTTTAAAGTTTTACATATATATAAACAATCAATTTAAAAAATGATGAAATTTTTAATT
GTTTTAATTTTAGCATTATTCGCTTTATCAAGTGTTAATGCAAGCAGCGCTATTGAATGC
GAACTTTGTGAATATGCTGCCAATTATGGTGAATTGCTCATTCAATCAAATGCCACCGAA
ACTGAAATTATCGATAAAGTTGAAAACTTTTGCAAAGTTATCCCATCTAGTTTCCAAGCC
ACTTGTGATAGTTTAATCGCAAACTATGGTAAACAACTCATTCAAATGATTGTCAACAAA
GAATCACCAAGCACTTTATGCGCTCAAATTGATATGTGTGCATCATCAACTGAAGCCGTC
CAAGGTATTTTAGAATGTGACATTTGCCAATTCATCGTTAAACAAGTCAACAAATATATT
TCAGGTAACGCAACTGAAGCCCAAATCCTCAAATTCTTAGATACTGATTGTGAAGTCTTT
GGTAAAGGTGGTTCAGTAACTTGTCAAAACATTGTCAACAACTATGCCCCACAAATCATC
AATTTAATCATTAACAACGCATCACCATCCCAAGTCTGCGGTCTTGTCGGTTTATGTGGC
TXXXXXXXXXX

ifkvlhiykqsi*KMMKFLIVLILALFALSSVNASSAIECELCEYAANYGELLIQSNATE
TEIIDKVENFCKVIPSSFQATCDSLIANYGKQLIQMIVNKESPSTLCAQIDMCASSTEAV
QGILECDICQFIVKQVNKYISGNATEAQILKFLDTDCEVFGKGGSVTCQNIVNNYAPQII
NLIINNASPSQVCGLVGLCG---

Frame A:
ifkvlhiykqsi*KMMKFLIVLILALFALSSVNASSAIECELCEYAANYGELLIQSNATE
TEIIDKVENFCKVIPSSFQATCDSLIANYGKQLIQMIVNKESPSTLCAQIDMCASSTEAV
QGILECDICQFIVKQVNKYISGNATEAQILKFLDTDCEVFGKGGSVTCQNIVNNYAPQII
NLIINNASPSQVCGLVGLCG---


Frame B:
flkfyiyinnqfkk**nf*lf*f*hyslyqvlmqaallnanfvnmlpimvncsfnqmppk
lklsiklktfaklshlvskplviv*sqtmvnnsfk*lstknhqalyalklicvhhqlkps
kvf*nvtfansslnkstnifqvtqlkpkssns*ilivkslvkvvq*lvktlsttmphkss
i*sltthhhpksavlsvyv---


Frame C:
f*sftyi*tinlkndeifncfnfsiirfikc*ckqry*mrtl*iccqlw*iahsikchrn
*nyr*s*kllqsypi*fpshl**fnrklw*tthsndcqqritkhfmrsn*yvciin*srp
ryfrm*hlpihr*tsqqiyfr*rn*spnpqilry*l*slw*rwfsnlskhcqqlcptnhq
fnh*qritipslrscrfmw---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFL608 (VFL608Q) /CSM/VF/VFL6-A/VFL608Q.Seq.d/                       1191   0.0
VFL571 (VFL571Q) /CSM/VF/VFL5-C/VFL571Q.Seq.d/                       1191   0.0
VFF843 (VFF843Q) /CSM/VF/VFF8-B/VFF843Q.Seq.d/                       1191   0.0
VFF267 (VFF267Q) /CSM/VF/VFF2-C/VFF267Q.Seq.d/                       1191   0.0
VFF888 (VFF888Q) /CSM/VF/VFF8-D/VFF888Q.Seq.d/                       1179   0.0
VFF621 (VFF621Q) /CSM/VF/VFF6-A/VFF621Q.Seq.d/                       1164   0.0
VFG332 (VFG332Q) /CSM/VF/VFG3-B/VFG332Q.Seq.d/                       1148   0.0
VSD442 (VSD442Q) /CSM/VS/VSD4-B/VSD442Q.Seq.d/                       1134   0.0
FCL-AB23 (FCL-AB23Q) /CSM/FCL/FCL-AB/FCL-AB23Q.Seq.d/                1134   0.0
VSD810 (VSD810Q) /CSM/VS/VSD8-A/VSD810Q.Seq.d/                       1126   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AU206530|AU206530.1 Caenorhabditis elegans cDNA clone:yk877f01 : 5' end, single read.   230  2e-56  1
AF175768|AF175768.1 Dictyostelium discoideum SAPLIP C protein mRNA, complete cds.    84  2e-13  2
AE001438|AE001438.3 Clostridium acetobutylicum megaplasmid pSOL1, complete sequence.    50  0.008  2
AL158070|AL158070.11 Human DNA sequence from clone RP11-235C23 on chromosome 9q31.1-31.3. Contains a pseudogene similar to KIAA1272, KIAA0884 and rat Tulip 1  and 2, the FCMD gene for Fukuyama type congenital muscular dystrophy protein, the TAL2 gene for T-cell acute lymphocytic leukemia 2  protein, ESTs, STSs, GSSs and two CpG islands.    32  0.27  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34  0.41  8
BX511158|BX511158.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-28B4.    38  0.44  4
AI647659|AI647659.1 uk37e01.x1 Sugano mouse kidney mkia Mus musculus cDNA clone IMAGE:1971192 3', mRNA sequence.    46  0.51  1
AW292091|AW292091.1 UI-H-BI2-agx-a-11-0-UI.s1 NCI_CGAP_Sub4 Homo sapiens cDNA clone IMAGE:2725557 3', mRNA sequence.    46  0.51  1
BZ016954|BZ016954.1 oeh10e08.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46  0.51  1
AE000837|AE000837.1 Methanobacterium thermoautotrophicum from bases 481808 to 494891 (section 43 of 148) of the complete genome.    46  0.51  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210...   107   3e-22
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167...   107   3e-22
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147...   105   8e-22
U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m...   104   2e-21
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com...   102   6e-21
(O13035) RecName: Full=Proactivator polypeptide; Contains:   Rec...   102   6e-21
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ...   100   3e-20
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA...   100   3e-20
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu...   100   3e-20
AB209776_1(AB209776|pid:none) Homo sapiens mRNA for prosaposin v...    96   8e-19

 psg: 0.99  gvh: 0.88  alm: 0.43  top: 0.07  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for VFF267 is exc

>VFF267F.Seq
ATTTTTAAAGTTTTACATATATATAAACAATCAATTTAAAAAATGATGAAATTTTTAATT
GTTTTAATTTTAGCATTATTCGCTTTATCAAGTGTTAATGCAAGCAGCGCTATTGAATGC
GAACTTTGTGAATATGCTGCCAATTATGGTGAATTGCTCATTCAATCAAATGCCACCGAA
ACTGAAATTATCGATAAAGTTGAAAACTTTTGCAAAGTTATCCCATCTAGTTTCCAAGCC
ACTTGTGATAGTTTAATCGCAAACTATGGTAAACAACTCATTCAAATGATTGTCAACAAA
GAATCACCAAGCACTTTATGCGCTCAAATTGATATGTGTGCATCATCAACTGAAGCCGTC
CAAGGTATTTTAGAATGTGACATTTGCCAATTCATCGTTAAACAAGTCAACAAATATATT
TCAGGTAACGCAACTGAAGCCCAAATCCTCAAATTCTTAGATACTGATTGTGAAGTCTTT
GGTAAAGGTGGTTCAGTAACTTGTCAAAACATTGTCAACAACTATGCCCCACAAATCATC
AATTTAATCATTAACAACGCATCACCATCCCAAGTCTGCGGTCTTGTCGGTTTATGTGGC
T----------