AFM455
Library AF
(Link to library)
Clone ID AFM455
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM455P
(Link to Original site)
Representative DNA sequence
>AFM455 (AFM455Q) /CSM/AF/AFM4-C/AFM455Q.Seq.d/
TTTTATATAAATTTTTATAAAAACGTTTTTTAATTTAATTGTTGCGTTTAAACAATGAGG
TTAGGATCCATATCATCTCTATCTTGTGATCAACTGTGTAAATATTTACATTCATCACTT
GGTGATGAATATTCAAACATCATTAATAGTTTTAAAATAAATCAAGTCACTGGTGATGAT
TTTGTTTTATTTGAACAAAAAGATTATGAAACTTTATCAGTACCTTGGAAATTTCAAAAA
AAACTTAAAGAAATACAAGGTTCTGGTGTTGTAGATAATCCAGGCTCAACTCCAAACCCA
AGCCCAAACCCAAGTCCAAACCCAGTACCTGGCAATACTTCAAATGCACCAACATCAACA
GGTAGAGAATCACTTGAGACCCAAAGAGATATCATACAAATGAAAAGTAAAATTGATCTT
CTCAGTAATTCATTGTTACAACTAGTTGAGCAAATGAAAGTTACCAAACCACCTACAAAT
AACTTTTCAAATTTATCACCAGCAACACAAAATAAAATATTGAATCCATCACCTCAATCA
AAGAGAATCCCAATCATTGATCCAACATGTGXXXXXXXXXXTAAAATCATTGGTTAATGT
CAATCCACCTGAAAGCATTATACTTCCCAAAAAGTTTATGATTAAAACACCTCTTAGTGA
ACCTATAGATGGTACTATTGAATTGATGTATGGTGGTAGAAATATGTTTACTGGCAGTGT
TACACAAGGTGATGCTGATCTTCCTCTAAACCTCTTGGATGGTACATTTGAGGTTATCAT
TAAACCCAATAAGAGTAATTTATTACCTTTAAAGTTTAAAATGATTATACATGACTCTGT
AAGAACCACTTCAAGCCATCAAAATGTCGGTAGACCTAAAAAGCCTAAAGAAATGGATTT
CGTTTTAGCTTGGGGGGAATCACCACTGGATTTGGATTCTCATATGTGGTGTATTCATCC
TAATGGTTCTATTAGTCATGTTTATTTCGGGGGTAGGAGTGTAGATAAAATGTCCTTGGA
AGCTGATACTCAAAATGGTTTTGGTCCCGAAACCATAAGTATTATACGTTTAGATGGTTG
TAAATATGTTTATGCAGTTCATAATTTCTCAACTGAAGGAGAAATAGCTCAATCAGGTGC
CAAGCTTACAATTGCCCATGAAACCTCAACATTATTTGAAAGATGTATCCCAAACACTCG
ACAAACTGGTGCAAGATTTTGGGTAGTATGTACTATTGATGGAACATCTGGAGATATTGA
CTTCAAAGATCATTTTAATTCCACAATTCACAAACAGATATTCCATTAAAATATAAATAA
GTA
sequence update 2009. 4. 3
Translated Amino Acid sequence
fyinfyknvf*fnccv*TMRLGSISSLSCDQLCKYLHSSLGDEYSNIINSFKINQVTGDD
FVLFEQKDYETLSVPWKFQKKLKEIQGSGVVDNPGSTPNPSPNPSPNPVPGNTSNAPTST
GRESLETQRDIIQMKSKIDLLSNSLLQLVEQMKVTKPPTNNFSNLSPATQNKILNPSPQS
KRIPIIDPTC---

---KSLVNVNPPESIILPKKFMIKTPLSEPIDGTIELMYGGRNMFTGSVTQGDADLPLNL
LDGTFEVIIKPNKSNLLPLKFKMIIHDSVRTTSSHQNVGRPKKPKEMDFVLAWGESPLDL
DSHMWCIHPNGSISHVYFGGRSVDKMSLEADTQNGFGPETISIIRLDGCKYVYAVHNFST
EGEIAQSGAKLTIAHETSTLFERCIPNTRQTGARFWVVCTIDGTSGDIDFKDHFNSTIHK
QIFH*nink


Translated Amino Acid sequence (All Frames)
Frame A:
fyinfyknvf*fnccv*TMRLGSISSLSCDQLCKYLHSSLGDEYSNIINSFKINQVTGDD
FVLFEQKDYETLSVPWKFQKKLKEIQGSGVVDNPGSTPNPSPNPSPNPVPGNTSNAPTST
GRESLETQRDIIQMKSKIDLLSNSLLQLVEQMKVTKPPTNNFSNLSPATQNKILNPSPQS
KRIPIIDPTC---

---*nhwlmsihlkalyfpksl*lkhllvnl*mvlln*cmvveicllavlhkvmlifl*t
swmvhlrlslnpirviyyl*slk*lymtl*eplqaikmsvdlkslkkwisf*lggnhhwi
wilicgvfilmvllvmfisgvgv*ikcpwklilkmvlvpkp*vlyv*mvvnmfmqfiisq
lkek*lnqvpslqlpmkpqhylkdvsqtldklvqdfg*yvllmehleiltskiilipqft
nrysiki*is

Frame B:
fi*ifiktffnlivafkq*g*dpyhlylvincvniyihhlvmniqtslivlk*ikslvmi
lfylnkkimklyqylgnfkknlkkykvlvl*iiqaqlqtqaqtqvqtqylailqmhqhqq
venhlrpkeisyk*kvklifsvihcyn*lsk*klpnhlqitfqiyhqqhkiky*ihhlnq
resqsliqhv---

---kiig*cqst*khytsqkvyd*nts**tyrwyy*idvww*kyvywqcytr*c*ssskp
lgwyi*gyh*tq*e*fitfkv*ndyt*lcknhfkpskcr*t*ka*rngfrfslggittgf
gfsyvvyss*wfy*sclfrg*ecr*nvlgs*yskwfwsrnhkyytfrwl*iclcss*fln
*rrnssircqayncp*nlnii*kmypkhstnwckilgsmyy*wniwry*lqrsf*fhnsq
tdiplkyk*v

Frame C:
lykfl*krfli*llrlnnevrihiisil*stv*iftfitw**ifkhh**f*nksshw**f
cfi*tkrl*nfistleiskkt*rntrfwccr*srlnskpkpkpkskpstwqyfkctninr
*rit*dpkryhtnek*n*ssq*fivtts*anesyqttyk*lfkfitsntk*niesitsik
enpnh*snm---

---KSLVNVNPPESIILPKKFMIKTPLSEPIDGTIELMYGGRNMFTGSVTQGDADLPLNL
LDGTFEVIIKPNKSNLLPLKFKMIIHDSVRTTSSHQNVGRPKKPKEMDFVLAWGESPLDL
DSHMWCIHPNGSISHVYFGGRSVDKMSLEADTQNGFGPETISIIRLDGCKYVYAVHNFST
EGEIAQSGAKLTIAHETSTLFERCIPNTRQTGARFWVVCTIDGTSGDIDFKDHFNSTIHK
QIFH*nink

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM455 (AFM455Q) /CSM/AF/AFM4-C/AFM455Q.Seq.d/ 2516 0.0
CFH243 (CFH243Q) /CSM/CF/CFH2-B/CFH243Q.Seq.d/ 1471 0.0
AFG278 (AFG278Q) /CSM/AF/AFG2-D/AFG278Q.Seq.d/ 1457 0.0
AFD183 (AFD183Q) /CSM/AF/AFD1-D/AFD183Q.Seq.d/ 1445 0.0
AFK644 (AFK644Q) /CSM/AF/AFK6-B/AFK644Q.Seq.d/ 1443 0.0
AFE892 (AFE892Q) /CSM/AF/AFE8-D/AFE892Q.Seq.d/ 1443 0.0
SFE535 (SFE535Q) /CSM/SF/SFE5-B/SFE535Q.Seq.d/ 1437 0.0
SFF683 (SFF683Q) /CSM/SF/SFF6-D/SFF683Q.Seq.d/ 1431 0.0
AHR243 (AHR243Q) /CSM/AH/AHR2-B/AHR243Q.Seq.d/ 1429 0.0
AFF489 (AFF489Q) /CSM/AF/AFF4-D/AFF489Q.Seq.d/ 1425 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ373007) Dictyostelium discoideum cDNA clone:ddc15e12, 3' ... 1471 0.0 1
(BJ346961) Dictyostelium discoideum cDNA clone:dda25n14, 3' ... 1471 0.0 1
(BJ342912) Dictyostelium discoideum cDNA clone:dda15j09, 3' ... 1413 0.0 1
(BJ339895) Dictyostelium discoideum cDNA clone:dda10h24, 3' ... 1398 0.0 2
(BJ342415) Dictyostelium discoideum cDNA clone:dda13k20, 3' ... 1378 0.0 2
(BJ345533) Dictyostelium discoideum cDNA clone:dda28b04, 3' ... 1368 0.0 1
(BJ398529) Dictyostelium discoideum cDNA clone:dds12e22, 3' ... 1352 0.0 2
(BJ340129) Dictyostelium discoideum cDNA clone:dda11b24, 3' ... 1346 0.0 2
(BJ341702) Dictyostelium discoideum cDNA clone:dda7e21, 3' e... 1340 0.0 2
(BJ339774) Dictyostelium discoideum cDNA clone:dda10g10, 3' ... 1340 0.0 2
dna update 2009. 4.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000478_3794(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 69 3e-10
CP000112_1873(CP000112|pid:none) Desulfovibrio desulfuricans G20... 67 1e-09
CP000880_2513(CP000880|pid:none) Salmonella enterica subsp. ariz... 67 1e-09
CU928162_679(CU928162|pid:none) Escherichia coli ED1a chromosome... 62 4e-08
AE014075_780(AE014075|pid:none) Escherichia coli CFT073, complet... 60 2e-07
CP000243_708(CP000243|pid:none) Escherichia coli UTI89, complete... 60 2e-07
CP000247_733(CP000247|pid:none) Escherichia coli 536, complete g... 58 6e-07
AE001437_1067(AE001437|pid:none) Clostridium acetobutylicum ATCC... 57 1e-06
FM954973_832(FM954973|pid:none) Vibrio splendidus LGP32 chromoso... 56 2e-06
AE001437_1068(AE001437|pid:none) Clostridium acetobutylicum ATCC... 55 5e-06
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM455 is

