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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFF139
Library VF
(Link to library)
Clone ID VFF139
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16399-1
Original site URL
Representative seq. ID VFF139P
(Link to Original site)
Representative DNA sequence 
>VFF139 (VFF139Q) /CSM/VF/VFF1-B/VFF139Q.Seq.d/
TTTTTTTTAAATCACATGTTCAAAATTTTTTTTAAATTACCCGTCCAAACTTCATTAGTG
TCAAAATCAAGATCAATTCAATTTAATTATTCAACAAAAAGTAATATTAGAAATATGGAA
CAATACTTACCACAAGCTAAGGAATTTATTTCATTTATTGATAAATCACCATCACCATAT
CATGCAGTTCAATACTTTTCAGAGATTTTAAAGAGTAAAGGTTTCATTCATTTATCAGAG
AAACAAATGTGGGATATTCAACCAAATAAAAAATATTTCTTTACTCGTAATCAATCATGT
ATTTCTGCTTTTGCAGTTGGTGGTAATATAAACCAGGTAATGGTTTTAATATTGCAGCAG
CACATACTGATAGTCCAAATTTTAAAGTTAGACCAGTATCAAAAGTTGAATCAGTTGGAT
ATCAACAAGTTGGTGTTGAAACATATGGTGGTGGATTATGGTATACATGGTTTGATCGTG
ATTTAACCCGTTGCAGGTAGAGTCATTGTTAAATCAGGTGATGGXXXXXXXXXXATGTCA
AAGAATCAACATTGGCACAAGAGGAGAATGTATTGAATGTGATATTATTCGATAATGAAG
AGGTTGGCTCAAGTTCACCACAAGGTGCATGTGCACCATTGATCAATGATACCATTAGTC
GTGTCAATAGCTCAATGTTTGCATCCACTTGTAAACCACATGAATTAAACAATTTCATTG
ATTTAACTTTAAGAAATAGTTTCTTAATCTCTGCTGATATGGCACATGCTACTCATCCAA
ATTACACAGCAAATCATGAACCACTTCATAGACCAGCTCTTAATAAAGGTCCAGTAATCA
AATATAATGCAAATTTACGTTATGCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATA
TCTGTAAAAAGAATGGTATCCCAATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTG
GTTCAACAATTGGTCCAATCATTTCTGGTACTTATGGTATTAGAACTGTAGATATTGGTA
ATCCACAATTATCAATGCATTCAATTCGTGAAACTTGTGGTGTTGCTGATATCACTCATG
GTATTAATTTAATTCAAAAATATTTTTAACAATTTACAAAATTAGATATTATTAAATCNA
TTTAGAATAAAAATTAAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ff*itcskfflnypsklh*cqnqdqfnliiqqkvileiwnntyhklrnlfhllinhhhhi
mqfntfqrf*rvkvsfiyqrnkcgifnqiknisllvinhvflllqlvvi*tr*wf*ycss
ty**skf*s*tsiks*iswistswc*niwwwimvymv*s*FNPLQVESLLNQVM---

---VKESTLAQEENVLNVILFDNEEVGSSSPQGACAPLINDTISRVNSSMFASTCKPHEL
NNFIDLTLRNSFLISADMAHATHPNYTANHEPLHRPALNKGPVIKYNANLRYASNGPTSF
VILDICKKNGIPIQEFLVKNDSPCGSTIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVA
DITHGINLIQKYF*qftkldiiksi*nkn*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
fflnhmfkiffklpvqtslvsksrsiqfnystksnirnmeqylpqakefisfidkspspy
havqyfseilkskgfihlsekqmwdiqpnkkyfftrnqscisafavggninqvmvlilqq
hilivqilkldqyqklnqldinklvlkhmvvdygihglivi*pvagrvivksgd---

---msknqhwhkrrmy*m*yysimkrlaqvhhkvhvhh*smiplvvsiaqclhplvnhmn
*tisli*l*eivs*slliwhmlliqitqqimnhfidqllikvq*snimqiyvmlqmvqlv
llswisvkrmvsqfknssskmihhvvqqlvqsflvlmvlel*ilvihnyqciqfvklvvl
lislmvli*fknifnnlqn*illnxfrikikkk

Frame B:
ff*itcskfflnypsklh*cqnqdqfnliiqqkvileiwnntyhklrnlfhllinhhhhi
mqfntfqrf*rvkvsfiyqrnkcgifnqiknisllvinhvflllqlvvi*tr*wf*ycss
ty**skf*s*tsiks*iswistswc*niwwwimvymv*s*FNPLQVESLLNQVM---

---cqrinigtrgeciecdiir**rgwlkfttrcmctidq*yh*scq*lnvcihl*tt*i
kqfh*fnfkk*flnlc*ygtcyssklhsks*tts*tss**rssnqi*ckftlcfkwsn*f
cylgyl*kewypnsriprqk*ftmwfnnwsnhfwylwy*ncryw*stiinafns*nlwcc
*yhswy*fnskifltiykiryy*ixle*klkk

Frame C:
ffkshvqnff*itrpnfisvkikinsi*lfnkk*y*kygtiltts*giyfiy**ititis
cssilfrdfke*rfhsfiretnvgystk*kiflys*simyfcfcsww*ykpgngfniaaa
htdspnfkvrpvskvesvgyqqvgvetyggglwytwfdrdltrcr*shc*ir*w---

---VKESTLAQEENVLNVILFDNEEVGSSSPQGACAPLINDTISRVNSSMFASTCKPHEL
NNFIDLTLRNSFLISADMAHATHPNYTANHEPLHRPALNKGPVIKYNANLRYASNGPTSF
VILDICKKNGIPIQEFLVKNDSPCGSTIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVA
DITHGINLIQKYF*qftkldiiksi*nkn*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFF139 (VFF139Q) /CSM/VF/VFF1-B/VFF139Q.Seq.d/                       2161   0.0
SFB870 (SFB870Q) /CSM/SF/SFB8-C/SFB870Q.Seq.d/                       1211   0.0
AFG673 (AFG673Q) /CSM/AF/AFG6-D/AFG673Q.Seq.d/                       1211   0.0
SFH114 (SFH114Q) /CSM/SF/SFH1-A/SFH114Q.Seq.d/                       1209   0.0
SFD324 (SFD324Q) /CSM/SF/SFD3-A/SFD324Q.Seq.d/                       1209   0.0
CFJ277 (CFJ277Q) /CSM/CF/CFJ2-D/CFJ277Q.Seq.d/                       1209   0.0
CFH794 (CFH794Q) /CSM/CF/CFH7-D/CFH794Q.Seq.d/                       1209   0.0
AFM822 (AFM822Q) /CSM/AF/AFM8-A/AFM822Q.Seq.d/                       1209   0.0
AFH743 (AFH743Q) /CSM/AF/AFH7-B/AFH743Q.Seq.d/                       1209   0.0
AFH309 (AFH309Q) /CSM/AF/AFH3-A/AFH309Q.Seq.d/                       1209   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BG525546|BG525546.1 51-5 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    80  7e-11  1
AY133535|AY133535.1 Arabidopsis thaliana At5g60160/f15l12_20 mRNA, complete cds.    58  8e-10  3
AY085075|AY085075.1 Arabidopsis thaliana clone 126533 mRNA, complete sequence.    58  9e-10  3
AY045584|AY045584.1 Arabidopsis thaliana AT5g60160/f15l12_20 mRNA, complete cds.    58  1e-09  3
AB026632|AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12.    58  6e-07  5
BU007153|BU007153.1 QGH13J06.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGH13J06, mRNA sequence.    50  7e-07  2
CA523816|CA523816.1 KS12029A03 KS12 Capsicum annuum cDNA, mRNA sequence.    66  1e-06  1
CB259770|CB259770.1 23-E011176-013-009-M05-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA clone MPIZp770M059Q 5-PRIME, mRNA sequence.    58  8e-06  2
AV823138|AV823138.1 Arabidopsis thaliana cDNA clone:RAFL05-15-M22, 5'-end.    58  1e-05  2
BU001999|BU001999.1 QGG2f07.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG2f07, mRNA sequence.    58  1e-05  2
dna update 2003. 9.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M70) RecName: Full=Aspartyl aminopeptidase;          EC=3.4....   396   e-109
AC159446_25(AC159446|pid:none) Trypanosoma brucei chromosome 3 c...   202   1e-50
EU954490_1(EU954490|pid:none) Zea mays clone 1468685 unknown mRNA.    194   4e-48
BT062007_1(BT062007|pid:none) Zea mays full-length cDNA clone ZM...   194   4e-48
AB026632_4(AB026632|pid:none) Arabidopsis thaliana genomic DNA, ...   188   4e-46
AM494966_233(AM494966|pid:none) Leishmania braziliensis chromoso...   187   6e-46
AY085075_1(AY085075|pid:none) Arabidopsis thaliana clone 126533 ...   186   1e-45
CP000592_232(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...   185   3e-45
CR954212_224(CR954212|pid:none) Ostreococcus tauri strain OTTH05...   184   4e-45
AP007151_1241(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...   184   7e-45
protein update 2009. 6.19
PSORT 

 psg: 0.75  gvh: 0.49  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VFF139 is cyt
5' end seq. ID VFF139F
5' end seq. 
>VFF139F.Seq
TTTTTTTTAAATCACATGTTCAAAATTTTTTTTAAATTACCCGTCCAAACTTCATTAGTG
TCAAAATCAAGATCAATTCAATTTAATTATTCAACAAAAAGTAATATTAGAAATATGGAA
CAATACTTACCACAAGCTAAGGAATTTATTTCATTTATTGATAAATCACCATCACCATAT
CATGCAGTTCAATACTTTTCAGAGATTTTAAAGAGTAAAGGTTTCATTCATTTATCAGAG
AAACAAATGTGGGATATTCAACCAAATAAAAAATATTTCTTTACTCGTAATCAATCATGT
ATTTCTGCTTTTGCAGTTGGTGGTAATATAAACCAGGTAATGGTTTTAATATTGCAGCAG
CACATACTGATAGTCCAAATTTTAAAGTTAGACCAGTATCAAAAGTTGAATCAGTTGGAT
ATCAACAAGTTGGTGTTGAAACATATGGTGGTGGATTATGGTATACATGGTTTGATCGTG
ATTTAACCCGTTGCAGGTAGAGTCATTGTTAAATCAGGTGATGG----------
Length of 5' end seq. 524
3' end seq. ID VFF139Z
3' end seq. 
>VFF139Z.Seq
----------ATGTCAAAGAATCAACATTGGCACAAGAGGAGAATGTATTGAATGTGATA
TTATTCGATAATGAAGAGGTTGGCTCAAGTTCACCACAAGGTGCATGTGCACCATTGATC
AATGATACCATTAGTCGTGTCAATAGCTCAATGTTTGCATCCACTTGTAAACCACATGAA
TTAAACAATTTCATTGATTTAACTTTAAGAAATAGTTTCTTAATCTCTGCTGATATGGCA
CATGCTACTCATCCAAATTACACAGCAAATCATGAACCACTTCATAGACCAGCTCTTAAT
AAAGGTCCAGTAATCAAATATAATGCAAATTTACGTTATGCTTCAAATGGTCCAACTAGT
TTTGTTATCTTGGATATCTGTAAAAAGAATGGTATCCCAATTCAAGAATTCCTCGTCAAA
AATGATTCACCATGTGGTTCAACAATTGGTCCAATCATTTCTGGTACTTATGGTATTAGA
ACTGTAGATATTGGTAATCCACAATTATCAATGCATTCAATTCGTGAAACTTGTGGTGTT
GCTGATATCACTCATGGTATTAATTTAATTCAAAAATATTTTTAACAATTTACAAAATTA
GATATTATTAAATCNATTTAGAATAAAAATTAAAAAAAAA
Length of 3' end seq. 630
Connected seq. ID VFF139P
Connected seq. 
>VFF139P.Seq
TTTTTTTTAAATCACATGTTCAAAATTTTTTTTAAATTACCCGTCCAAACTTCATTAGTG
TCAAAATCAAGATCAATTCAATTTAATTATTCAACAAAAAGTAATATTAGAAATATGGAA
CAATACTTACCACAAGCTAAGGAATTTATTTCATTTATTGATAAATCACCATCACCATAT
CATGCAGTTCAATACTTTTCAGAGATTTTAAAGAGTAAAGGTTTCATTCATTTATCAGAG
AAACAAATGTGGGATATTCAACCAAATAAAAAATATTTCTTTACTCGTAATCAATCATGT
ATTTCTGCTTTTGCAGTTGGTGGTAATATAAACCAGGTAATGGTTTTAATATTGCAGCAG
CACATACTGATAGTCCAAATTTTAAAGTTAGACCAGTATCAAAAGTTGAATCAGTTGGAT
ATCAACAAGTTGGTGTTGAAACATATGGTGGTGGATTATGGTATACATGGTTTGATCGTG
ATTTAACCCGTTGCAGGTAGAGTCATTGTTAAATCAGGTGATGG----------ATGTCA
AAGAATCAACATTGGCACAAGAGGAGAATGTATTGAATGTGATATTATTCGATAATGAAG
AGGTTGGCTCAAGTTCACCACAAGGTGCATGTGCACCATTGATCAATGATACCATTAGTC
GTGTCAATAGCTCAATGTTTGCATCCACTTGTAAACCACATGAATTAAACAATTTCATTG
ATTTAACTTTAAGAAATAGTTTCTTAATCTCTGCTGATATGGCACATGCTACTCATCCAA
ATTACACAGCAAATCATGAACCACTTCATAGACCAGCTCTTAATAAAGGTCCAGTAATCA
AATATAATGCAAATTTACGTTATGCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATA
TCTGTAAAAAGAATGGTATCCCAATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTG
GTTCAACAATTGGTCCAATCATTTCTGGTACTTATGGTATTAGAACTGTAGATATTGGTA
ATCCACAATTATCAATGCATTCAATTCGTGAAACTTGTGGTGTTGCTGATATCACTCATG
GTATTAATTTAATTCAAAAATATTTTTAACAATTTACAAAATTAGATATTATTAAATCNA
TTTAGAATAAAAATTAAAAAAAAA
Length of connected seq. 1154
Full length Seq ID -
Full length Seq. -
Length of full length seq. -