AFM427
Library AF
(Link to library)
Clone ID AFM427
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM427P
(Link to Original site)
Representative DNA sequence
>AFM427 (AFM427Q) /CSM/AF/AFM4-B/AFM427Q.Seq.d/
ATTCATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAA
TATAAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTA
TATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAA
TATACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAG
AAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCT
AAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGAT
TTTGTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGA
GGTATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGA
ATTCCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGAATGAGATGTCCA
GAAXXXXXXXXXXATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAG
GTTCCAGCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCAC
AACTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATC
CAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGC
TATCATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCA
ATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTG
CTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAG
GTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCT
CAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTT
CAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCG
CTCCATCCTCTG
sequence update 2009. 4. 3
Translated Amino Acid sequence
ihsil*l*kkesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSE
YTCKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRD
FVPYHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCP
E---

---CSPKNDECKWHRCPPGSSCFNSRNGPHCLANNVFPQLCKVTQCPTDFSCKMIRGNPT
CIKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAAS
TIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASS
EPSSSAASSSAPSSASSSAPSS


Translated Amino Acid sequence (All Frames)
Frame A:
ihsil*l*kkesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSE
YTCKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRD
FVPYHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCP
E---

---mftke*rm*maslstrfqllq**krstlscq*cipttl*sysmsn*fll*nd*r*sn
ly*skttgttttllnlcraiism*srwndlysstkqlyqy*ipmlpissnlyssinyccf
nhcnncincrnynlcnycrynnwwnynwwfnf***ccflsr**rcllitikqccfkcrfk
*tik*rrfk*csilcfk*rsil

Frame B:
fiqfcnykkrnqiiiyiyknikkik*efyi*llfyf*lhyiyhqllvgvvaeivkvivqn
ihvnqievvhiyhlyhvvvrknfsvliviieivvmiyhvlktrelvkslrfgqvvnhiei
lyhiihqiqphvnh*vvkqevwnvnglnhhhvmellvaqefqdvlvimvavinvte*dvq
---

---CSPKNDECKWHRCPPGSSCFNSRNGPHCLANNVFPQLCKVTQCPTDFSCKMIRGNPT
CIKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAAS
TIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASS
EPSSSAASSSAPSSASSSAPSS

Frame C:
sfnfviikkgik*lyiyiki*kk*nenfifsfsfifnyiisitnfwlgwwqrl*kssfri
ym*ir*klcifticimlw*eriflc*s*s*kll**fimc*khenw*nl*dlvkl*tt*rf
ctisftkynhm*iirl*skrygm*mg*iitmlwnfllpknskmcwsswwrs*m*qnemsr
---

---vhqrmtnvngivvhqvpaasivetvhtvlpimyshnfvkllnvqlislvk*leviql
vlkqdhryhhhiaqlvqsyhqhvitle*fvfkyqaivpildshvahliqfvfihqllllq
plqqlhqlsqlqplqllqvqqlvelqlvvqllivvllpqpivalpphhhqavllqvplqv
nhqvaplqvvlhpllqvalhpl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLB244 (SLB244Q) /CSM/SL/SLB2-B/SLB244Q.Seq.d/ 1187 0.0
SLB171 (SLB171Q) /CSM/SL/SLB1-C/SLB171Q.Seq.d/ 1187 0.0
SLB132 (SLB132Q) /CSM/SL/SLB1-B/SLB132Q.Seq.d/ 1187 0.0
SLA236 (SLA236Q) /CSM/SL/SLA2-B/SLA236Q.Seq.d/ 1187 0.0
SHA862 (SHA862Q) /CSM/SH/SHA8-C/SHA862Q.Seq.d/ 1187 0.0
SHA704 (SHA704Q) /CSM/SH/SHA7-A/SHA704Q.Seq.d/ 1187 0.0
SFL452 (SFL452Q) /CSM/SF/SFL4-C/SFL452Q.Seq.d/ 1187 0.0
SFL286 (SFL286Q) /CSM/SF/SFL2-D/SFL286Q.Seq.d/ 1187 0.0
SFL239 (SFL239Q) /CSM/SF/SFL2-B/SFL239Q.Seq.d/ 1187 0.0
SFL215 (SFL215Q) /CSM/SF/SFL2-A/SFL215Q.Seq.d/ 1187 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(D13973) Dictyostelium discoideum gene for Dp87 protein, com... 1187 0.0 1
(AU052205) Dictyostelium discoideum slug cDNA, clone SLA236. 1187 0.0 1
(AU033627) Dictyostelium discoideum slug cDNA, clone SLB244. 1187 0.0 1
(AU033563) Dictyostelium discoideum slug cDNA, clone SLB171. 1187 0.0 1
(AU033525) Dictyostelium discoideum slug cDNA, clone SLB132. 1187 0.0 1
(BJ403598) Dictyostelium discoideum cDNA clone:dds25l16, 3' ... 1187 0.0 1
(BJ403422) Dictyostelium discoideum cDNA clone:dds25h01, 3' ... 1187 0.0 1
(BJ402954) Dictyostelium discoideum cDNA clone:dds18f23, 3' ... 1187 0.0 1
(BJ402948) Dictyostelium discoideum cDNA clone:dds18e23, 3' ... 1187 0.0 1
(BJ402896) Dictyostelium discoideum cDNA clone:dds18i17, 3' ... 1187 0.0 1
dna update 2009. 4.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 357 e-105
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 354 e-103
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 135 2e-34
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 100 2e-19
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 64 1e-08
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid... 62 4e-08
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 57 1e-06
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 57 1e-06
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName... 53 2e-05
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso... 49 4e-04
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM427 is

5' end seq. ID AFM427F
5' end seq.
>AFM427F.Seq
ATTCATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAA
TATAAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTA
TATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAA
TATACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAG
AAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCT
AAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGAT
TTTGTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGA
GGTATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGA
ATTCCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGAATGAGATGTCCA
GAAXXXXXXXXXX
Length of 5' end seq. 553
3' end seq. ID AFM427Z
3' end seq.
>AFM427Z.Seq
XXXXXXXXXXATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGTT
CCAGCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAAC
TTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAA
CTTGTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTAT
CATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATA
CTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTT
CAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTA
CAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAG
CCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAA
GTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTC
CATCCTCTG
Length of 3' end seq. 609
Connected seq. ID AFM427P
Connected seq.
>AFM427P.Seq
ATTCATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAA
TATAAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTA
TATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAA
TATACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAG
AAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCT
AAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGAT
TTTGTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGA
GGTATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGA
ATTCCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGAATGAGATGTCCA
GAA----------ATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAG
GTTCCAGCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCAC
AACTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATC
CAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGC
TATCATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCA
ATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTG
CTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAG
GTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCT
CAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTT
CAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCG
CTCCATCCTCTG
Length of connected seq. 1142
Full length Seq ID -
Full length Seq. -
Length of full length seq. -