VFF110
Library VF
(Link to library)
Clone ID VFF110
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10843-1
Original site URL
Representative seq. ID VFF110P
(Link to Original site)
Representative DNA sequence
>VFF110 (VFF110Q) /CSM/VF/VFF1-A/VFF110Q.Seq.d/
ATTTTTTTTNAATATTTGTTTAACCATATAAAGTGAGAAAGACAAGTGTACATAAAAACT
TGATCTTTTTTATTTTATATCACACACATACATAATAAAAAACTATGGCAACTCAACAAC
AACAACAACAACAACAACAACAACAACAGCAAATTAAGGCTAGAAAAGATATACAAATTC
AACAAGCACAATCTGCTTCTGATATATTAGGACCACCAGAAATTTCAGAAACTGAAATTA
CAACAGAATCAATACTTGGTGATGGAAGTTTTGGTACTGTTTATAAAGGTCGTTGTAGAT
TAAAGGATGTAGCAGTAAAGGTTATGTTAAAACAAGTCGATCAAAAGACTTTAACTGATT
TCAGAAAGGAAGTTGCAATTATGAGTAAAATTTTTCATCCAAATATTGTACTTTTTTTAG
GTGCATGTACATCTACACCAGGTAAACTTATGATTTGTACAGAATTAATGAAAGGTAATC
TTGAATCATTATTATTXXXXXXXXXXCNCAATTTTTAAAGTTAGNAANAATGGNGGTATT
TNNCANCAAANAATTCNCAGNCCCCAAGGTAAATTCCAAGNCANCAAAAGTAAANATNTT
AGGGNAAAANAATTAATTACTGGTGAGGCCCAAGCTTTAGGAATTAAAACCCCANGTTTA
GGNTCAANATTTTTATCTTTGATTTNCAAGGNNCAATTANCNGGNTACANCAATTANATT
CTTTTTCNCAACCCNANTCCTTTTTTTTTTTTTATTTTTTATTTTTTATTTTTTTTTACA
ATTANGCACTCGTTTCTCCAACCTACCAACTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
ffxifv*pykvrktsvhknliffilyhtht**KTMATQQQQQQQQQQQQQIKARKDIQIQ
QAQSASDILGPPEISETEITTESILGDGSFGTVYKGRCRLKDVAVKVMLKQVDQKTLTDF
RKEVAIMSKIFHPNIVLFLGACTSTPGKLMICTELMKGNLESLL---

---XIFKVXXNGGIXXQXIXXPQGKFQXXKSKXXRXKXLITGEAQALGIKTPXLGSXFLS
LIXKXQLXGYXNXILFXNPXPFFFFIFYFLFFFTIXHSFLQPTN


Translated Amino Acid sequence (All Frames)
Frame A:
iffxylfnhik*erqvyikt*sflfyithihnkklwqlnnnnnnnnnnnsklrlekiykf
nkhnllliy*dhqkfqklklqqnqylvmevlvlfikvvvd*rm*q*rlc*nksikrl*li
serklql*vkffiqilyff*vhvhlhqvnl*fvqn**kvilnhyy---

---xnf*s*xxwxyxxxxnsqxpr*ipxxqk*xx*gkxinyw*gpsfrn*npxfrxxifi
fdxqgxixxxxqlxsfsqpxsffffyflffiffynxalvsptyql

Frame B:
ffxniclti*sekdkct*kldlfyfishtyiiknygnstttttttttttan*g*krytns
tsticf*yirttrnfrn*nynrintw*wkfwycl*rsl*ikgcsskgyvktsrskdfn*f
qkgscnye*nfsskyctffrcmyiytr*tydlyriner*s*iiii---

---XIFKVXXNGGIXXQXIXXPQGKFQXXKSKXXRXKXLITGEAQALGIKTPXLGSXFLS
LIXKXQLXGYXNXILFXNPXPFFFFIFYFLFFFTIXHSFLQPTN

Frame C:
ffxifv*pykvrktsvhknliffilyhtht**KTMATQQQQQQQQQQQQQIKARKDIQIQ
QAQSASDILGPPEISETEITTESILGDGSFGTVYKGRCRLKDVAVKVMLKQVDQKTLTDF
RKEVAIMSKIFHPNIVLFLGACTSTPGKLMICTELMKGNLESLL---

---qflklxxmxvfxxkxfxxpkvnskxxkvxxlgxxn*llvrpkl*elkpxv*xqxfyl
*fxrxnxxxtxixfffxtxxlffflffifyfflqlxtrfsnlpt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFF110 (VFF110Q) /CSM/VF/VFF1-A/VFF110Q.Seq.d/ 894 0.0
VFO835 (VFO835Q) /CSM/VF/VFO8-B/VFO835Q.Seq.d/ 648 0.0
SFC488 (SFC488Q) /CSM/SF/SFC4-D/SFC488Q.Seq.d/ 648 0.0
AFM648 (AFM648Q) /CSM/AF/AFM6-B/AFM648Q.Seq.d/ 648 0.0
AFM201 (AFM201Q) /CSM/AF/AFM2-A/AFM201Q.Seq.d/ 648 0.0
AFK731 (AFK731Q) /CSM/AF/AFK7-B/AFK731Q.Seq.d/ 648 0.0
AFF486 (AFF486Q) /CSM/AF/AFF4-D/AFF486Q.Seq.d/ 648 0.0
AFE822 (AFE822Q) /CSM/AF/AFE8-A/AFE822Q.Seq.d/ 648 0.0
AFA259 (AFA259Q) /CSM/AF/AFA2-C/AFA259Q.Seq.d/ 648 0.0
AFA156 (AFA156Q) /CSM/AF/AFA1-C/AFA156Q.Seq.d/ 648 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ297966|AJ297966.1 Dictyostelium discoideum mRNA for SHK1 protein. 490 0.0 3
AC124215|AC124215.14 Medicago truncatula clone mth2-32m6, WORKING DRAFT SEQUENCE, 5 ordered pieces. 46 0.011 4
BU582405|BU582405.1 PL N82 P.lunula ZAP-cDNA library Pyrocystis lunula cDNA clone 731 5' similar to SHK1 protein kinase, mRNA sequence. 50 0.043 1
AC020632|AC020632.16 Homo sapiens 3 BAC RP11-333H9 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 44 0.12 6
AP001777|AP001777.2 Homo sapiens genomic DNA, chromosome 18q22 clone:RP11-716B20, WORKING DRAFT SEQUENCE, 22 unordered pieces. 50 0.16 2
AC022275|AC022275.17 Homo sapiens chromosome 3 clone RP11-48F15, WORKING DRAFT SEQUENCE, 7 unordered pieces. 44 0.49 4
AC128253|AC128253.3 Rattus norvegicus clone CH230-468I11, WORKING DRAFT SEQUENCE, 2 unordered pieces. 38 0.55 2
AP005457|AP005457.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0532H03, WORKING DRAFT SEQUENCE, 1 ordered pieces. 46 0.68 1
AQ688945|AQ688945.1 nbxb0078L09r CUGI Rice BAC Library Oryza sativa genomic clone nbxb0078L09r, genomic survey sequence. 46 0.68 1
AC105221|AC105221.3 Homo sapiens chromosome 18, clone RP11-480N3, complete sequence. 50 0.75 4
dna update 2003. 9.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54RB7) RecName: Full=Dual specificity protein kinase shkA; ... 166 6e-40
(Q54Y55) RecName: Full=Dual specificity protein kinase shkC; ... 102 2e-20
(Q54IP4) RecName: Full=Dual specificity protein kinase shkB; ... 78 4e-13
AK316723_1(AK316723|pid:none) Arabidopsis thaliana AT5G03730 mRN... 69 2e-10
AF110519_1(AF110519|pid:none) Lycopersicon esculentum ethylene-i... 69 2e-10
AF110518_1(AF110518|pid:none) Lycopersicon esculentum ethylene-i... 69 2e-10
AF096250_1(AF096250|pid:none) Lycopersicon esculentum ethylene-r... 69 2e-10
EF014090_1(EF014090|pid:none) Synthetic construct flag-tagged pr... 69 2e-10
DQ508128_1(DQ508128|pid:none) Synthetic construct flag-tagged pr... 69 2e-10
AL606684_15(AL606684|pid:none) Oryza sativa genomic DNA, chromos... 68 3e-10
protein update 2009. 6.19
PSORT

psg: 0.66 gvh: 0.44 alm: 0.30 top: 0.43 tms: 0.07 mit: 0.34 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.02 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: endoplasmic reticulum
8.0 %: Golgi
8.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VFF110 is cyt

5' end seq. ID VFF110F
5' end seq.
>VFF110F.Seq
ATTTTTTTTNAATATTTGTTTAACCATATAAAGTGAGAAAGACAAGTGTACATAAAAACT
TGATCTTTTTTATTTTATATCACACACATACATAATAAAAAACTATGGCAACTCAACAAC
AACAACAACAACAACAACAACAACAACAGCAAATTAAGGCTAGAAAAGATATACAAATTC
AACAAGCACAATCTGCTTCTGATATATTAGGACCACCAGAAATTTCAGAAACTGAAATTA
CAACAGAATCAATACTTGGTGATGGAAGTTTTGGTACTGTTTATAAAGGTCGTTGTAGAT
TAAAGGATGTAGCAGTAAAGGTTATGTTAAAACAAGTCGATCAAAAGACTTTAACTGATT
TCAGAAAGGAAGTTGCAATTATGAGTAAAATTTTTCATCCAAATATTGTACTTTTTTTAG
GTGCATGTACATCTACACCAGGTAAACTTATGATTTGTACAGAATTAATGAAAGGTAATC
TTGAATCATTATTATT----------
Length of 5' end seq. 496
3' end seq. ID VFF110Z
3' end seq.
>VFF110Z.Seq
----------CNCAATTTTTAAAGTTAGNAANAATGGNGGTATTTNNCANCAAANAATTC
NCAGNCCCCAAGGTAAATTCCAAGNCANCAAAAGTAAANATNTTAGGGNAAAANAATTAA
TTACTGGTGAGGCCCAAGCTTTAGGAATTAAAACCCCANGTTTAGGNTCAANATTTTTAT
CTTTGATTTNCAAGGNNCAATTANCNGGNTACANCAATTANATTCTTTTTCNCAACCCNA
NTCCTTTTTTTTTTTTTATTTTTTATTTTTTATTTTTTTTTACAATTANGCACTCGTTTC
TCCAACCTACCAACTC
Length of 3' end seq. 306
Connected seq. ID VFF110P
Connected seq.
>VFF110P.Seq
ATTTTTTTTNAATATTTGTTTAACCATATAAAGTGAGAAAGACAAGTGTACATAAAAACT
TGATCTTTTTTATTTTATATCACACACATACATAATAAAAAACTATGGCAACTCAACAAC
AACAACAACAACAACAACAACAACAACAGCAAATTAAGGCTAGAAAAGATATACAAATTC
AACAAGCACAATCTGCTTCTGATATATTAGGACCACCAGAAATTTCAGAAACTGAAATTA
CAACAGAATCAATACTTGGTGATGGAAGTTTTGGTACTGTTTATAAAGGTCGTTGTAGAT
TAAAGGATGTAGCAGTAAAGGTTATGTTAAAACAAGTCGATCAAAAGACTTTAACTGATT
TCAGAAAGGAAGTTGCAATTATGAGTAAAATTTTTCATCCAAATATTGTACTTTTTTTAG
GTGCATGTACATCTACACCAGGTAAACTTATGATTTGTACAGAATTAATGAAAGGTAATC
TTGAATCATTATTATT----------CNCAATTTTTAAAGTTAGNAANAATGGNGGTATT
TNNCANCAAANAATTCNCAGNCCCCAAGGTAAATTCCAAGNCANCAAAAGTAAANATNTT
AGGGNAAAANAATTAATTACTGGTGAGGCCCAAGCTTTAGGAATTAAAACCCCANGTTTA
GGNTCAANATTTTTATCTTTGATTTNCAAGGNNCAATTANCNGGNTACANCAATTANATT
CTTTTTCNCAACCCNANTCCTTTTTTTTTTTTTATTTTTTATTTTTTATTTTTTTTTACA
ATTANGCACTCGTTTCTCCAACCTACCAACTC
Length of connected seq. 802
Full length Seq ID -
Full length Seq. -
Length of full length seq. -