VFF237
Library VF
(Link to library)
Clone ID VFF237
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14949-1
Original site URL
Representative seq. ID VFF237P
(Link to Original site)
Representative DNA sequence
>VFF237 (VFF237Q) /CSM/VF/VFF2-B/VFF237Q.Seq.d/
AAACAATATAAAAATGATTTCATTAGAAGATCTATCACCAACATTATGGAAATCACCAGA
TAAAGAGGGTGAATTAAAGAAACAAGGACATGTAGTAAAGAATTGGAAGAAAAGAAAGTT
TATTATTCAAAATGATATGTTATTTTATTTTAAGGATAAAGAGGAGAGACCAGTTGGAGC
GGTGCCATTAAGAATGTCACGTTGCTATGAAAATAAATCATTAGGTAAACCAAATTGTTT
CGAATTAGTATCACCAAGAATCAATAAAACATTTTTCATTCAAGCCAATACACCAGATGA
AATGGCAAGTTGGATGAAAGCAGTTGAGAAAGGATCAGAATATAGCACAGTATCACAACC
ATTCAATCTTAAACATGAGGTACATGTTGATTTCAATTCAGCAACTGGTTTCTCTGGTTT
ACCAAAAGAATGGGAAGTTATCTTAAAGTCTTCAAATGTTTCAAAACAAGAAGTACTCGA
TAAACCAAGTGAATGGTTATCAGTTTTAGAATTTCAAGCTGGTAGAACAATGGAAAAATC
AAATTCTCAAAATTTATCTGCACTTXXXXXXXXXXAACTTTGGGTTGCAATGGAGTTTAT
GGGTGGTGGTTGTTTAACAGACATTTTAGAGGCATTTGATAATATCAAAATGAGTGAGAT
TCAAATTGCTTATGTGGTTAAAGAGACCTTGAAGGCATTGCAATACATTCATAGTCTTCA
TCGTATTCATAGAGATATAAAGAGTGATAATATTTTATTGGGCTCAGAGGGTAGTGTAAA
GATTGCTGATTTTGGTTATGCCGCTCAATTAACTCAAAAACAACAAAAACGTAATACCGT
CGTTGGTACCCCTTATTGGATGGCCCCAGAACTCATTAGAGGTCACGATTATGGTGTCAA
GGTTGATATTTGGTCTTTGGGTATCATGATGATGGAAATGGCTGAAGGTGAACCACCTTA
TATGGATTTCCCACCATTGCGTGCTCTTTTCCTCATCACTACTAAAGGTATTCCACCACT
TAAAGAAACAACCAAATGGAGTAAAACTTTCCAAGATTTCTTCTCGAAGTGTCTCGATAT
CAATGTTGCTAATCGTCCTGATGCTACCGATCTTTTAAAACATCCTTTCATGGATTTGGC
ATGTNATTCCTCTGAATTTAAACCATTAATTCAAGCCGCAAGAAATGTTTAATCTTTGTC
GCTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
NNIKMISLEDLSPTLWKSPDKEGELKKQGHVVKNWKKRKFIIQNDMLFYFKDKEERPVGA
VPLRMSRCYENKSLGKPNCFELVSPRINKTFFIQANTPDEMASWMKAVEKGSEYSTVSQP
FNLKHEVHVDFNSATGFSGLPKEWEVILKSSNVSKQEVLDKPSEWLSVLEFQAGRTMEKS
NSQNLSAL---

---LWVAMEFMGGGCLTDILEAFDNIKMSEIQIAYVVKETLKALQYIHSLHRIHRDIKSD
NILLGSEGSVKIADFGYAAQLTQKQQKRNTVVGTPYWMAPELIRGHDYGVKVDIWSLGIM
MMEMAEGEPPYMDFPPLRALFLITTKGIPPLKETTKWSKTFQDFFSKCLDINVANRPDAT
DLLKHPFMDLACXSSEFKPLIQAARNV*slsl


