NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM447
Library AF
(Link to library)
Clone ID AFM447
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM447 (AFM447Q) /CSM/AF/AFM4-B/AFM447Q.Seq.d/
XXXXXXXXXXATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAA
ATTATTAAAGTTACATNTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCA
TCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTG
AATGGTCCAATTCCATCTGCTGATAANAAATTTGAATCNCTCCAAATCATTATCCCNCAA
AAACAAGTTAAACGTCAATCAGATATGNACGTTGGTGTTATGTCATCCGCTCATTGNGTC
TGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCNCTGTTGAAACCAATGAACCANAG
AAAGAATTAGCNCCAGCTTACGCTTTATTAGGTCCAATTCAANAGAAATTTGTCTATATT
TCTGATTTCATTGAACCAATTGCTGATGGNACTGCCGACAATGTTTTCATCTCAAAATCA
TATGATGCTACCTCTCNCTTTGAAACCNCTTGTGAAGATGTCATGGATATGGACAANAGA
ATCNCTGGTAAAGATTTAGTTCNCNCTGNTCATCCNAATATTCTTAAACAACAAGAAGAA
GCTGGNAACCAAGAACAAGAAGAACAATAAAAAAAAAAATAAAAAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---MLNKPIENIVFDEEKKIIKVTXEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILN
GPIPSADXKFESLQIIIPQKQVKRQSDMXVGVMSSAHXVCPKGKYIAIVSAXVETNEPXK
ELAPAYALLGPIQXKFVYISDFIEPIADGTADNVFISKSYDATSXFETXCEDVMDMDXRI
XGKDLVXXXHPNILKQQEEAGNQEQEEQ*kkk*k
Translated Amino Acid sequence (All Frames) 
Frame A:
---ya**tn*kycfr*rkeny*syx*r*ncnm**ncl*siifpk*ssker*nysfnlyfe
wsnsic**xi*ixpnhypxkts*tsiryxrwcyvirslxlskg*ihchrfsxc*nq*txe
risxslrfirsnsxeiclyf*fh*tnc*wxcrqcfhlkii*cylsl*nxl*rchgygqxn
xw*rfssxxssxys*ttrrswxprtrrtikkkikk


Frame B:
---MLNKPIENIVFDEEKKIIKVTXEGETVTCDKIVCDPSYFPNKVQKKGKIIRSICILN
GPIPSADXKFESLQIIIPQKQVKRQSDMXVGVMSSAHXVCPKGKYIAIVSAXVETNEPXK
ELAPAYALLGPIQXKFVYISDFIEPIADGTADNVFISKSYDATSXFETXCEDVMDMDXRI
XGKDLVXXXHPNILKQQEEAGNQEQEEQ*kkk*k


Frame C:
---clinqlkilfsmkkrkllklhxkvkl*hviklfvihhisqikfkrkvklfvqfvf*m
vqfhllixnlnxskslsxknklnvnqixtlvlchplixsvqrvntlpsfqpllkpmnxrk
n*xqltly*vqfxrnlsiflislnqllmxlptmfssqnhmmlplxlkplvkmswiwtxes
lvki*fxlxixiflnnkkklxtknkknnkkknkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM447 (AFM447Q) /CSM/AF/AFM4-B/AFM447Q.Seq.d/                       1106   0.0
SFI510 (SFI510Q) /CSM/SF/SFI5-A/SFI510Q.Seq.d/                       1078   0.0
SFE141 (SFE141Q) /CSM/SF/SFE1-B/SFE141Q.Seq.d/                       1070   0.0
SFD219 (SFD219Q) /CSM/SF/SFD2-A/SFD219Q.Seq.d/                       1068   0.0
AFN874 (AFN874Q) /CSM/AF/AFN8-D/AFN874Q.Seq.d/                       1065   0.0
SSD420 (SSD420Q) /CSM/SS/SSD4-A/SSD420Q.Seq.d/                       1063   0.0
SFJ449 (SFJ449Q) /CSM/SF/SFJ4-C/SFJ449Q.Seq.d/                       1061   0.0
CFC760 (CFC760Q) /CSM/CF/CFC7-C/CFC760Q.Seq.d/                       1061   0.0
SFL394 (SFL394Q) /CSM/SF/SFL3-D/SFL394Q.Seq.d/                       1055   0.0
SFJ795 (SFJ795Q) /CSM/SF/SFJ7-D/SFJ795Q.Seq.d/                       1053   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346889) Dictyostelium discoideum cDNA clone:dda25n12, 3' ...  1106   0.0    1
(BJ403008) Dictyostelium discoideum cDNA clone:dds18c03, 3' ...  1053   0.0    2
(BJ400207) Dictyostelium discoideum cDNA clone:dds9a11, 3' e...  1053   0.0    2
(BJ401818) Dictyostelium discoideum cDNA clone:dds19b14, 3' ...  1053   0.0    2
(BJ374122) Dictyostelium discoideum cDNA clone:ddc6h15, 3' e...  1053   0.0    2
(BJ402241) Dictyostelium discoideum cDNA clone:dds20n23, 3' ...  1053   0.0    1
(BJ399694) Dictyostelium discoideum cDNA clone:dds7e06, 3' e...  1053   0.0    1
(BJ377772) Dictyostelium discoideum cDNA clone:ddc25i19, 3' ...  1053   0.0    1
(BJ345773) Dictyostelium discoideum cDNA clone:dda28d20, 3' ...  1053   0.0    1
(BJ341659) Dictyostelium discoideum cDNA clone:dda7j14, 3' e...  1053   0.0    1
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09...   189   6e-47
EF085049_1(EF085049|pid:none) Picea sitchensis clone WS0297_P09 ...   189   6e-47
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ...   184   1e-45
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ...   183   4e-45
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia...   181   1e-44
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   181   1e-44
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   181   1e-44
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA.            181   1e-44
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   181   2e-44
(Q8HXX7) RecName: Full=Rab GDP dissociation inhibitor alpha;    ...   180   3e-44
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM447 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM447Z
3' end seq. 
>AFM447Z.Seq
XXXXXXXXXXATATGCTTAATAAACCAATTGAAAATATTGTTTTCGATGAAGAAAAGAAA
ATTATTAAAGTTACATNTGAAGGTGAAACTGTAACATGTGATAAAATTGTTTGTGATCCA
TCATATTTCCCAAATAAAGTTCAAAAGAAAGGTAAAATTATTCGTTCAATTTGTATTTTG
AATGGTCCAATTCCATCTGCTGATAANAAATTTGAATCNCTCCAAATCATTATCCCNCAA
AAACAAGTTAAACGTCAATCAGATATGNACGTTGGTGTTATGTCATCCGCTCATTGNGTC
TGTCCAAAGGGTAAATACATTGCCATCGTTTCAGCCNCTGTTGAAACCAATGAACCANAG
AAAGAATTAGCNCCAGCTTACGCTTTATTAGGTCCAATTCAANAGAAATTTGTCTATATT
TCTGATTTCATTGAACCAATTGCTGATGGNACTGCCGACAATGTTTTCATCTCAAAATCA
TATGATGCTACCTCTCNCTTTGAAACCNCTTGTGAAGATGTCATGGATATGGACAANAGA
ATCNCTGGTAAAGATTTAGTTCNCNCTGNTCATCCNAATATTCTTAAACAACAAGAAGAA
GCTGGNAACCAAGAACAAGAAGAACAATAAAAAAAAAAATAAAAAAA
Length of 3' end seq. 647
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -