VFF146 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFF146
Library	VF (Link to library)
Clone ID	VFF146 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15759-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFF1-B/VFF146Q.Seq.d/
Representative seq. ID	VFF146E (Link to Original site)
Representative DNA sequence	>VFF146 (VFF146Q) /CSM/VF/VFF1-B/VFF146Q.Seq.d/ TAAGAAAGAGTACAAGTAGTGATCTATTGATTAAACCACCTGTTGAATCACCACCATTAA CTCCTGTTGGACAAGATGATGAAGGAGAACAACAACAACAACAACAACAACAAAAACAAT CTTCACCATCTACACCATCAAATGATACTGATACTGAGACTACAGCAGCAGCAGTAACAA CAACCACAACTACAACAACCACCACCACTACCTCAACTACAACCACTACAACAGAGACTG TTTTACAGGCTAATCAATTAGAGATTAAATATGGTGGTGAAACAATTGCAGTAGTCGATG ACTCTGGCACAACACCAAGAGACTATAGAAGATCTAGAAGTATCAGTTGTGAGATTATAC CAAAGATAAATGGTGTAATTACAACCTCTCCACAACGAGTAACAACAACAACAACAACTA CCACACCATCAACAGGTGGTGTTGTCGTTGCTGATGAAGAATCAGACTCTTCAGAGGAAG AATCAGATTCATCAGAGGAAGAATCAGATGAATATACCGATGAAGAATCAGAGACTGAAT TACAAGTAGTTTCCAATGCCACACCAAGAAGATCAGATGATTTTACACCAACCATAGTTG AATCACCACCATTAACATCAGTTAATAGTAATGATAATACTTCTTCTGGTACCGTAGTTG CTCCAATTGACTTGAATAGCAGTACTGGTGGTAATACAGGTTCACAACAACCACCACAAC CATCATCACAACAACAAAAACCAGATCAAGCATCTGAAAATACCGCTGTTGCTGCCTCTT CAATTAGTGCCACAACAAATGTTACTTCAGCTGCTTCCACAACAACCGTTGCTCCAGATT CCATCATCAACACTAAAGATGTTACTGTTGTAAGCTCTACATTAACCACTACAACTAGTG CCACTTCATCTACTACCAGTGCTACAACTCAATCAATACCAGCTCCACCATCACCATCAC AACAACGTGCTGCTCAATCAATTTCAACCTCTTCAGTAACACCTGCAGCAATTACAAAAC CAACTAAAGATGCCAAAGATAAGAAAGATCCAGCAAAGAAATCAATTGGTGCCACTTTAA CAAGAACAGTAACAAAAACATTCATTAGAGATTCAAAAGAGAATAATAAAGTTCCAACTG GAACTTCACCACCTGTTTCATCATCAACTTCAATTTCATCCTCAACTGGTATTAAAAAAG ATAAAGTAAAGCTTTCAAAAGAAGAGAAAGATCGTATTAAAAAAGAGAAATCTGCAAAGA AAAGNAAAGNAAAAAGNANAAAAGAAC
sequence update	2001. 6. 9
Translated Amino Acid sequence	RKSTSSDLLIKPPVESPPLTPVGQDDEGEQQQQQQQQKQSSPSTPSNDTDTETTAAAVTT TTTTTTTTTTSTTTTTTETVLQANQLEIKYGGETIAVVDDSGTTPRDYRRSRSISCEIIP KINGVITTSPQRVTTTTTTTTPSTGGVVVADEESDSSEEESDSSEEESDEYTDEESETEL QVVSNATPRRSDDFTPTIVESPPLTSVNSNDNTSSGTVVAPIDLNSSTGGNTGSQQPPQP SSQQQKPDQASENTAVAASSISATTNVTSAASTTTVAPDSIINTKDVTVVSSTLTTTTSA TSSTTSATTQSIPAPPSPSQQRAAQSISTSSVTPAAITKPTKDAKDKKDPAKKSIGATLT RTVTKTFIRDSKENNKVPTGTSPPVSSSTSISSSTGIKKDKVKLSKEEKDRIKKEKSAKK XKXKXXKE
Translated Amino Acid sequence (All Frames)	Frame A: ervqvviylnhllnhhhllldkmmkennnnnnnnknnlhhlhhqmililrlqqqqq qpqlqqppplpqlqplqqrlfyrlinrlnmvvkqlqsmtlaqhqetiedlevsvvrly qrmvlqplhneqqqqqlphhqqvvlsllmknqtlqrknqihqrknqmnipmknqrln ykfpmphqedqmilhqplnhhhhqlivmiilllvpllqltiavlvviqvhnnhhn hhhnnknqikhlkiplllplqlvpqqmllqllpqqpllqipsstlkmlllalhplqlv plhllpvlqlnqyqlhhhhhnnvllnqfqplqhlqqlqnqlkmpkirkiqqrnqlvpl qeqqkhsleiqkriikfqlelhhlfhhqlqfhpqlvlkkiksfqkkrkivlkkrnlqr kxkxkxxkn Frame B: kkeyk*sidttcittinscwtrrrttttttttktiftiytikyydyssssnn nhnynnhhhylnynhynrdcftgsirdiwwnncssrlwhntkrlkikyqldyt kdkwcnynlsttsnnnnnnyhtinrwccrcrirlfrgrirfirgririyrrirdi tssfqchtkkirfytnhsittinis****yffwyrscsnleqywwyrftttttt iitttktrssikyrccclfnchnkcyfscfhnnrcsrfhhqhrcyccklyinhync hfiyyqcynsintsstititttccsinfnlfsntcsnyktnrcqrersskeinwchfn knsnknihrfkressnwnfttcfiinfnfilnwykrskafkrrersykreicke kxxkkxkr Frame C: RKSTSSDLLIKPPVESPPLTPVGQDDEGEQQQQQQQQKQSSPSTPSNDTDTETTAAAVTT TTTTTTTTTTSTTTTTTETVLQANQLEIKYGGETIAVVDDSGTTPRDYRRSRSISCEIIP KINGVITTSPQRVTTTTTTTTPSTGGVVVADEESDSSEEESDSSEEESDEYTDEESETEL QVVSNATPRRSDDFTPTIVESPPLTSVNSNDNTSSGTVVAPIDLNSSTGGNTGSQQPPQP SSQQQKPDQASENTAVAASSISATTNVTSAASTTTVAPDSIINTKDVTVVSSTLTTTTSA TSSTTSATTQSIPAPPSPSQQRAAQSISTSSVTPAAITKPTKDAKDKKDPAKKSIGATLT RTVTKTFIRDSKENNKVPTGTSPPVSSSTSISSSTGIKKDKVKLSKEEKDRIKKEKSAKK XKXKXXKE
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFF146 (VFF146Q) /CSM/VF/VFF1-B/VFF146Q.Seq.d/ 1562 0.0 SFK785 (SFK785Q) /CSM/SF/SFK7-D/SFK785Q.Seq.d/ 1548 0.0 VFI105 (VFI105Q) /CSM/VF/VFI1-A/VFI105Q.Seq.d/ 1509 0.0 SFJ832 (SFJ832Q) /CSM/SF/SFJ8-B/SFJ832Q.Seq.d/ 1185 0.0 CHQ586 (CHQ586Q) /CSM/CH/CHQ5-D/CHQ586Q.Seq.d/ 971 0.0 CHH117 (CHH117Q) /CSM/CH/CHH1-A/CHH117Q.Seq.d/ 908 0.0 SLI818 (SLI818Q) /CSM/SL/SLI8-A/SLI818Q.Seq.d/ 846 0.0 VHL790 (VHL790Q) /CSM/VH/VHL7-D/VHL790Q.Seq.d/ 827 0.0 SHE870 (SHE870Q) /CSM/SH/SHE8-C/SHE870Q.Seq.d/ 791 0.0 CHQ731 (CHQ731Q) /CSM/CH/CHQ7-B/CHQ731Q.Seq.d/ 557 e-157
own update	2002.12.17
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC132694\|AC132694.3 Rattus norvegicus clone CH230-490C22, WORKING DRAFT SEQUENCE. 56 9e-07 3 AC098898\|AC098898.7 Rattus norvegicus clone CH230-37I16, WORKING DRAFT SEQUENCE, 2 unordered pieces. 58 1e-06 3 AC128004\|AC128004.3 Rattus norvegicus clone CH230-262L8, * SEQUENCING IN PROGRESS *, 3 unordered pieces. 56 1e-06 6 AL275569\|AL275569.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone 083P16 of library G from Tetraodon nigroviridis. 66 1e-06 2 B67199\|B67199.1 CpG0015B CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence. 50 1e-06 3 AC115598\|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 56 1e-05 10 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 48 1e-05 11 AL279292\|AL279292.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 090B13 of library G from Tetraodon nigroviridis. 46 2e-05 2 AC103488\|AC103488.8 Rattus norvegicus clone CH230-17L14, WORKING DRAFT SEQUENCE, 3 unordered pieces. 60 7e-05 1 CB700752\|CB700752.1 AMGNNUC:SRPB2-00159-F10-A srpb2 (10220) Rattus norvegicus cDNA clone srpb2-00159-f10 5', mRNA sequence. 50 8e-05 2
dna update	2003. 9.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value T34369(T34369)hypothetical protein T19D12.1 - Caenorhabditis ele... 37 2.0
protein update	2009. 3. 8
PSORT	psg: 0.72 gvh: 0.33 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00 nuc: 0.06 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: mitochondrial 4.0 %: vacuolar 4.0 %: peroxisomal >> prediction for VFF146 is nuc
5' end seq. ID	VFF146F
5' end seq.	>VFF146F.Seq TAAGAAAGAGTACAAGTAGTGATCTATTGATTAAACCACCTGTTGAATCACCACCATTAA CTCCTGTTGGACAAGATGATGAAGGAGAACAACAACAACAACAACAACAACAAAAACAAT CTTCACCATCTACACCATCAAATGATACTGATACTGAGACTACAGCAGCAGCAGTAACAA CAACCACAACTACAACAACCACCACCACTACCTCAACTACAACCACTACAACAGAGACTG TTTTACAGGCTAATCAATTAGAGATTAAATATGGTGGTGAAACAATTGCAGTAGTCGATG ACTCTGGCACAACACCAAGAGACTATAGAAGATCTAGAAGTATCAGTTGTGAGATTATAC CAAAGATAAATGGTGTAATTACAACCTCTCCACAACGAGTAACAACAACAACAACAACTA CCACACCATCAACAGGTGGTGTTGTCGTTGCTGATGAAGAATCAGACTCTTCAGAGGAAG AATCAGATTCATCAGAGGAAGAATCAGATGAATATACCGATGAAGAATCAGAGACTGAAT TACAAGTAGTTTCCAATGCCACACCAAGAAGATCAGATGATTTTACACCAACCATAGTTG AATCACCACCATTAACATCAGTTAATAGTAATGATAATACTTCTTCTGGTACCGTAGTTG CTCCAATTGACTTGAATAGCAGTACTGGTGG----------
Length of 5' end seq.	691
3' end seq. ID	VFF146Z
3' end seq.	>VFF146Z.Seq ----------TTACAAGTAGTTTCCAATGCCACACCAAGAAGATCAGATGATTTTACACC AACCATAGTTGAATCACCACCATTAACATCAGTTAATAGTAATGATAATACTTCTTCTGG TACCGTAGTTGCTCCAATTGACTTGAATAGCAGTACTGGTGGTAATACAGGTTCACAACA ACCACCACAACCATCATCACAACAACAAAAACCAGATCAAGCATCTGAAAATACCGCTGT TGCTGCCTCTTCAATTAGTGCCACAACAAATGTTACTTCAGCTGCTTCCACAACAACCGT TGCTCCAGATTCCATCATCAACACTAAAGATGTTACTGTTGTAAGCTCTACATTAACCAC TACAACTAGTGCCACTTCATCTACTACCAGTGCTACAACTCAATCAATACCAGCTCCACC ATCACCATCACAACAACGTGCTGCTCAATCAATTTCAACCTCTTCAGTAACACCTGCAGC AATTACAAAACCAACTAAAGATGCCAAAGATAAGAAAGATCCAGCAAAGAAATCAATTGG TGCCACTTTAACAAGAACAGTAACAAAAACATTCATTAGAGATTCAAAAGAGAATAATAA AGTTCCAACTGGAACTTCACCACCTGTTTCATCATCAACTTCAATTTCATCCTCAACTGG TATTAAAAAAGATAAAGTAAAGCTTTCAAAAGAAGAGAAAGATCGTATTAAAAAAGAGAA ATCTGCAAAGAAAAGNAAAGNAAAAAGNANAAAAGAAC
Length of 3' end seq.	748
Connected seq. ID	VFF146P
Connected seq.	>VFF146P.Seq TAAGAAAGAGTACAAGTAGTGATCTATTGATTAAACCACCTGTTGAATCACCACCATTAA CTCCTGTTGGACAAGATGATGAAGGAGAACAACAACAACAACAACAACAACAAAAACAAT CTTCACCATCTACACCATCAAATGATACTGATACTGAGACTACAGCAGCAGCAGTAACAA CAACCACAACTACAACAACCACCACCACTACCTCAACTACAACCACTACAACAGAGACTG TTTTACAGGCTAATCAATTAGAGATTAAATATGGTGGTGAAACAATTGCAGTAGTCGATG ACTCTGGCACAACACCAAGAGACTATAGAAGATCTAGAAGTATCAGTTGTGAGATTATAC CAAAGATAAATGGTGTAATTACAACCTCTCCACAACGAGTAACAACAACAACAACAACTA CCACACCATCAACAGGTGGTGTTGTCGTTGCTGATGAAGAATCAGACTCTTCAGAGGAAG AATCAGATTCATCAGAGGAAGAATCAGATGAATATACCGATGAAGAATCAGAGACTGAAT TACAAGTAGTTTCCAATGCCACACCAAGAAGATCAGATGATTTTACACCAACCATAGTTG AATCACCACCATTAACATCAGTTAATAGTAATGATAATACTTCTTCTGGTACCGTAGTTG CTCCAATTGACTTGAATAGCAGTACTGGTGG----------TTACAAGTAGTTTCCAATG CCACACCAAGAAGATCAGATGATTTTACACCAACCATAGTTGAATCACCACCATTAACAT CAGTTAATAGTAATGATAATACTTCTTCTGGTACCGTAGTTGCTCCAATTGACTTGAATA GCAGTACTGGTGGTAATACAGGTTCACAACAACCACCACAACCATCATCACAACAACAAA AACCAGATCAAGCATCTGAAAATACCGCTGTTGCTGCCTCTTCAATTAGTGCCACAACAA ATGTTACTTCAGCTGCTTCCACAACAACCGTTGCTCCAGATTCCATCATCAACACTAAAG ATGTTACTGTTGTAAGCTCTACATTAACCACTACAACTAGTGCCACTTCATCTACTACCA GTGCTACAACTCAATCAATACCAGCTCCACCATCACCATCACAACAACGTGCTGCTCAAT CAATTTCAACCTCTTCAGTAACACCTGCAGCAATTACAAAACCAACTAAAGATGCCAAAG ATAAGAAAGATCCAGCAAAGAAATCAATTGGTGCCACTTTAACAAGAACAGTAACAAAAA CATTCATTAGAGATTCAAAAGAGAATAATAAAGTTCCAACTGGAACTTCACCACCTGTTT CATCATCAACTTCAATTTCATCCTCAACTGGTATTAAAAAAGATAAAGTAAAGCTTTCAA AAGAAGAGAAAGATCGTATTAAAAAAGAGAAATCTGCAAAGAAAAGNAAAGNAAAAAGNA NAAAAGAAC
Length of connected seq.	1439
Full length Seq ID	VFF146E
Full length Seq.	>VFF146E.Seq TAAGAAAGAGTACAAGTAGTGATCTATTGATTAAACCACCTGTTGAATCACCACCATTAA CTCCTGTTGGACAAGATGATGAAGGAGAACAACAACAACAACAACAACAACAAAAACAAT CTTCACCATCTACACCATCAAATGATACTGATACTGAGACTACAGCAGCAGCAGTAACAA CAACCACAACTACAACAACCACCACCACTACCTCAACTACAACCACTACAACAGAGACTG TTTTACAGGCTAATCAATTAGAGATTAAATATGGTGGTGAAACAATTGCAGTAGTCGATG ACTCTGGCACAACACCAAGAGACTATAGAAGATCTAGAAGTATCAGTTGTGAGATTATAC CAAAGATAAATGGTGTAATTACAACCTCTCCACAACGAGTAACAACAACAACAACAACTA CCACACCATCAACAGGTGGTGTTGTCGTTGCTGATGAAGAATCAGACTCTTCAGAGGAAG AATCAGATTCATCAGAGGAAGAATCAGATGAATATACCGATGAAGAATCAGAGACTGAAT TACAAGTAGTTTCCAATGCCACACCAAGAAGATCAGATGATTTTACACCAACCATAGTTG AATCACCACCATTAACATCAGTTAATAGTAATGATAATACTTCTTCTGGTACCGTAGTTG CTCCAATTGACTTGAATAGCAGTACTGGTGGTAATACAGGTTCACAACAACCACCACAAC CATCATCACAACAACAAAAACCAGATCAAGCATCTGAAAATACCGCTGTTGCTGCCTCTT CAATTAGTGCCACAACAAATGTTACTTCAGCTGCTTCCACAACAACCGTTGCTCCAGATT CCATCATCAACACTAAAGATGTTACTGTTGTAAGCTCTACATTAACCACTACAACTAGTG CCACTTCATCTACTACCAGTGCTACAACTCAATCAATACCAGCTCCACCATCACCATCAC AACAACGTGCTGCTCAATCAATTTCAACCTCTTCAGTAACACCTGCAGCAATTACAAAAC CAACTAAAGATGCCAAAGATAAGAAAGATCCAGCAAAGAAATCAATTGGTGCCACTTTAA CAAGAACAGTAACAAAAACATTCATTAGAGATTCAAAAGAGAATAATAAAGTTCCAACTG GAACTTCACCACCTGTTTCATCATCAACTTCAATTTCATCCTCAACTGGTATTAAAAAAG ATAAAGTAAAGCTTTCAAAAGAAGAGAAAGATCGTATTAAAAAAGAGAAATCTGCAAAGA AAAGNAAAGNAAAAAGNANAAAAGAAC
Length of full length seq.	1287

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas