AFM446
Library AF
(Link to library)
Clone ID AFM446
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM446 (AFM446Q) /CSM/AF/AFM4-B/AFM446Q.Seq.d/
XXXXXXXXXXCCATTAGATGCAAGAGGTGAAGTTGATGAATGTGCATCATTTAAATGTGG
TGGTCGTTGGTTAGTTGATGGCGAACCAGTTCAATTTCCACAACCCATTTGGTAGAAGTT
TATATCCAGAGGAAACCTATGTAAATGAAATTGATGAAAAAACAGGTGCATCCTTGAAAT
TAACTTTATTAAATCCAAAAGGAAGAATATGGGCAATGGTTGCCGGAGGTGGTGCCTCTG
TTATCTATGCTGACACTGTTGCTGATTTAGGTTTTGGTAATGAGCTTGGAAATTATGGTG
AATATTCCGGTGATCCAAATGAAGAGGATACTCATAAATATGCATGCACTTTAATTTCAT
TGGCAACCAGAAATCCTGATTCTAGACCAAGAGCATTATTAATTGGTGGTGGTATTGCTA
ATTTTACTGATGTGGCTGCCACTTTCAAAGGTATCATTAGAGCAATTAAAGAGTATCATG
ATGATATCATTAAATCAAATCTTTCCATTTTCGTTAGAAGAGGTGGTCCAAATTATCAAT
CGGGTTTACAACATATGAGAGAAATTGGTCATAAATTACATATCCCAATCAAAGTTTTCG
GTCCTGAAGTTAATATGACAAGTATTGTTGCAATGGCAATCCAACATATTAATGTACCTA
TTGTTAATCCTTTAAAACCACAAACAAATAATTTTTCACCAACTTTAAANGTGTTCATTA
AAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence
---h*mqevklmnvhhlnvvvvg*LMANQFNFHNPFGRSLYPEETYVNEIDEKTGASLKL
TLLNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKYACTLISL
ATRNPDSRPRALLIGGGIANFTDVAATFKGIIRAIKEYHDDIIKSNLSIFVRRGGPNYQS
GLQHMREIGHKLHIPIKVFGPEVNMTSIVAMAIQHINVPIVNPLKPQTNNFSPTLXVFIK


Translated Amino Acid sequence (All Frames)
Frame A:
---h*mqevklmnvhhlnvvvvg*LMANQFNFHNPFGRSLYPEETYVNEIDEKTGASLKL
TLLNPKGRIWAMVAGGGASVIYADTVADLGFGNELGNYGEYSGDPNEEDTHKYACTLISL
ATRNPDSRPRALLIGGGIANFTDVAATFKGIIRAIKEYHDDIIKSNLSIFVRRGGPNYQS
GLQHMREIGHKLHIPIKVFGPEVNMTSIVAMAIQHINVPIVNPLKPQTNNFSPTLXVFIK


Frame B:
---irckr*s**mcii*mwwslvs*wrtssistthlvevyiqrkpm*mklmkkqvhp*n*
ly*iqkeeygqwlpevvpllsmltllli*vlvmsleimvnipviqmkrilinmhal*fhw
qpeilildqehy*lvvvllillmwlplskvsleqlksimmislnqifpfsleevvqiinr
vyni*eklvinyisqskfsvlkli*qvllqwqsnilmylllil*nhkqiifhql*xcslk


Frame C:
---ldargevdecasfkcggrwlvdgepvqfpqpiw*kfisrgnlck*n**knrcilein
fikskrknmgngcrrwclcylc*hcc*frfw**awklw*ifr*sk*rgys*icmhfnfig
nqks*f*tksiinwwwyc*fy*cgchfqryh*sn*rvs**yh*iksfhfr*krwsklsig
fttyernws*itypnqsfrs*s*ydkyccngnpty*ctyc*sfkttnk*fftnfkxvh*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM446 (AFM446Q) /CSM/AF/AFM4-B/AFM446Q.Seq.d/ 1409 0.0
VFF648 (VFF648Q) /CSM/VF/VFF6-B/VFF648Q.Seq.d/ 1380 0.0
VFF576 (VFF576Q) /CSM/VF/VFF5-D/VFF576Q.Seq.d/ 1372 0.0
CFF880 (CFF880Q) /CSM/CF/CFF8-D/CFF880Q.Seq.d/ 1372 0.0
AFA176 (AFA176Q) /CSM/AF/AFA1-D/AFA176Q.Seq.d/ 1318 0.0
VFF631 (VFF631Q) /CSM/VF/VFF6-B/VFF631Q.Seq.d/ 1314 0.0
SFF560 (SFF560Q) /CSM/SF/SFF5-C/SFF560Q.Seq.d/ 1243 0.0
VSB813 (VSB813Q) /CSM/VS/VSB8-A/VSB813Q.Seq.d/ 1181 0.0
CFI528 (CFI528Q) /CSM/CF/CFI5-B/CFI528Q.Seq.d/ 1181 0.0
SSC786 (SSC786Q) /CSM/SS/SSC7-D/SSC786Q.Seq.d/ 1096 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ346882) Dictyostelium discoideum cDNA clone:dda25l12, 3' ... 1409 0.0 1
(BJ428677) Dictyostelium discoideum cDNA clone:ddv12g19, 3' ... 1199 0.0 3
(BJ428571) Dictyostelium discoideum cDNA clone:ddv12o12, 3' ... 1199 0.0 3
(BJ372519) Dictyostelium discoideum cDNA clone:ddc12p20, 3' ... 1199 0.0 3
(BJ428557) Dictyostelium discoideum cDNA clone:ddv12m08, 3' ... 1183 0.0 3
(AU262263) Dictyostelium discoideum vegetative cDNA clone:VS... 1142 0.0 2
(BJ343049) Dictyostelium discoideum cDNA clone:dda1g19, 3' e... 1118 0.0 3
(C84106) Dictyostelium discoideum slug cDNA, clone SSC786. 1086 0.0 1
(BJ398473) Dictyostelium discoideum cDNA clone:dds12g15, 3' ... 1080 0.0 2
(BJ375333) Dictyostelium discoideum cDNA clone:ddc18g07, 3' ... 1053 0.0 3
dna update 2009. 4.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB036847_1(AB036847|pid:none) Ciona intestinalis Ci-ACL mRNA for... 245 3e-66
AK062236_1(AK062236|pid:none) Oryza sativa Japonica Group cDNA c... 239 1e-64
BT070808_1(BT070808|pid:none) Picea sitchensis clone WS02750_O19... 240 1e-64
BT041953_1(BT041953|pid:none) Zea mays full-length cDNA clone ZM... 240 1e-64
AJ344108_1(AJ344108|pid:none) Lupinus albus mRNA for ATP citrate... 240 2e-64
AM468006_2(AM468006|pid:none) Vitis vinifera contig VV78X180138.... 239 2e-64
AC003970_9(AC003970|pid:none) Arabidopsis thaliana chromosome I ... 237 7e-64
EU962919_1(EU962919|pid:none) Zea mays clone 246539 ATP-citrate ... 238 1e-63
AC009398_11(AC009398|pid:none) Genomic sequence for Arabidopsis ... 236 2e-63
AC002292_32(AC002292|pid:none) Arabidopsis thaliana BAC F8A5, co... 234 3e-63
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM446 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM446Z
3' end seq.
>AFM446Z.Seq
XXXXXXXXXXCCATTAGATGCAAGAGGTGAAGTTGATGAATGTGCATCATTTAAATGTGG
TGGTCGTTGGTTAGTTGATGGCGAACCAGTTCAATTTCCACAACCCATTTGGTAGAAGTT
TATATCCAGAGGAAACCTATGTAAATGAAATTGATGAAAAAACAGGTGCATCCTTGAAAT
TAACTTTATTAAATCCAAAAGGAAGAATATGGGCAATGGTTGCCGGAGGTGGTGCCTCTG
TTATCTATGCTGACACTGTTGCTGATTTAGGTTTTGGTAATGAGCTTGGAAATTATGGTG
AATATTCCGGTGATCCAAATGAAGAGGATACTCATAAATATGCATGCACTTTAATTTCAT
TGGCAACCAGAAATCCTGATTCTAGACCAAGAGCATTATTAATTGGTGGTGGTATTGCTA
ATTTTACTGATGTGGCTGCCACTTTCAAAGGTATCATTAGAGCAATTAAAGAGTATCATG
ATGATATCATTAAATCAAATCTTTCCATTTTCGTTAGAAGAGGTGGTCCAAATTATCAAT
CGGGTTTACAACATATGAGAGAAATTGGTCATAAATTACATATCCCAATCAAAGTTTTCG
GTCCTGAAGTTAATATGACAAGTATTGTTGCAATGGCAATCCAACATATTAATGTACCTA
TTGTTAATCCTTTAAAACCACAAACAAATAATTTTTCACCAACTTTAAANGTGTTCATTA
AAAA
Length of 3' end seq. 724
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -