AFM453
Library AF
(Link to library)
Clone ID AFM453
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM453P
(Link to Original site)
Representative DNA sequence
>AFM453 (AFM453Q) /CSM/AF/AFM4-C/AFM453Q.Seq.d/
AAATTAAAAAAATAAATTCAACTCATCATAATGAAAAAACAAACATTTGAGGAACCTGAT
GACTATGAGGCTAAATTATTAAAACAACAAGAGGAGTTTTTAAAAAGCGGATCTAAACCC
TCAGTTTCGACAGTCACAAGAGGACCACCACCAATTGTTCTTTCAAAATCACAAGCAAAA
CAAAGAGAACAAGAAACTACTGTTAATACATCAACATCATCAACAGCAACAGCAACAGTA
ACAAGTAAATTTAAGCATCAAAAATTATCAAATAATGGTATACCAATTATAGATGAACCA
ATGGGAGAAAGAGATGTTGTATCGTTATCCGATGATTTAAATCATTTAAAATCAAAATCT
TCAAACTTAACATCAACTTCAAGATTTAAATTAAATAGTCAAAAAAAAAANCXXXXXXXX
XXCCTCTACAACTACTACAAATCAAACAACAACAGCAACAACAACAGCAACAACAACAAC
AACAAAAACTAATAAAACAGTTCAATTTAAAGATGTTGAAATTGAGAATAAAGCGGACTT
AGAATCAAGTATAGAGACTAAACCAACACAAAGCGAACCAGAATATGATGAAACTACAAT
TTGGATGAAAGATTTAGATAAACAAGATGAAAGAAAAGGATTTAAAGAAACAATATTAAA
TTTTAGAGAGTGGAGATTTAATTTCACAGGTGAAATCATTCAAAGAGGATCAAGTACACC
AACATCACAAGGATTACATCATCATGGATCAGAAGCAGGTGAAGCAGGTTATACATTGAA
TGAAATAATTATGTTAATTAAAAGTTCAAATCATTCTCAAAAATGTATTGCATTAAAAAC
TTTAACTTTTATTTTACAAAAAGTTCATAATGGTTCATATGGTTCATTTAATAAATTACA
ATTAATTGATGAAATATTAAAATTAAAGATACCAAGATTATTAAGAATTTCAATTGATTC
ACAAGTACCATCAATATTGATATCTGCATTAACATGTATTCATGCATTGATTGTACCAAC
TATTAAAGAGAATGCATATGAAATGATTGAATCACGTAGTCATAGAGCATATGAAACCAT
TTCAATTAAACCAATATCAAGGAATCAAAGAAACAAAAGNAANAGAAGAGGA
sequence update 2009. 4. 3
Translated Amino Acid sequence
klkk*IQLIIMKKQTFEEPDDYEAKLLKQQEEFLKSGSKPSVSTVTRGPPPIVLSKSQAK
QREQETTVNTSTSSTATATVTSKFKHQKLSNNGIPIIDEPMGERDVVSLSDDLNHLKSKS
SNLTSTSRFKLNSQKKX---

---STTTTNQTTTATTTATTTTTKTNKTVQFKDVEIENKADLESSIETKPTQSEPEYDET
TIWMKDLDKQDERKGFKETILNFREWRFNFTGEIIQRGSSTPTSQGLHHHGSEAGEAGYT
LNEIIMLIKSSNHSQKCIALKTLTFILQKVHNGSYGSFNKLQLIDEILKLKIPRLLRISI
DSQVPSILISALTCIHALIVPTIKENAYEMIESRSHRAYETISIKPISRNQRNKXXRRG


Translated Amino Acid sequence (All Frames)
Frame A:
klkk*IQLIIMKKQTFEEPDDYEAKLLKQQEEFLKSGSKPSVSTVTRGPPPIVLSKSQAK
QREQETTVNTSTSSTATATVTSKFKHQKLSNNGIPIIDEPMGERDVVSLSDDLNHLKSKS
SNLTSTSRFKLNSQKKX---

---plqllqikqqqqqqqqqqqqqklikqfnlkmlklrikrt*nqv*rlnqhkanqnmmk
lqfg*ki*inkmkekdlkkqy*ilesgdlisqvksfkedqvhqhhkdyiimdqkqvkqvi
h*mk*lc*lkvqiilknvlh*kl*llfykkfimvhmvhlinyn*lmky*n*ryqdy*efq
lihkyhqy*ylh*hvfmh*lyqllkrmhmk*lnhvviehmkpfqlnqyqgiketkxxee

Frame B:
n*knkfnss**knkhlrnlmtmrlny*nnkrsf*kadlnpqfrqsqedhhqlffqnhkqn
kenkklllihqhhqqqqqq*qvnlsiknyqimvyql*mnqwekemlyrypmi*ii*nqnl
qt*hqlqdln*ivkkkx---

---lynyyksnnnsnnnsnnnnnkn**nssi*rc*n*e*sglrikyrd*tntkrtri**n
ynlderfr*tr*kkri*rnnikf*rvei*fhr*nhskrikytnitritsswirsr*srly
ie*nnyvn*kfksfskmyciknfnfyftkss*wfiwfi**itin**nikikdtkiiknfn
*ftstinidicinmyscidctny*reci*nd*it*s*si*nhfn*tnikeskkqkxxkr

Frame C:
ikkinsthhnektni*gt**l*g*iikttrgvfkkri*tlsfdshkrtttncsfkitskt
krtrnyc*yiniinsnsnsnk*i*askiik*wytnyr*tngrkrccivir*fksfkikif
klninfki*ik*skkk---

---STTTTNQTTTATTTATTTTTKTNKTVQFKDVEIENKADLESSIETKPTQSEPEYDET
TIWMKDLDKQDERKGFKETILNFREWRFNFTGEIIQRGSSTPTSQGLHHHGSEAGEAGYT
LNEIIMLIKSSNHSQKCIALKTLTFILQKVHNGSYGSFNKLQLIDEILKLKIPRLLRISI
DSQVPSILISALTCIHALIVPTIKENAYEMIESRSHRAYETISIKPISRNQRNKXXRRG

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM453 (AFM453Q) /CSM/AF/AFM4-C/AFM453Q.Seq.d/ 1271 0.0
SLD149 (SLD149Q) /CSM/SL/SLD1-C/SLD149Q.Seq.d/ 942 0.0
AFL375 (AFL375Q) /CSM/AF/AFL3-D/AFL375Q.Seq.d/ 642 0.0
VFN177 (VFN177Q) /CSM/VF/VFN1-D/VFN177Q.Seq.d/ 46 0.001
VHM101 (VHM101Q) /CSM/VH/VHM1-A/VHM101Q.Seq.d/ 44 0.005
SSB704 (SSB704Q) /CSM/SS/SSB7-A/SSB704Q.Seq.d/ 44 0.005
SLJ681 (SLJ681Q) /CSM/SL/SLJ6-D/SLJ681Q.Seq.d/ 44 0.005
SLI404 (SLI404Q) /CSM/SL/SLI4-A/SLI404Q.Seq.d/ 44 0.005
SLF811 (SLF811Q) /CSM/SL/SLF8-A/SLF811Q.Seq.d/ 44 0.005
SLF683 (SLF683Q) /CSM/SL/SLF6-D/SLF683Q.Seq.d/ 44 0.005

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ346938) Dictyostelium discoideum cDNA clone:dda25j14, 3' ... 1271 0.0 1
(AU052327) Dictyostelium discoideum slug cDNA, clone SLD149. 918 0.0 2
(BJ329601) Dictyostelium discoideum cDNA clone:dda25j14, 5' ... 769 0.0 1
(BJ328332) Dictyostelium discoideum cDNA clone:dda23f19, 5' ... 642 e-180 1
(AU061095) Dictyostelium discoideum slug cDNA, clone SLD149. 281 3e-71 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 1e-05 18
(AY740525) Tetrahymena thermophila cadmium-inducible metallo... 42 3e-05 5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 40 7e-05 17
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 38 8e-05 12
(EH238864) JGI_ACAC18996.fwd ACAC Phakopsora pachyrhizi TW72... 60 2e-04 1
dna update 2009. 4.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC077222_1(BC077222|pid:none) Xenopus laevis hypothetical protei... 69 2e-10
BC167356_1(BC167356|pid:none) Xenopus tropicalis hypothetical pr... 67 8e-10
AK167589_1(AK167589|pid:none) Mus musculus 14 days pregnant adul... 66 2e-09
AK166232_1(AK166232|pid:none) Mus musculus mammary gland RCB-052... 66 2e-09
(Q91VM0) RecName: Full=RNA polymerase II-associated protein 1; ... 66 2e-09
AK161487_1(AK161487|pid:none) Mus musculus adult male testis cDN... 66 2e-09
BC117973_1(BC117973|pid:none) Mus musculus RNA polymerase II ass... 66 2e-09
(Q9BWH6) RecName: Full=RNA polymerase II-associated protein 1; ... 65 3e-09
AB037824_1(AB037824|pid:none) Homo sapiens mRNA for KIAA1403 pro... 65 3e-09
(A0JN53) RecName: Full=RNA polymerase II-associated protein 1; ... 64 1e-08
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM453 is

5' end seq. ID AFM453F
5' end seq.
>AFM453F.Seq
AAATTAAAAAAATAAATTCAACTCATCATAATGAAAAAACAAACATTTGAGGAACCTGAT
GACTATGAGGCTAAATTATTAAAACAACAAGAGGAGTTTTTAAAAAGCGGATCTAAACCC
TCAGTTTCGACAGTCACAAGAGGACCACCACCAATTGTTCTTTCAAAATCACAAGCAAAA
CAAAGAGAACAAGAAACTACTGTTAATACATCAACATCATCAACAGCAACAGCAACAGTA
ACAAGTAAATTTAAGCATCAAAAATTATCAAATAATGGTATACCAATTATAGATGAACCA
ATGGGAGAAAGAGATGTTGTATCGTTATCCGATGATTTAAATCATTTAAAATCAAAATCT
TCAAACTTAACATCAACTTCAAGATTTAAATTAAATAGTCAAAAAAAAAANCXXXXXXXX
XX
Length of 5' end seq. 422
3' end seq. ID AFM453Z
3' end seq.
>AFM453Z.Seq
XXXXXXXXXXCCTCTACAACTACTACAAATCAAACAACAACAGCAACAACAACAGCAACA
ACAACAACAACAAAAACTAATAAAACAGTTCAATTTAAAGATGTTGAAATTGAGAATAAA
GCGGACTTAGAATCAAGTATAGAGACTAAACCAACACAAAGCGAACCAGAATATGATGAA
ACTACAATTTGGATGAAAGATTTAGATAAACAAGATGAAAGAAAAGGATTTAAAGAAACA
ATATTAAATTTTAGAGAGTGGAGATTTAATTTCACAGGTGAAATCATTCAAAGAGGATCA
AGTACACCAACATCACAAGGATTACATCATCATGGATCAGAAGCAGGTGAAGCAGGTTAT
ACATTGAATGAAATAATTATGTTAATTAAAAGTTCAAATCATTCTCAAAAATGTATTGCA
TTAAAAACTTTAACTTTTATTTTACAAAAAGTTCATAATGGTTCATATGGTTCATTTAAT
AAATTACAATTAATTGATGAAATATTAAAATTAAAGATACCAAGATTATTAAGAATTTCA
ATTGATTCACAAGTACCATCAATATTGATATCTGCATTAACATGTATTCATGCATTGATT
GTACCAACTATTAAAGAGAATGCATATGAAATGATTGAATCACGTAGTCATAGAGCATAT
GAAACCATTTCAATTAAACCAATATCAAGGAATCAAAGAAACAAAAGNAANAGAAGAGGA
Length of 3' end seq. 720
Connected seq. ID AFM453P
Connected seq.
>AFM453P.Seq
AAATTAAAAAAATAAATTCAACTCATCATAATGAAAAAACAAACATTTGAGGAACCTGAT
GACTATGAGGCTAAATTATTAAAACAACAAGAGGAGTTTTTAAAAAGCGGATCTAAACCC
TCAGTTTCGACAGTCACAAGAGGACCACCACCAATTGTTCTTTCAAAATCACAAGCAAAA
CAAAGAGAACAAGAAACTACTGTTAATACATCAACATCATCAACAGCAACAGCAACAGTA
ACAAGTAAATTTAAGCATCAAAAATTATCAAATAATGGTATACCAATTATAGATGAACCA
ATGGGAGAAAGAGATGTTGTATCGTTATCCGATGATTTAAATCATTTAAAATCAAAATCT
TCAAACTTAACATCAACTTCAAGATTTAAATTAAATAGTCAAAAAAAAAANC--------
--CCTCTACAACTACTACAAATCAAACAACAACAGCAACAACAACAGCAACAACAACAAC
AACAAAAACTAATAAAACAGTTCAATTTAAAGATGTTGAAATTGAGAATAAAGCGGACTT
AGAATCAAGTATAGAGACTAAACCAACACAAAGCGAACCAGAATATGATGAAACTACAAT
TTGGATGAAAGATTTAGATAAACAAGATGAAAGAAAAGGATTTAAAGAAACAATATTAAA
TTTTAGAGAGTGGAGATTTAATTTCACAGGTGAAATCATTCAAAGAGGATCAAGTACACC
AACATCACAAGGATTACATCATCATGGATCAGAAGCAGGTGAAGCAGGTTATACATTGAA
TGAAATAATTATGTTAATTAAAAGTTCAAATCATTCTCAAAAATGTATTGCATTAAAAAC
TTTAACTTTTATTTTACAAAAAGTTCATAATGGTTCATATGGTTCATTTAATAAATTACA
ATTAATTGATGAAATATTAAAATTAAAGATACCAAGATTATTAAGAATTTCAATTGATTC
ACAAGTACCATCAATATTGATATCTGCATTAACATGTATTCATGCATTGATTGTACCAAC
TATTAAAGAGAATGCATATGAAATGATTGAATCACGTAGTCATAGAGCATATGAAACCAT
TTCAATTAAACCAATATCAAGGAATCAAAGAAACAAAAGNAANAGAAGAGGA
Length of connected seq. 1122
Full length Seq ID -
Full length Seq. -
Length of full length seq. -