5' end seq. ID AFM455F
5' end seq.
>AFM455F.Seq
TTTTATATAAATTTTTATAAAAACGTTTTTTAATTTAATTGTTGCGTTTAAACAATGAGG
TTAGGATCCATATCATCTCTATCTTGTGATCAACTGTGTAAATATTTACATTCATCACTT
GGTGATGAATATTCAAACATCATTAATAGTTTTAAAATAAATCAAGTCACTGGTGATGAT
TTTGTTTTATTTGAACAAAAAGATTATGAAACTTTATCAGTACCTTGGAAATTTCAAAAA
AAACTTAAAGAAATACAAGGTTCTGGTGTTGTAGATAATCCAGGCTCAACTCCAAACCCA
AGCCCAAACCCAAGTCCAAACCCAGTACCTGGCAATACTTCAAATGCACCAACATCAACA
GGTAGAGAATCACTTGAGACCCAAAGAGATATCATACAAATGAAAAGTAAAATTGATCTT
CTCAGTAATTCATTGTTACAACTAGTTGAGCAAATGAAAGTTACCAAACCACCTACAAAT
AACTTTTCAAATTTATCACCAGCAACACAAAATAAAATATTGAATCCATCACCTCAATCA
AAGAGAATCCCAATCATTGATCCAACATGTGXXXXXXXXXX
Length of 5' end seq. 581
3' end seq. ID AFM455Z
3' end seq.
>AFM455Z.Seq
XXXXXXXXXXTAAAATCATTGGTTAATGTCAATCCACCTGAAAGCATTATACTTCCCAAA
AAGTTTATGATTAAAACACCTCTTAGTGAACCTATAGATGGTACTATTGAATTGATGTAT
GGTGGTAGAAATATGTTTACTGGCAGTGTTACACAAGGTGATGCTGATCTTCCTCTAAAC
CTCTTGGATGGTACATTTGAGGTTATCATTAAACCCAATAAGAGTAATTTATTACCTTTA
AAGTTTAAAATGATTATACATGACTCTGTAAGAACCACTTCAAGCCATCAAAATGTCGGT
AGACCTAAAAAGCCTAAAGAAATGGATTTCGTTTTAGCTTGGGGGGAATCACCACTGGAT
TTGGATTCTCATATGTGGTGTATTCATCCTAATGGTTCTATTAGTCATGTTTATTTCGGG
GGTAGGAGTGTAGATAAAATGTCCTTGGAAGCTGATACTCAAAATGGTTTTGGTCCCGAA
ACCATAAGTATTATACGTTTAGATGGTTGTAAATATGTTTATGCAGTTCATAATTTCTCA
ACTGAAGGAGAAATAGCTCAATCAGGTGCCAAGCTTACAATTGCCCATGAAACCTCAACA
TTATTTGAAAGATGTATCCCAAACACTCGACAAACTGGTGCAAGATTTTGGGTAGTATGT
ACTATTGATGGAACATCTGGAGATATTGACTTCAAAGATCATTTTAATTCCACAATTCAC
AAACAGATATTCCATTAAAATATAAATAAGTA
Length of 3' end seq. 752
Connected seq. ID AFM455P
Connected seq.
>AFM455P.Seq
TTTTATATAAATTTTTATAAAAACGTTTTTTAATTTAATTGTTGCGTTTAAACAATGAGG
TTAGGATCCATATCATCTCTATCTTGTGATCAACTGTGTAAATATTTACATTCATCACTT
GGTGATGAATATTCAAACATCATTAATAGTTTTAAAATAAATCAAGTCACTGGTGATGAT
TTTGTTTTATTTGAACAAAAAGATTATGAAACTTTATCAGTACCTTGGAAATTTCAAAAA
AAACTTAAAGAAATACAAGGTTCTGGTGTTGTAGATAATCCAGGCTCAACTCCAAACCCA
AGCCCAAACCCAAGTCCAAACCCAGTACCTGGCAATACTTCAAATGCACCAACATCAACA
GGTAGAGAATCACTTGAGACCCAAAGAGATATCATACAAATGAAAAGTAAAATTGATCTT
CTCAGTAATTCATTGTTACAACTAGTTGAGCAAATGAAAGTTACCAAACCACCTACAAAT
AACTTTTCAAATTTATCACCAGCAACACAAAATAAAATATTGAATCCATCACCTCAATCA
AAGAGAATCCCAATCATTGATCCAACATGTG----------TAAAATCATTGGTTAATGT
CAATCCACCTGAAAGCATTATACTTCCCAAAAAGTTTATGATTAAAACACCTCTTAGTGA
ACCTATAGATGGTACTATTGAATTGATGTATGGTGGTAGAAATATGTTTACTGGCAGTGT
TACACAAGGTGATGCTGATCTTCCTCTAAACCTCTTGGATGGTACATTTGAGGTTATCAT
TAAACCCAATAAGAGTAATTTATTACCTTTAAAGTTTAAAATGATTATACATGACTCTGT
AAGAACCACTTCAAGCCATCAAAATGTCGGTAGACCTAAAAAGCCTAAAGAAATGGATTT
CGTTTTAGCTTGGGGGGAATCACCACTGGATTTGGATTCTCATATGTGGTGTATTCATCC
TAATGGTTCTATTAGTCATGTTTATTTCGGGGGTAGGAGTGTAGATAAAATGTCCTTGGA
AGCTGATACTCAAAATGGTTTTGGTCCCGAAACCATAAGTATTATACGTTTAGATGGTTG
TAAATATGTTTATGCAGTTCATAATTTCTCAACTGAAGGAGAAATAGCTCAATCAGGTGC
CAAGCTTACAATTGCCCATGAAACCTCAACATTATTTGAAAGATGTATCCCAAACACTCG
ACAAACTGGTGCAAGATTTTGGGTAGTATGTACTATTGATGGAACATCTGGAGATATTGA
CTTCAAAGATCATTTTAATTCCACAATTCACAAACAGATATTCCATTAAAATATAAATAA
GTA
Length of connected seq. 1313
Full length Seq ID -
Full length Seq. -
Length of full length seq. -