NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE739
Library VF
(Link to library)
Clone ID VFE739
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16603-1
Original site URL
Representative seq. ID VFE739P
(Link to Original site)
Representative DNA sequence 
>VFE739 (VFE739Q) /CSM/VF/VFE7-B/VFE739Q.Seq.d/
TAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATNATGATTAATGGTGAAG
GTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTTGGGCTAAACAAGTTA
GTGCACTTGTTGTTTCTCTTGAACATCGTTATTATGGTGCTAGTTTTGTAACTGAAGACC
TTTCACTTGAAAATTTACAATGGTTAAATTCAGCACAAGCATTAGCAGATAATGCAGTTT
TTAGAAATTTTGTAGCACAACAATATAATGTACCAAAAGAATCAAAATGGATTTCATTTG
GTGGTAGTTATTCAGGAGCATTAACTTCATGGTTTAGAATTAAATATCCACATTTAGTTG
ATGCCACCATTGCATCAAGTGCACCAGTTAACCCAGAAGTTAACTTTTATCAATATTTGG
AGACAGTTCAAACTGCATTATTAGCATCAAAGTCAAATGGTAATTTATGTGTTGAAAACA
TTAACATTXXXXXXXXXXGATATCGATTACCTTTGCAATATCATGACTAATCAATCATCA
GATCCATTGACAAACTATATCCAAATTTGGAATCAATATGCTGATGGTGAATGTGTTGAT
GTTTCATATGCTTCAATGATCGCTCAAAATCAAAACGTTACCAATGATGAAAATGCCATT
GGTGGTAGAATGTGGTTCTATCAAACTTGTGTTGAATTTGGTTATTATCAATCAAGTGAT
GCTCCATCTGCAAATCAACCATTTGGTAATTTATTCCCATTCCAACCATATCAAATTCAA
CAATGTGCCGATAGTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACAATCACT
GAATATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGTAAATGGT
TCAAATGATGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAATACT
TTATACATTATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTATCACCT
CCAACTCTTGACNCAAGCACAACA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
INDQYWDGTGPVFXMINGEGPMDINTVTQLQFVVWAKQVSALVVSLEHRYYGASFVTEDL
SLENLQWLNSAQALADNAVFRNFVAQQYNVPKESKWISFGGSYSGALTSWFRIKYPHLVD
ATIASSAPVNPEVNFYQYLETVQTALLASKSNGNLCVENINI---

---DIDYLCNIMTNQSSDPLTNYIQIWNQYADGECVDVSYASMIAQNQNVTNDENAIGGR
MWFYQTCVEFGYYQSSDAPSANQPFGNLFPFQPYQIQQCADSFGIPNMYPNVNWTITEYG
GINPEPSSVDNTLYVNGSNDEWHNLAILPGNANAKNTLYIIGTSHCADMMIPTSVSPPTL
DXSTT
Translated Amino Acid sequence (All Frames) 
Frame A:
*lmtnigmvqvqflx*lmvkvqwilil*pnfnllfglnklvhllfllnivimvlvl*lkt
fhlkiyng*iqhkh*qimqfleil*hnnimyqknqngfhlvvviqeh*lhglelnihi*l
mpplhqvhqltqkltfiniwrqfklhy*hqsqmviyvlktlt---

---DIDYLCNIMTNQSSDPLTNYIQIWNQYADGECVDVSYASMIAQNQNVTNDENAIGGR
MWFYQTCVEFGYYQSSDAPSANQPFGNLFPFQPYQIQQCADSFGIPNMYPNVNWTITEYG
GINPEPSSVDNTLYVNGSNDEWHNLAILPGNANAKNTLYIIGTSHCADMMIPTSVSPPTL
DXSTT

Frame B:
n**pilgwyrssfyxd*w*rsngy*ycnptsicclg*ts*ctccfs*tsllwc*fcn*rp
ft*kftmvkfstsisr*csf*kfcstti*ctkrikmdfiww*lfrsinfmv*n*istfs*
chhcikcts*prs*llsifgdssnciisikvkw*fmc*kh*h---

---isitfais*linhqih*qtiskfginmlmvnvlmfhmlq*slkiktlpmmkmplvve
cgsiklvlnlviinqvmlhlqinhlviyshsnhikfnnvpivlvfqiciqtligqslnmv
vliqnhplliipym*mvqmmngtilqsyqvmqmlkilytllvqvivli**fqlqyhlqll
tqaq

Frame C:
INDQYWDGTGPVFXMINGEGPMDINTVTQLQFVVWAKQVSALVVSLEHRYYGASFVTEDL
SLENLQWLNSAQALADNAVFRNFVAQQYNVPKESKWISFGGSYSGALTSWFRIKYPHLVD
ATIASSAPVNPEVNFYQYLETVQTALLASKSNGNLCVENINI---

---yrlplqyhd*siirsidklypnlesic*w*mc*cficfndrskskryq**kchww*n
vvlsnlc*iwllsik*csickstiw*fipiptisnstmcr*fwyskyvskr*ldnh*iww
y*srtilc**ylickwfk**maqscnltr*ckc*kyfihywykslc*yddsnfsitsns*
xkhn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE739 (VFE739Q) /CSM/VF/VFE7-B/VFE739Q.Seq.d/                       1998   0.0
SFJ396 (SFJ396Q) /CSM/SF/SFJ3-D/SFJ396Q.Seq.d/                       1061   0.0
SFF629 (SFF629Q) /CSM/SF/SFF6-B/SFF629Q.Seq.d/                       1061   0.0
SFG841 (SFG841Q) /CSM/SF/SFG8-B/SFG841Q.Seq.d/                       1047   0.0
VFM601 (VFM601Q) /CSM/VF/VFM6-A/VFM601Q.Seq.d/                       1045   0.0
VFH887 (VFH887Q) /CSM/VF/VFH8-D/VFH887Q.Seq.d/                       1045   0.0
VFH715 (VFH715Q) /CSM/VF/VFH7-A/VFH715Q.Seq.d/                       1045   0.0
VFF423 (VFF423Q) /CSM/VF/VFF4-A/VFF423Q.Seq.d/                       1045   0.0
VFE277 (VFE277Q) /CSM/VF/VFE2-D/VFE277Q.Seq.d/                       1045   0.0
VFD525 (VFD525Q) /CSM/VF/VFD5-B/VFD525Q.Seq.d/                       1045   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AU159949|AU159949.1 Homo sapiens cDNA clone:Y79AA1000741, 3' end, expressed in Y79 (retinoblastoma).    42  0.075  2
CB097763|CB097763.1 ku44g10.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:YM67_CAEEL P34528 HYPOTHETICAL 65.3 KD PROTEIN K12H4.7 IN CHROMOSOME III. [1] ;, mRNA sequence.    48  0.22  1
CB097614|CB097614.1 ku42h12.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:YM67_CAEEL P34528 HYPOTHETICAL 65.3 KD PROTEIN K12H4.7 IN CHROMOSOME III. [1] ;, mRNA sequence.    48  0.22  1
CA799428|CA799428.1 sat33f03.y1 Gm-c1056 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1056-3318 5', mRNA sequence.    46  0.88  1
BM520804|BM520804.1 sal30g03.y1 Gm-c1059 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1059-3773 5', mRNA sequence.    46  0.88  1
AI900122|AI900122.1 sc01b07.y1 Gm-c1012 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1012-878 5', mRNA sequence.    46  0.88  1
AW705505|AW705505.1 sk49h12.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-5952 5', mRNA sequence.    46  0.88  1
AI441512|AI441512.1 sa87c11.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-6285 5', mRNA sequence.    46  0.88  1
AW705268|AW705268.1 sk59a02.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-6819 5', mRNA sequence.    46  0.88  1
BI317694|BI317694.1 saf19h09.y1 Gm-c1076 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1076-1506 5', mRNA sequence.    46  0.88  1
dna update 2003. 9.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC161646_1(BC161646|pid:none) Xenopus tropicalis hypothetical pr...   147   8e-34
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei...   145   2e-33
BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495...   145   3e-33
BT080886_1(BT080886|pid:none) Caligus clemensi clone ccle-evs-50...   129   1e-28
AE014296_1236(AE014296|pid:none) Drosophila melanogaster chromos...   126   1e-27