Translated Amino Acid sequence (All Frames)
Frame A:
kqykndfirrsitnimeitr*rg*iketrtcskeleekkvyysk*yvilf*g*rgetsws
gaiknvtll*k*iir*tklfrisitknq*nifhssqytr*ngkldess*eriri*hsitt
iqs*t*gtc*fqfsnwflwftkrmgsylkvfkcfktrstr*tk*mvisfrissw*nngki
kfskfict---

---nfglqwslwvvvv*qtf*rhliisk*vrfkllmwlkrp*rhcntfivfivfiei*rv
iifywaqrvv*rllilvmpln*lknnknvipslvpligwpqnslevtimvsrlifglwvs
**wkwlkvnhliwishhcvlfsssllkvfhhlkkqpngvklskissrsvsismllivlml
pif*nilswiwhviplnlnh*fkpqemfnlcrl

Frame B:
NNIKMISLEDLSPTLWKSPDKEGELKKQGHVVKNWKKRKFIIQNDMLFYFKDKEERPVGA
VPLRMSRCYENKSLGKPNCFELVSPRINKTFFIQANTPDEMASWMKAVEKGSEYSTVSQP
FNLKHEVHVDFNSATGFSGLPKEWEVILKSSNVSKQEVLDKPSEWLSVLEFQAGRTMEKS
NSQNLSAL---

---tlgcngvygwwlfnrhfrgi**yqne*dsnclcg*rdlegiaihs*sssys*ryke*
*yfiglrg*ckdc*fwlcrsinskttkt*yrrwyplldgprth*rsrlwcqg*ylvfgyh
ddgng*r*ttlygfptiacsfphhy*rystt*rnnqme*nfprfllevsryqcc*ss*cy
rsfktsfhgfgmxfl*i*tinssrkkclifva

Frame C:
ti*k*fh*kiyhqhygnhqikrvn*rnkdm**rigrkesllfkmicyfilrikrrdqler
ch*echvamkinh*vnqivsn*yhqesikhfsfkpihqmkwqvg*kqlrkdqniaqyhnh
silnmrymlisiqqlvslvyqkngkls*slqmfqnkkysinqvngyqf*nfklveqwknq
ilkiylh---

---LWVAMEFMGGGCLTDILEAFDNIKMSEIQIAYVVKETLKALQYIHSLHRIHRDIKSD
NILLGSEGSVKIADFGYAAQLTQKQQKRNTVVGTPYWMAPELIRGHDYGVKVDIWSLGIM
MMEMAEGEPPYMDFPPLRALFLITTKGIPPLKETTKWSKTFQDFFSKCLDINVANRPDAT
DLLKHPFMDLACXSSEFKPLIQAARNV*slsl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFF237 (VFF237Q) /CSM/VF/VFF2-B/VFF237Q.Seq.d/ 2323 0.0
VFF409 (VFF409Q) /CSM/VF/VFF4-A/VFF409Q.Seq.d/ 1219 0.0
VFG871 (VFG871Q) /CSM/VF/VFG8-C/VFG871Q.Seq.d/ 1213 0.0
VFD425 (VFD425Q) /CSM/VF/VFD4-B/VFD425Q.Seq.d/ 1187 0.0
AFE641 (AFE641Q) /CSM/AF/AFE6-B/AFE641Q.Seq.d/ 1187 0.0
VFE896 (VFE896Q) /CSM/VF/VFE8-D/VFE896Q.Seq.d/ 1185 0.0
SFD680 (SFD680Q) /CSM/SF/SFD6-D/SFD680Q.Seq.d/ 1185 0.0
VFF240 (VFF240Q) /CSM/VF/VFF2-B/VFF240Q.Seq.d/ 1168 0.0
VFF415 (VFF415Q) /CSM/VF/VFF4-A/VFF415Q.Seq.d/ 1164 0.0
AFK585 (AFK585Q) /CSM/AF/AFK5-D/AFK585Q.Seq.d/ 1158 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF277804|AF277804.1 Dictyostelium discoideum p21-activated protein kinase-like protein mRNA, partial cds. 1029 0.0 4
U67716|U67716.1 Dictyostelium discoideum myosin I heavy chain kinase (mihck) mRNA, complete cds. 94 8e-50 6
Y10158|Y10158.1 D.discoideum mRNA for STE20/pak kinase homologue. 94 1e-49 6
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence. 94 1e-43 6
AF131221|AF131221.1 Dictyostelium discoideum p21-activated protein kinase PakA (pakA) mRNA, complete cds. 66 6e-28 5
U51923|U51923.3 Dictyostelium discoideum STE20-telated kinase DPAK1 (dpak1) mRNA, complete cds. 60 3e-26 5
AZ677365|AZ677365.1 ENTFX50TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 4e-11 5
AZ684578|AZ684578.1 ENTJV90TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 4e-11 5
BH161927|BH161927.1 ENTQY64TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 3e-08 5
AZ676464|AZ676464.1 ENTKP26TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 42 3e-08 5
dna update 2003. 9.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF277804_1(AF277804|pid:none) Dictyostelium discoideum PakC mRNA... 416 e-115
(Q55GV3) RecName: Full=Serine/threonine-protein kinase pakC; ... 416 e-115
Y10158_1(Y10158|pid:none) D.discoideum mRNA for STE20/pak kinase... 305 2e-81
(Q869N2) RecName: Full=Serine/threonine-protein kinase pakB; ... 305 2e-81
U67716_1(U67716|pid:none) Dictyostelium discoideum myosin I heav... 305 2e-81
AY870660_1(AY870660|pid:none) Entamoeba histolytica p21-activate... 300 7e-80
AF131221_1(AF131221|pid:none) Dictyostelium discoideum p21-activ... 283 1e-74
AE014297_446(AE014297|pid:none) Drosophila melanogaster chromoso... 237 5e-61
U56080_1(U56080|pid:none) Drosophila melanogaster p21-activated ... 236 1e-60
AF092132_1(AF092132|pid:none) Homo sapiens PAK2 mRNA, complete c... 236 2e-60
protein update 2009. 6.19
PSORT

psg: 0.75 gvh: 0.33 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: plasma membrane

>> prediction for VFF237 is cyt

5' end seq. ID VFF237F
5' end seq.
>VFF237F.Seq
AAACAATATAAAAATGATTTCATTAGAAGATCTATCACCAACATTATGGAAATCACCAGA
TAAAGAGGGTGAATTAAAGAAACAAGGACATGTAGTAAAGAATTGGAAGAAAAGAAAGTT
TATTATTCAAAATGATATGTTATTTTATTTTAAGGATAAAGAGGAGAGACCAGTTGGAGC
GGTGCCATTAAGAATGTCACGTTGCTATGAAAATAAATCATTAGGTAAACCAAATTGTTT
CGAATTAGTATCACCAAGAATCAATAAAACATTTTTCATTCAAGCCAATACACCAGATGA
AATGGCAAGTTGGATGAAAGCAGTTGAGAAAGGATCAGAATATAGCACAGTATCACAACC
ATTCAATCTTAAACATGAGGTACATGTTGATTTCAATTCAGCAACTGGTTTCTCTGGTTT
ACCAAAAGAATGGGAAGTTATCTTAAAGTCTTCAAATGTTTCAAAACAAGAAGTACTCGA
TAAACCAAGTGAATGGTTATCAGTTTTAGAATTTCAAGCTGGTAGAACAATGGAAAAATC
AAATTCTCAAAATTTATCTGCACTT----------
Length of 5' end seq. 565
3' end seq. ID VFF237Z
3' end seq.
>VFF237Z.Seq
----------AACTTTGGGTTGCAATGGAGTTTATGGGTGGTGGTTGTTTAACAGACATT
TTAGAGGCATTTGATAATATCAAAATGAGTGAGATTCAAATTGCTTATGTGGTTAAAGAG
ACCTTGAAGGCATTGCAATACATTCATAGTCTTCATCGTATTCATAGAGATATAAAGAGT
GATAATATTTTATTGGGCTCAGAGGGTAGTGTAAAGATTGCTGATTTTGGTTATGCCGCT
CAATTAACTCAAAAACAACAAAAACGTAATACCGTCGTTGGTACCCCTTATTGGATGGCC
CCAGAACTCATTAGAGGTCACGATTATGGTGTCAAGGTTGATATTTGGTCTTTGGGTATC
ATGATGATGGAAATGGCTGAAGGTGAACCACCTTATATGGATTTCCCACCATTGCGTGCT
CTTTTCCTCATCACTACTAAAGGTATTCCACCACTTAAAGAAACAACCAAATGGAGTAAA
ACTTTCCAAGATTTCTTCTCGAAGTGTCTCGATATCAATGTTGCTAATCGTCCTGATGCT
ACCGATCTTTTAAAACATCCTTTCATGGATTTGGCATGTNATTCCTCTGAATTTAAACCA
TTAATTCAAGCCGCAAGAAATGTTTAATCTTTGTCGCTTA
Length of 3' end seq. 630
Connected seq. ID VFF237P
Connected seq.
>VFF237P.Seq
AAACAATATAAAAATGATTTCATTAGAAGATCTATCACCAACATTATGGAAATCACCAGA
TAAAGAGGGTGAATTAAAGAAACAAGGACATGTAGTAAAGAATTGGAAGAAAAGAAAGTT
TATTATTCAAAATGATATGTTATTTTATTTTAAGGATAAAGAGGAGAGACCAGTTGGAGC
GGTGCCATTAAGAATGTCACGTTGCTATGAAAATAAATCATTAGGTAAACCAAATTGTTT
CGAATTAGTATCACCAAGAATCAATAAAACATTTTTCATTCAAGCCAATACACCAGATGA
AATGGCAAGTTGGATGAAAGCAGTTGAGAAAGGATCAGAATATAGCACAGTATCACAACC
ATTCAATCTTAAACATGAGGTACATGTTGATTTCAATTCAGCAACTGGTTTCTCTGGTTT
ACCAAAAGAATGGGAAGTTATCTTAAAGTCTTCAAATGTTTCAAAACAAGAAGTACTCGA
TAAACCAAGTGAATGGTTATCAGTTTTAGAATTTCAAGCTGGTAGAACAATGGAAAAATC
AAATTCTCAAAATTTATCTGCACTT----------AACTTTGGGTTGCAATGGAGTTTAT
GGGTGGTGGTTGTTTAACAGACATTTTAGAGGCATTTGATAATATCAAAATGAGTGAGAT
TCAAATTGCTTATGTGGTTAAAGAGACCTTGAAGGCATTGCAATACATTCATAGTCTTCA
TCGTATTCATAGAGATATAAAGAGTGATAATATTTTATTGGGCTCAGAGGGTAGTGTAAA
GATTGCTGATTTTGGTTATGCCGCTCAATTAACTCAAAAACAACAAAAACGTAATACCGT
CGTTGGTACCCCTTATTGGATGGCCCCAGAACTCATTAGAGGTCACGATTATGGTGTCAA
GGTTGATATTTGGTCTTTGGGTATCATGATGATGGAAATGGCTGAAGGTGAACCACCTTA
TATGGATTTCCCACCATTGCGTGCTCTTTTCCTCATCACTACTAAAGGTATTCCACCACT
TAAAGAAACAACCAAATGGAGTAAAACTTTCCAAGATTTCTTCTCGAAGTGTCTCGATAT
CAATGTTGCTAATCGTCCTGATGCTACCGATCTTTTAAAACATCCTTTCATGGATTTGGC
ATGTNATTCCTCTGAATTTAAACCATTAATTCAAGCCGCAAGAAATGTTTAATCTTTGTC
GCTTA
Length of connected seq. 1195
Full length Seq ID -
Full length Seq. -
Length of full length seq. -