VFE681
Library VF
(Link to library)
Clone ID VFE681
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID VFE681P
(Link to Original site)
Representative DNA sequence
>VFE681 (VFE681Q) /CSM/VF/VFE6-D/VFE681Q.Seq.d/
GTGTCCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATT
TGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACC
AATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTGCTGCTGA
TAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCAT
CTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAA
CTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCC
AACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATTACT
CTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTXXXXXXXX
XXTNTTTATTCAAGCNCTTGGGATTNTTGGGTNAAGATTNCCNCCCGTGAAGGNCCNACT
GCCTTCTTCAAAGGTGCTTTATCNAATGCCNTCANAGGNTCAGGTGGTGCNTTAGTTTTA
GTTATTTATGATGAAATCCNAAAACTTATGGGTTTTGAAGGTGGNGTTGGTTCTGAATAA
NAAAATCCNCAAGAAAAAAAACNGGNTTTTAACTAAAAAAAAAACATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
CPIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAAD
KQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENP
TKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVG---

---XYSSXWDXWVKIXXREGPTAFFKGALSNAXXGSGGALVLVIYDEIXKLMGFEGGVGS
E*xnpqekkxxfn*kkni


Translated Amino Acid sequence (All Frames)
Frame A:
vshi*lynyv*pkekrrific*rffnrwycrwclknycctn*tc*iiitssicfnsncc*
*tiqryrrlfc*sfkrtrchlimer*fsqcy*ifpnsss*lclqr*iqeilrqthc*rkp
nqifhw*fiiwwccwcnlitlclpirfcpysfsc*cw---

---xlfkxlgxlgxdxxp*rxxcllqrcfixcxxrxrwcxsfsyl**npktygf*rwxwf
*ixksxrkktgf*lkkkh

Frame B:
CPIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAAD
KQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENP
TKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVG---

---XYSSXWDXWVKIXXREGPTAFFKGALSNAXXGSGGALVLVIYDEIXKLMGFEGGVGS
E*xnpqekkxxfn*kkni

Frame C:
vpyiti*lcltkrkttylhllkil*svvlpvvsqklllhqlnvlnyyykfnllqlkllli
nntkvssivllefqknkvsshygevi*pmlldisqlklltlpskintrnsssdtllkktq
pnfslviyylvvllvqphyslfth*ilpvlv*llml---

---fiqalgixgxrxppvkxxlpsskvlyxmpsxxqvvx*f*lfmmksxnlwvlkvxlvl
nxkixkkknxxltkkkt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE681 (VFE681Q) /CSM/VF/VFE6-D/VFE681Q.Seq.d/ 1203 0.0
VHP837 (VHP837Q) /CSM/VH/VHP8-B/VHP837Q.Seq.d/ 928 0.0
VHL762 (VHL762Q) /CSM/VH/VHL7-C/VHL762Q.Seq.d/ 928 0.0
VHJ163 (VHJ163Q) /CSM/VH/VHJ1-C/VHJ163Q.Seq.d/ 928 0.0
VHH383 (VHH383Q) /CSM/VH/VHH3-D/VHH383Q.Seq.d/ 928 0.0
VHH216 (VHH216Q) /CSM/VH/VHH2-A/VHH216Q.Seq.d/ 928 0.0
VFO890 (VFO890Q) /CSM/VF/VFO8-D/VFO890Q.Seq.d/ 928 0.0
VFO766 (VFO766Q) /CSM/VF/VFO7-C/VFO766Q.Seq.d/ 928 0.0
VFO542 (VFO542Q) /CSM/VF/VFO5-B/VFO542Q.Seq.d/ 928 0.0
VFO479 (VFO479Q) /CSM/VF/VFO4-D/VFO479Q.Seq.d/ 928 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds. 928 0.0 2
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds. 805 0.0 3
AF480922|AF480922.1 Nyctotherus ovalis from Blaberus sp. var. Duesseldorf ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product. 70 1e-28 4
AF480920|AF480920.1 Nyctotherus ovalis from Periplaneta americana var. Bayer ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product. 78 1e-28 4
BG894033|BG894033.1 kt17c05.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 3e-28 4
BG893967|BG893967.1 kt22b03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 3e-28 4
BI323418|BI323418.1 kt71a10.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 3e-28 4
BG894099|BG894099.1 kt18c03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 3e-28 4
BG893792|BG893792.1 kt15d04.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 3e-28 4
BI397208|BI397208.1 kt58d01.y3 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 4e-28 4
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr... 293 3e-78
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03... 223 3e-57
(P12236) RecName: Full=ADP/ATP translocase 3; AltName: Full=Aden... 209 7e-53
(P32007) RecName: Full=ADP/ATP translocase 3; AltName: Full=Aden... 209 7e-53
AB209822_1(AB209822|pid:none) Homo sapiens mRNA for ADP,ATP carr... 209 7e-53
AL683870_3(AL683870|pid:none) Human DNA sequence from clone RP11... 209 7e-53
EF077712_1(EF077712|pid:none) Marsupenaeus japonicus ATP/ADP tra... 209 7e-53
DQ213940_1(DQ213940|pid:none) Taeniopygia guttata clone 0063P000... 209 9e-53
AJ719767_1(AJ719767|pid:none) Gallus gallus mRNA for hypothetica... 209 9e-53
AF480919_1(AF480919|pid:none) Nyctotherus ovalis from Periplanet... 208 1e-52
protein update 2009. 6.19
PSORT

psg: 0.81 gvh: 0.58 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for VFE681 is cyt

5' end seq. ID VFE681F
5' end seq.
>VFE681F.Seq
GTGTCCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATT
TGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACC
AATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTGCTGCTGA
TAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCAT
CTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAA
CTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCC
AACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATTACT
CTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGT--------
--
Length of 5' end seq. 472
3' end seq. ID VFE681Z
3' end seq.
>VFE681Z.Seq
----------TNTTTATTCAAGCNCTTGGGATTNTTGGGTNAAGATTNCCNCCCGTGAAG
GNCCNACTGCCTTCTTCAAAGGTGCTTTATCNAATGCCNTCANAGGNTCAGGTGGTGCNT
TAGTTTTAGTTATTTATGATGAAATCCNAAAACTTATGGGTTTTGAAGGTGGNGTTGGTT
CTGAATAANAAAATCCNCAAGAAAAAAAACNGGNTTTTAACTAAAAAAAAAACATA
Length of 3' end seq. 226
Connected seq. ID VFE681P
Connected seq.
>VFE681P.Seq
GTGTCCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATT
TGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACC
AATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTGCTGCTGA
TAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCAT
CTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAA
CTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCC
AACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATTACT
CTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGT--------
--TNTTTATTCAAGCNCTTGGGATTNTTGGGTNAAGATTNCCNCCCGTGAAGGNCCNACT
GCCTTCTTCAAAGGTGCTTTATCNAATGCCNTCANAGGNTCAGGTGGTGCNTTAGTTTTA
GTTATTTATGATGAAATCCNAAAACTTATGGGTTTTGAAGGTGGNGTTGGTTCTGAATAA
NAAAATCCNCAAGAAAAAAAACNGGNTTTTAACTAAAAAAAAAACATA
Length of connected seq. 698
Full length Seq ID -
Full length Seq. -
Length of full length seq. -