>VFE785 (VFE785Q) /CSM/VF/VFE7-D/VFE785Q.Seq.d/
ACAATCNATAGAAATAATGGAAAATAGATACATTTCCAGAATCGAAACCATTTCTTCTCA
TTTGTTATCAACAAATGATGTCTCCTCACAAAATGAAAGTGAATCAATTACCTTTGTAAA
ACCATTACCAAAGAATAAAAAAGATCACGACCAGTCCATCGAATCCGATTCATCATTTAC
AAGAGAAAAACAATTTGAAGGAGAATTAGATATTTTAGGAGAGATTAATTCAAAGACAGG
TTTATTTGAAATTAAACAAGTACCATATCAATTATCATTTGATCAAGGATTTTTTCATGC
ATGTAGGGCAATTGAAATATTAACAGAAAAAGATCCAAAAAGAATTATATGTTTAGGTAT
TGCTGGCCCAGTTGGTGCTGGAAAAACAACATTAGCTAATAAAATCGGTAGTCTTGTTAA
TGGTGTTATAATTTCACTTCAAGATXXXXXXXXXXAGCATGGTCAATTCAATATCACCTT
CTACAATGNAATGATGGATGGTGCCGTCAATACTCGTCCATCTTTAAATTTCGAAATCTC
TGTCAAANCTTTGGGTGGTCTACTCTCTTTAGGTTATCAAATTGGTGCTATCCTCAATCG
TACCGTTGAGGTTTGGTATGATAAAAATGGTGTTGTCATCACTAAAGAATATATCAAAGA
ATTGGAGAAACATTTCGTTCAAATTAAAGGTCACTCTCGTAGAGAAGTATTAGATAGTGC
TGAAAAATTAAAAATCACTGGTAATCATGTCCCTCAAACTTTTCTTTATCTTTATTTTAA
AAAATTAAAAAAAAGTAAAAATCCAAATTATTCAAAATTAAAACCAAATAATACAAATTC
AAAAATTTTAAAAAATA

QSIEIMENRYISRIETISSHLLSTNDVSSQNESESITFVKPLPKNKKDHDQSIESDSSFT
REKQFEGELDILGEINSKTGLFEIKQVPYQLSFDQGFFHACRAIEILTEKDPKRIICLGI
AGPVGAGKTTLANKIGSLVNGVIISLQD---

---HGQFNITFYNXMMDGAVNTRPSLNFEISVKXLGGLLSLGYQIGAILNRTVEVWYDKN
GVVITKEYIKELEKHFVQIKGHSRREVLDSAEKLKITGNHVPQTFLYLYFKKLKKSKNPN
YSKLKPNNTNSKILKN

Frame A:
tixrnngk*ihfqnrnhffsfvink*clltk*k*inylcktitke*krsrpvhrirfiiy
krkti*rriryfrrd*fkdrfi*n*tstisiii*srifscm*gn*ninrkrskknymfry
cwpswcwknnis**nr*sc*wcynftsr---

---smvnsispstmx*wmvpsilvhl*iskslsxlwvvysl*viklvlssivplrfgmik
mvlsslknisknwrnisfklkvtlveky*ivlkn*kslvimslklffifilkn*kkvkiq
iiqn*nqiiqiqkf*ki

Frame B:
QSIEIMENRYISRIETISSHLLSTNDVSSQNESESITFVKPLPKNKKDHDQSIESDSSFT
REKQFEGELDILGEINSKTGLFEIKQVPYQLSFDQGFFHACRAIEILTEKDPKRIICLGI
AGPVGAGKTTLANKIGSLVNGVIISLQD---

---awsiqyhllqxndgwcrqyssifkfrnlcqxfgwstlfrlsnwcypqsyr*glv**k
wcchh*riyqrigetfrsn*rsls*rsir*c*kiknhw*scpsnfslslf*kikkk*ksk
lfkiktk*ykfknfkk

Frame C:
nx*k*wkidtfpeskpfllicyqqmmsphkmkvnqlpl*nhyqrikkittspsnpihhlq
eknnlken*if*erliqrqvylklnkyhinyhlikdffmhvgqlky*qkkiqkelyv*vl
laqlvlekqh*liksvvllmvl*fhfk---

---HGQFNITFYNXMMDGAVNTRPSLNFEISVKXLGGLLSLGYQIGAILNRTVEVWYDKN
GVVITKEYIKELEKHFVQIKGHSRREVLDSAEKLKITGNHVPQTFLYLYFKKLKKSKNPN
YSKLKPNNTNSKILKN

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE785 (VFE785Q) /CSM/VF/VFE7-D/VFE785Q.Seq.d/                       1465   0.0
VFC747 (VFC747Q) /CSM/VF/VFC7-B/VFC747Q.Seq.d/                        868   0.0
FC-AC03 (FC-AC03Q) /CSM/FC/FC-AC/FC-AC03Q.Seq.d/                      864   0.0
SSL453 (SSL453Q) /CSM/SS/SSL4-C/SSL453Q.Seq.d/                        644   0.0
SFF596 (SFF596Q) /CSM/SF/SFF5-D/SFF596Q.Seq.d/                        620   e-177
SLK633 (SLK633Q) /CSM/SL/SLK6-B/SLK633Q.Seq.d/                         42   0.014
SLA749 (SLA749Q) /CSM/SL/SLA7-C/SLA749Q.Seq.d/                         42   0.014
SFH311 (SFH311Q) /CSM/SF/SFH3-A/SFH311Q.Seq.d/                         42   0.014
CFH546 (CFH546Q) /CSM/CF/CFH5-B/CFH546Q.Seq.d/                         42   0.014
SHK759 (SHK759Q) /CSM/SH/SHK7-C/SHK759Q.Seq.d/                         40   0.055

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY007802|AY007802.1 Dictyostelium discoideum uridine kinase-like protein mRNA, complete cds.   842  0.0  2
AY007803|AY007803.1 Dictyostelium discoideum uridine kinase-like protein gene, complete cds.   620  0.0  3
U68242|U68242.1 Bartonella bacilliformis ABC transporter (txpA) gene, partial cds, and alanine tRNA synthetase (alaS) gene, complete cds.    42  0.11  2
AC121372|AC121372.5 Rattus norvegicus clone CH230-202E17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.25  6
AL132715|AL132715.3 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC R-368E9 of  library RPCI-11 from chromosome 14 of Homo sapiens (Human).    38  0.34  6
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    32  0.37  9
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    44  0.40  7
AC069146|AC069146.6 Homo sapiens BAC clone RP11-39B6 from 2, complete sequence.    40  0.49  2
BZ429393|BZ429393.1 BONHG86TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONHG86, DNA sequence.    46  0.72  1
BZ512629|BZ512629.1 BOMQC59TR BO_2_3_KB Brassica oleracea genomic clone BOMQC59, DNA sequence.    46  0.72  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9GNF0) RecName: Full=Uridine-cytidine kinase D;          EC=2....   280   6e-74
CP000594_315(CP000594|pid:none) Ostreococcus lucimarinus CCE9901...    61   4e-08
AF480496_13(AF480496|pid:none) Oryza sativa clone BAC 49D11, com...    59   2e-07
AK102236_1(AK102236|pid:none) Oryza sativa Japonica Group cDNA c...    59   2e-07
AC016662_15(AC016662|pid:none) Arabidopsis thaliana chromosome 1...    57   6e-07
AL731614_16(AL731614|pid:none) Oryza sativa genomic DNA, chromos...    57   1e-06
EU730895_6(EU730895|pid:none) Brachypodium distachyon clone BAC ...    57   1e-06
AC079829_16(AC079829|pid:none) Arabidopsis thaliana chromosome 1...    55   3e-06
AM463144_1(AM463144|pid:none) Vitis vinifera contig VV78X078650....    50   7e-05
A84425(A84425) hypothetical protein At2g01460 [imported] - Arabi...    43   0.012

 psg: 0.75  gvh: 0.52  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for VFE785 is nuc

>VFE785F.Seq
ACAATCNATAGAAATAATGGAAAATAGATACATTTCCAGAATCGAAACCATTTCTTCTCA
TTTGTTATCAACAAATGATGTCTCCTCACAAAATGAAAGTGAATCAATTACCTTTGTAAA
ACCATTACCAAAGAATAAAAAAGATCACGACCAGTCCATCGAATCCGATTCATCATTTAC
AAGAGAAAAACAATTTGAAGGAGAATTAGATATTTTAGGAGAGATTAATTCAAAGACAGG
TTTATTTGAAATTAAACAAGTACCATATCAATTATCATTTGATCAAGGATTTTTTCATGC
ATGTAGGGCAATTGAAATATTAACAGAAAAAGATCCAAAAAGAATTATATGTTTAGGTAT
TGCTGGCCCAGTTGGTGCTGGAAAAACAACATTAGCTAATAAAATCGGTAGTCTTGTTAA
TGGTGTTATAATTTCACTTCAAGAT----------

>VFE785Z.Seq
----------AGCATGGTCAATTCAATATCACCTTCTACAATGNAATGATGGATGGTGCC
GTCAATACTCGTCCATCTTTAAATTTCGAAATCTCTGTCAAANCTTTGGGTGGTCTACTC
TCTTTAGGTTATCAAATTGGTGCTATCCTCAATCGTACCGTTGAGGTTTGGTATGATAAA
AATGGTGTTGTCATCACTAAAGAATATATCAAAGAATTGGAGAAACATTTCGTTCAAATT
AAAGGTCACTCTCGTAGAGAAGTATTAGATAGTGCTGAAAAATTAAAAATCACTGGTAAT
CATGTCCCTCAAACTTTTCTTTATCTTTATTTTAAAAAATTAAAAAAAAGTAAAAATCCA
AATTATTCAAAATTAAAACCAAATAATACAAATTCAAAAATTTTAAAAAATA

>VFE785P.Seq
ACAATCNATAGAAATAATGGAAAATAGATACATTTCCAGAATCGAAACCATTTCTTCTCA
TTTGTTATCAACAAATGATGTCTCCTCACAAAATGAAAGTGAATCAATTACCTTTGTAAA
ACCATTACCAAAGAATAAAAAAGATCACGACCAGTCCATCGAATCCGATTCATCATTTAC
AAGAGAAAAACAATTTGAAGGAGAATTAGATATTTTAGGAGAGATTAATTCAAAGACAGG
TTTATTTGAAATTAAACAAGTACCATATCAATTATCATTTGATCAAGGATTTTTTCATGC
ATGTAGGGCAATTGAAATATTAACAGAAAAAGATCCAAAAAGAATTATATGTTTAGGTAT
TGCTGGCCCAGTTGGTGCTGGAAAAACAACATTAGCTAATAAAATCGGTAGTCTTGTTAA
TGGTGTTATAATTTCACTTCAAGAT----------AGCATGGTCAATTCAATATCACCTT
CTACAATGNAATGATGGATGGTGCCGTCAATACTCGTCCATCTTTAAATTTCGAAATCTC
TGTCAAANCTTTGGGTGGTCTACTCTCTTTAGGTTATCAAATTGGTGCTATCCTCAATCG
TACCGTTGAGGTTTGGTATGATAAAAATGGTGTTGTCATCACTAAAGAATATATCAAAGA
ATTGGAGAAACATTTCGTTCAAATTAAAGGTCACTCTCGTAGAGAAGTATTAGATAGTGC
TGAAAAATTAAAAATCACTGGTAATCATGTCCCTCAAACTTTTCTTTATCTTTATTTTAA
AAAATTAAAAAAAAGTAAAAATCCAAATTATTCAAAATTAAAACCAAATAATACAAATTC
AAAAATTTTAAAAAATA