(Q9NQE7) RecName: Full=Thymus-specific serine protease;         ...   125   2e-27
S44851(S44851)K12H4.7 protein - Caenorhabditis elegans                125   2e-27
L14331_6(L14331|pid:none) Caenorhabditis elegans cosmid K12H4, c...   125   2e-27
(P34528) RecName: Full=Putative serine protease K12H4.7;        ...   125   2e-27
T16490(T16490)hypothetical protein F56F10.1 - Caenorhabditis ele...   121   5e-26
protein update 2009. 6.19
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for VFE739 is cyt
5' end seq. ID VFE739F
5' end seq. 
>VFE739F.Seq
TAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATNATGATTAATGGTGAAG
GTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTTGGGCTAAACAAGTTA
GTGCACTTGTTGTTTCTCTTGAACATCGTTATTATGGTGCTAGTTTTGTAACTGAAGACC
TTTCACTTGAAAATTTACAATGGTTAAATTCAGCACAAGCATTAGCAGATAATGCAGTTT
TTAGAAATTTTGTAGCACAACAATATAATGTACCAAAAGAATCAAAATGGATTTCATTTG
GTGGTAGTTATTCAGGAGCATTAACTTCATGGTTTAGAATTAAATATCCACATTTAGTTG
ATGCCACCATTGCATCAAGTGCACCAGTTAACCCAGAAGTTAACTTTTATCAATATTTGG
AGACAGTTCAAACTGCATTATTAGCATCAAAGTCAAATGGTAATTTATGTGTTGAAAACA
TTAACATT----------
Length of 5' end seq. 488
3' end seq. ID VFE739Z
3' end seq. 
>VFE739Z.Seq
----------GATATCGATTACCTTTGCAATATCATGACTAATCAATCATCAGATCCATT
GACAAACTATATCCAAATTTGGAATCAATATGCTGATGGTGAATGTGTTGATGTTTCATA
TGCTTCAATGATCGCTCAAAATCAAAACGTTACCAATGATGAAAATGCCATTGGTGGTAG
AATGTGGTTCTATCAAACTTGTGTTGAATTTGGTTATTATCAATCAAGTGATGCTCCATC
TGCAAATCAACCATTTGGTAATTTATTCCCATTCCAACCATATCAAATTCAACAATGTGC
CGATAGTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACAATCACTGAATATGG
TGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGTAAATGGTTCAAATGA
TGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAATACTTTATACAT
TATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTATCACCTCCAACTCT
TGACNCAAGCACAACA
Length of 3' end seq. 546
Connected seq. ID VFE739P
Connected seq. 
>VFE739P.Seq
TAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATNATGATTAATGGTGAAG
GTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTTGGGCTAAACAAGTTA
GTGCACTTGTTGTTTCTCTTGAACATCGTTATTATGGTGCTAGTTTTGTAACTGAAGACC
TTTCACTTGAAAATTTACAATGGTTAAATTCAGCACAAGCATTAGCAGATAATGCAGTTT
TTAGAAATTTTGTAGCACAACAATATAATGTACCAAAAGAATCAAAATGGATTTCATTTG
GTGGTAGTTATTCAGGAGCATTAACTTCATGGTTTAGAATTAAATATCCACATTTAGTTG
ATGCCACCATTGCATCAAGTGCACCAGTTAACCCAGAAGTTAACTTTTATCAATATTTGG
AGACAGTTCAAACTGCATTATTAGCATCAAAGTCAAATGGTAATTTATGTGTTGAAAACA
TTAACATT----------GATATCGATTACCTTTGCAATATCATGACTAATCAATCATCA
GATCCATTGACAAACTATATCCAAATTTGGAATCAATATGCTGATGGTGAATGTGTTGAT
GTTTCATATGCTTCAATGATCGCTCAAAATCAAAACGTTACCAATGATGAAAATGCCATT
GGTGGTAGAATGTGGTTCTATCAAACTTGTGTTGAATTTGGTTATTATCAATCAAGTGAT
GCTCCATCTGCAAATCAACCATTTGGTAATTTATTCCCATTCCAACCATATCAAATTCAA
CAATGTGCCGATAGTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACAATCACT
GAATATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGTAAATGGT
TCAAATGATGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAATACT
TTATACATTATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTATCACCT
CCAACTCTTGACNCAAGCACAACA
Length of connected seq. 1034
Full length Seq ID -
Full length Seq. -
Length of full length seq. -