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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE778
Library VF
(Link to library)
Clone ID VFE778
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16279-1
Original site URL
Representative seq. ID VFE778P
(Link to Original site)
Representative DNA sequence 
>VFE778 (VFE778Q) /CSM/VF/VFE7-D/VFE778Q.Seq.d/
ATTAATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATT
AGATGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCA
AAATAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGC
TTTAACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGA
TCCAGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGG
AACTAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGA
TAAAACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGG
TAGAGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACT
TGCAACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGA
GAATGATGAAATTCXXXXXXXXXXTAGTTNCAATNCCATTCCAGNGTGAGTCANCCATTT
GTGGTGATATTNGTTTAGCTCCATTCTATGATATGAAAGAAATGCGTGCAAAAGTTGAAG
GTTATATCAAAGATATCAATGCCAATATCNCTGAACTTCGTAATAGAGGTCCATACAGTA
AATATGATGTACCAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTCTCTATTGAAT
GGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACTCGACTCTGATGGTTACAAAGCAC
TTGGTAAAGCTACTTCTGAAATTTTAGGTTCATTAACTCCAGTTGCAACTTGTGGTACTC
TTCCTTTGGTTCGTGATCTCCAAGATAGTGGTTTCGATATTCAAATTACTGGTTTTGGTA
AAGAAGAAACTTATCATGCTGATAATGAATATGCTTTATTATCTGATTTTAAAAATGCTA
TTAAAATTTTATCTCGTACAATTGATTTATNAGAAAAAAATTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
li*QISINKKMTKPVASYELDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEA
LTPYLKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPAD
KTAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEE
NDEI---

---VXXPFQXESXICGDIXLAPFYDMKEMRAKVEGYIKDINANIXELRNRGPYSKYDVPA
SEGVEPVKGSVSIEWLGEASAGVACKLDSDGYKALGKATSEILGSLTPVATCGTLPLVRD
LQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIKILSRTIDLXEKN
Translated Amino Acid sequence (All Frames) 
Frame A:
inltnfnk*knd*tscfi*ir*kkipyiir*inw*n*kspk*ttsfnsn*r*crssch*s
fnsilkskwwcfrirtssl*ssklskkr*hyy*iprylqrn*ftknnficwftfrcsss*
*nclg*ksipiny*r**iiw*ryn*lfrtcciinrfiystcn*ktst*tfnfcsiyck*r
e**n---

---*xqxhsxvsxpfvvixv*lhsmi*kkcvqklkviskismpislnfvievhtvnmmyq
plkvlnqskvqsllng*vkhqlvslvnstlmvtkhlvklllkf*vh*lqlqlvvlflwfv
iskivvsifkllvlvkkklimlimnmlyylilkmllkfylvqliyxkki

Frame B:
li*QISINKKMTKPVASYELDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEA
LTPYLKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPAD
KTAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEE
NDEI---

---sxnxipx*vxhlw*yxfssil*yernacks*rlyqryqcqyx*ts**rsiq*i*cts
l*rc*tsqrfsly*mvr*siswcrl*trl*wlqstw*syf*nfrfinsscnlwyssfgs*
spr*wfrysnywfw*rrnlsc***icfii*f*kcy*nfisyn*fxrkkl

Frame C:
*fnkfq*ikk*lnqllhmn*mkkdslhy*vn*lvklkiskidhql*fqlkimqvvmslkl
*lht*kqmvvf*n*nkftviq*tiqkevtlllntqvppkelvhqkqfhllvhi*m*fqli
kllgieihsn*llkvinymvevqliv*dmlhy*qiylfnlqlknqhlniqflqyll*vkr
mmkf---

---VXXPFQXESXICGDIXLAPFYDMKEMRAKVEGYIKDINANIXELRNRGPYSKYDVPA
SEGVEPVKGSVSIEWLGEASAGVACKLDSDGYKALGKATSEILGSLTPVATCGTLPLVRD
LQDSGFDIQITGFGKEETYHADNEYALLSDFKNAIKILSRTIDLXEKN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE778 (VFE778Q) /CSM/VF/VFE7-D/VFE778Q.Seq.d/                       1945   0.0
VHJ351 (VHJ351Q) /CSM/VH/VHJ3-C/VHJ351Q.Seq.d/                       1057   0.0
VFO188 (VFO188Q) /CSM/VF/VFO1-D/VFO188Q.Seq.d/                       1057   0.0
VFN809 (VFN809Q) /CSM/VF/VFN8-A/VFN809Q.Seq.d/                       1057   0.0
VFN528 (VFN528Q) /CSM/VF/VFN5-B/VFN528Q.Seq.d/                       1057   0.0
VFN257 (VFN257Q) /CSM/VF/VFN2-C/VFN257Q.Seq.d/                       1057   0.0
VFM839 (VFM839Q) /CSM/VF/VFM8-B/VFM839Q.Seq.d/                       1057   0.0
VFM730 (VFM730Q) /CSM/VF/VFM7-B/VFM730Q.Seq.d/                       1057   0.0
VFM548 (VFM548Q) /CSM/VF/VFM5-B/VFM548Q.Seq.d/                       1057   0.0
VFL392 (VFL392Q) /CSM/VF/VFL3-D/VFL392Q.Seq.d/                       1057   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U23957|U23957.1 Dictyostelium discoideum P52D mRNA, complete cds.  1011  0.0  3
BZ781142|BZ781142.1 ii24e02.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor genomic clone ii24e02, DNA sequence.    48  0.23  1
BX322588|BX322588.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.42  3
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38  0.89  9
AL717293|AL717293.1 Danio rerio embryonic inner ear subtracted cDNA library 5PRIM end of clone BN0AA024ZG01 of Danio rerio.    46  0.89  1
BZ890797|BZ890797.1 CH240_285G7.TJ CHORI-240 Bos taurus genomic clone CH240_285G7, DNA sequence.    46  0.89  1
AL392166|AL392166.19 Human DNA sequence from clone RP11-758J17 on chromosome 6.    42  0.97  5
AC141854|AC141854.2 Bos taurus clone RP42-429D15, WORKING DRAFT SEQUENCE, 9 ordered pieces.    46  1.0  2
BX248584|BX248584.1 Blochmannia floridanus complete genome; segment 1/3.    32  1.7  7
Z79753|Z79753.1 Caenorhabditis elegans cosmid F20G2.              32  2.0  4
dna update 2003. 9.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54638) RecName: Full=Acetylornithine deacetylase;          EC=...   353   6e-96
U23957_1(U23957|pid:none) Dictyostelium discoideum P52D mRNA, co...   348   2e-94
AB036420_1(AB036420|pid:none) Citrullus lanatus mRNA for DIP-1, ...   175   2e-42
CP001325_366(CP001325|pid:none) Micromonas sp. RCC299 chromosome...   172   1e-41
AF170086_1(AF170086|pid:none) Cucurbita pepo silverleaf whitefly...   172   2e-41
CP000582_97(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ...   167   7e-40
AF360346_1(AF360346|pid:none) Arabidopsis thaliana putative N-ac...   160   7e-38
AK101568_1(AK101568|pid:none) Oryza sativa Japonica Group cDNA c...   159   2e-37
AL021889_1(AL021889|pid:none) Arabidopsis thaliana DNA chromosom...   149   2e-34
FJ899850_1(FJ899850|pid:none) Populus maximowiczii x Populus nig...   135   2e-30
protein update 2009. 6.19
PSORT 

 psg: 0.64  gvh: 0.42  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for VFE778 is nuc
5' end seq. ID VFE778F
5' end seq. 
>VFE778F.Seq
ATTAATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATT
AGATGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCA
AAATAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGC
TTTAACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGA
TCCAGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGG
AACTAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGA
TAAAACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGG
TAGAGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACT
TGCAACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGA
GAATGATGAAATTC----------
Length of 5' end seq. 554
3' end seq. ID VFE778Z
3' end seq. 
>VFE778Z.Seq
----------TAGTTNCAATNCCATTCCAGNGTGAGTCANCCATTTGTGGTGATATTNGT
TTAGCTCCATTCTATGATATGAAAGAAATGCGTGCAAAAGTTGAAGGTTATATCAAAGAT
ATCAATGCCAATATCNCTGAACTTCGTAATAGAGGTCCATACAGTAAATATGATGTACCA
GCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTCTCTATTGAATGGTTAGGTGAAGCA
TCAGCTGGTGTCGCTTGTAAACTCGACTCTGATGGTTACAAAGCACTTGGTAAAGCTACT
TCTGAAATTTTAGGTTCATTAACTCCAGTTGCAACTTGTGGTACTCTTCCTTTGGTTCGT
GATCTCCAAGATAGTGGTTTCGATATTCAAATTACTGGTTTTGGTAAAGAAGAAACTTAT
CATGCTGATAATGAATATGCTTTATTATCTGATTTTAAAAATGCTATTAAAATTTTATCT
CGTACAATTGATTTATNAGAAAAAAATTA
Length of 3' end seq. 499
Connected seq. ID VFE778P
Connected seq. 
>VFE778P.Seq
ATTAATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATT
AGATGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCA
AAATAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGC
TTTAACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGA
TCCAGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGG
AACTAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGA
TAAAACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGG
TAGAGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACT
TGCAACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGA
GAATGATGAAATTC----------TAGTTNCAATNCCATTCCAGNGTGAGTCANCCATTT
GTGGTGATATTNGTTTAGCTCCATTCTATGATATGAAAGAAATGCGTGCAAAAGTTGAAG
GTTATATCAAAGATATCAATGCCAATATCNCTGAACTTCGTAATAGAGGTCCATACAGTA
AATATGATGTACCAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTCTCTATTGAAT
GGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACTCGACTCTGATGGTTACAAAGCAC
TTGGTAAAGCTACTTCTGAAATTTTAGGTTCATTAACTCCAGTTGCAACTTGTGGTACTC
TTCCTTTGGTTCGTGATCTCCAAGATAGTGGTTTCGATATTCAAATTACTGGTTTTGGTA
AAGAAGAAACTTATCATGCTGATAATGAATATGCTTTATTATCTGATTTTAAAAATGCTA
TTAAAATTTTATCTCGTACAATTGATTTATNAGAAAAAAATTA
Length of connected seq. 1053
Full length Seq ID -
Full length Seq. -
Length of full length seq. -