VFF117 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFF117
Library	VF (Link to library)
Clone ID	VFF117 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16455-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFF1-A/VFF117Q.Seq.d/
Representative seq. ID	VFF117P (Link to Original site)
Representative DNA sequence	>VFF117 (VFF117Q) /CSM/VF/VFF1-A/VFF117Q.Seq.d/ ATTGTTATAATCAACTTTAAAGAAAGAATAAACAACCATGGGTAAAGAGAAAACTCACAT TAACATTGTCGTCATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAAT CTACAAATGTGGTGGTATCGATAAGAGAGTTATCGAAAAGTATGAAAAGGAAGCTTCTGA AATGGGTAAACAATCCTTCAAATACGCCTGGGTTATGGATAAATTAAAGGCTGAACGTGA AAGAGGTATCACCATCGATATTGCTTTATGGAAATTCGAAACCTCCAAATACTACTTCAC CATCATTGATGCCCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGTACCTCCCA AGCCGATTGTGCCGTCTTAGTCATTGCCTCCCCAACTGGTGAATTCGAAGCTGGTATCGC CAAAAACGGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAAT GATCGTTGCTATCAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGA CGAAATTGTCAAGGAAGTTTCATCTTTCATCAAAAAGATTGXXXXXXXXXXCCACACGAT AAACCATTACGTATTCCATTACAAGATGTCTACAAGATCGGTGGTATCGGTACTGTTCCA GTAGGTCGTGTCGAAACTGGTATCATTAAACCAGGTATGGTCGTCACCTTTGCCCCAGCT GGTCTCTCAACTGAAGTCAAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCGT CCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGT ATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAA GTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGT CACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACT GGTGCCGTCGTTGCCAAAGAGGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCT ATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCA TTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCA ACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAA AAGAAATAAATAAATAAATTTCTTAATAAATAGCATTT
sequence update	2001. 6. 1
Translated Amino Acid sequence	llstlkkeTTMGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASE MGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQ ADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYD EIVKEVSSFIKKI--- ---PHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHE QLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGY SPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVES FTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKKinkflnkh
Translated Amino Acid sequence (All Frames)	Frame A: iviinfkerinnhgrenshhcrhwsrrcwinhhwsfnlqmwwyresyrkvkgsf ngtilqirlgygikgtkryhhrycfmeirnlqillhhhcprsqrfhqeydywylp srlcrlshclpnwirswyrqkrsnstrspclhfrcqtndrcyqqdgkinqlltsplr rncqgsfifhqkd--- ---PHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHE QLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGY SPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVES FTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKKinkflnkh Frame B: llstlkkeTTMGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASE MGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQ ADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYD EIVKEVSSFIKKI--- ---htinhyvfhykmstrsvvsvlfqvvsklvslnqvwssplpqlvsqlksnqskcitn nsqkpvqvtmvstlktfqskklkevwslvtpktihhkklknsllklssstiqvksmlvt hqsivtlltlpvnslkssiklivvlvpslpkrvlppssrmvmplwsnphlvqcvlnp slnthhvvspseidkpspsvssnqpsrkpqvkpvirkvllphqkrnkinflinsi Frame C: cynqlrknkqpwvkrkltltlsslvtmlvnqpplvistnvvvsirelsksmkrkllk wvnnpsntpglwinrlnvkevspsillygnskppnttspslmpqvteissrillvppk pivpsslppqlvnsklvspktvklvntlslltlvsnksllstrwmknqptthkpvtt klsrkfhlsskrl--- ---trtitysitrclqdrwyrycssrscrnwyhtrygrhlcpswslnsqisrnasrt tprspsrqcrfqrkrfsqrnkrygrwlqkrsttrnkircssyrpqpsrsnpcwll tslrlshcshclihnrrsssywcrrcqrgycrrrlkewcrygrinpissnvcil hiptirsfrrqryetnrrrrchqinrqesprsr*ercccpikkeinkis**iaf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFF117 (VFF117Q) /CSM/VF/VFF1-A/VFF117Q.Seq.d/ 2430 0.0 VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/ 1310 0.0 VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/ 1310 0.0 VFN376 (VFN376Q) /CSM/VF/VFN3-D/VFN376Q.Seq.d/ 1310 0.0 VFN329 (VFN329Q) /CSM/VF/VFN3-B/VFN329Q.Seq.d/ 1310 0.0 VFN318 (VFN318Q) /CSM/VF/VFN3-A/VFN318Q.Seq.d/ 1310 0.0 VFN184 (VFN184Q) /CSM/VF/VFN1-D/VFN184Q.Seq.d/ 1310 0.0 VFN174 (VFN174Q) /CSM/VF/VFN1-D/VFN174Q.Seq.d/ 1310 0.0 VFM841 (VFM841Q) /CSM/VF/VFM8-B/VFM841Q.Seq.d/ 1310 0.0 VFM606 (VFM606Q) /CSM/VF/VFM6-A/VFM606Q.Seq.d/ 1310 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N X55973\|X55973.1 D. discoideum EF1-I gene for elongation factor 1 alpha. 1310 0.0 2 X55972\|X55972.1 D. discoideum EF1-II gene for elongation factor 1 alpha. 1255 0.0 2 AF016242\|AF016242.1 Dictyostelium discoideum protein synthesis elongation factor 1-alpha (tef2) gene, partial cds. 1082 0.0 3 M29935\|M29935.1 C.albicans elongation factor 1-alpha (TEF-2) gene, complete cds. 264 0.0 8 M29934\|M29934.1 C.albicans elongation factor 1-alpha (TEF-1) gene, complete cds. 192 0.0 9 AX109715\|AX109715.1 Sequence 448 from Patent WO0123604. 147 e-162 9 AX109714\|AX109714.1 Sequence 447 from Patent WO0123604. 147 e-161 9 AF402092\|AF402092.1 Pichia anomala strain NRRL Y-366 translation elongation factor 1-alpha gene, partial cds. 151 e-161 9 AX109679\|AX109679.1 Sequence 412 from Patent WO0123604. 161 e-150 8 AX109682\|AX109682.1 Sequence 415 from Patent WO0123604. 161 e-150 8
dna update	2003. 9.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value FJ807244_1(FJ807244\|pid:none) Reclinomonas americana elongation ... 317 e-169 FB784741_1(FB784741\|pid:none) Sequence 4014 from Patent WO200803... 308 e-166 EU976709_1(EU976709\|pid:none) Zea mays clone 988175 elongation f... 308 e-165 AB306940_1(AB306940\|pid:none) Echinococcus shiquicus ef1a gene f... 313 e-165 FJ807243_1(FJ807243\|pid:none) Peranema trichophorum strain CCAP ... 308 e-165 FJ807241_1(FJ807241\|pid:none) Jakoba libera elongation factor 1 ... 305 e-165 AB306938_1(AB306938\|pid:none) Echinococcus vogeli ef1a gene for ... 312 e-165 (Q41803) RecName: Full=Elongation factor 1-alpha; Short... 306 e-165 AF331849_1(AF331849\|pid:none) Saccharum hybrid cultivar CP65-357... 308 e-164 FB784751_1(FB784751\|pid:none) Sequence 4024 from Patent WO200803... 301 e-163
protein update	2009. 6.19
PSORT	psg: 0.84 gvh: 0.34 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: cytoplasmic 36.0 %: nuclear 12.0 %: cytoskeletal 8.0 %: vacuolar 4.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for VFF117 is cyt
5' end seq. ID	VFF117F
5' end seq.	>VFF117F.Seq ATTGTTATAATCAACTTTAAAGAAAGAATAAACAACCATGGGTAAAGAGAAAACTCACAT TAACATTGTCGTCATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAAT CTACAAATGTGGTGGTATCGATAAGAGAGTTATCGAAAAGTATGAAAAGGAAGCTTCTGA AATGGGTAAACAATCCTTCAAATACGCCTGGGTTATGGATAAATTAAAGGCTGAACGTGA AAGAGGTATCACCATCGATATTGCTTTATGGAAATTCGAAACCTCCAAATACTACTTCAC CATCATTGATGCCCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGTACCTCCCA AGCCGATTGTGCCGTCTTAGTCATTGCCTCCCCAACTGGTGAATTCGAAGCTGGTATCGC CAAAAACGGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAAT GATCGTTGCTATCAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGA CGAAATTGTCAAGGAAGTTTCATCTTTCATCAAAAAGATTG----------
Length of 5' end seq.	581
3' end seq. ID	VFF117Z
3' end seq.	>VFF117Z.Seq ----------CCACACGATAAACCATTACGTATTCCATTACAAGATGTCTACAAGATCGG TGGTATCGGTACTGTTCCAGTAGGTCGTGTCGAAACTGGTATCATTAAACCAGGTATGGT CGTCACCTTTGCCCCAGCTGGTCTCTCAACTGAAGTCAAATCAGTCGAAATGCATCACGA ACAACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGT CAAAGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAAC TGAAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTA CTCACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGA TAAAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAGGGTACTGCCGCCGTCGTCTT AAAGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATC CTTCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGC CGTCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGG TGCTGCTGCCCCATCAAAAAAGAAATAAATAAATAAATTTCTTAATAAATAGCATTT
Length of 3' end seq.	707
Connected seq. ID	VFF117P
Connected seq.	>VFF117P.Seq ATTGTTATAATCAACTTTAAAGAAAGAATAAACAACCATGGGTAAAGAGAAAACTCACAT TAACATTGTCGTCATTGGTCACGTAGATGCTGGTAAATCAACCACCACTGGTCATTTAAT CTACAAATGTGGTGGTATCGATAAGAGAGTTATCGAAAAGTATGAAAAGGAAGCTTCTGA AATGGGTAAACAATCCTTCAAATACGCCTGGGTTATGGATAAATTAAAGGCTGAACGTGA AAGAGGTATCACCATCGATATTGCTTTATGGAAATTCGAAACCTCCAAATACTACTTCAC CATCATTGATGCCCCAGGTCACAGAGATTTCATCAAGAATATGATTACTGGTACCTCCCA AGCCGATTGTGCCGTCTTAGTCATTGCCTCCCCAACTGGTGAATTCGAAGCTGGTATCGC CAAAAACGGTCAAACTCGTGAACACGCTCTCCTTGCTTACACTTTAGGTGTCAAACAAAT GATCGTTGCTATCAACAAGATGGATGAAAAATCAACCAACTACTCACAAGCCCGTTACGA CGAAATTGTCAAGGAAGTTTCATCTTTCATCAAAAAGATTG----------CCACACGAT AAACCATTACGTATTCCATTACAAGATGTCTACAAGATCGGTGGTATCGGTACTGTTCCA GTAGGTCGTGTCGAAACTGGTATCATTAAACCAGGTATGGTCGTCACCTTTGCCCCAGCT GGTCTCTCAACTGAAGTCAAATCAGTCGAAATGCATCACGAACAACTCCCAGAAGCCCGT CCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTCAAAGAAATTAAAAGAGGT ATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACTGAAAAATTCGTTGCTCAA GTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTACTCACCAGTCTTAGATTGT CACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGATAAAGTTGATCGTCGTACT GGTGCCGTCGTTGCCAAAGAGGGTACTGCCGCCGTCGTCTTAAAGAATGGTGATGCCGCT ATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCCTTCACTGAATACCCACCA TTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCCGTCGGTGTCATCAAATCA ACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTGCTGCTGCCCCATCAAAA AAGAAATAAATAAATAAATTTCTTAATAAATAGCATTT
Length of connected seq.	1288
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas