VFE664
Library VF
(Link to library)
Clone ID VFE664
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VFE664P
(Link to Original site)
Representative DNA sequence
>VFE664 (VFE664Q) /CSM/VF/VFE6-C/VFE664Q.Seq.d/
ATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTA
TTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTA
TTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAAC
GTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTTG
ATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAAC
ATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCA
AAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGA
AAGAAAXXXXXXXXXXAATTCAATTAAAGATGAAAAAGTTGCAGCCANGAATTTCAGATT
CAGATAAATCAACNATTGNATCTGAANCTGAAAGTGTACTCAAATGGTTAGAATCAAATC
AAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATC
CAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTG
GTACGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGA
ATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTNCTTAAAAAATGAATAAGTTAGTA
AA
sequence update 2001. 6. 1
Translated Amino Acid sequence
c*nksky*iiky*KMSSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTER
LIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFK
GETKVFSPEEISSMVLLKMKE---

---IQLKMKKLQPXISDSDKSTIXSEXESVLKWLESNQTAEKDEYEDKMKALEAVVNPIM
SKLYQEGGMPQGGGMPGGTSNDSPKSSNNKVDELD*rnfseenisik*ixlkne*vsk


Translated Amino Acid sequence (All Frames)
Frame A:
ivkirvnik*lnikkchqlvli*vqhihvlvfgkmivlkllqmikvieplhlmlhlliqn
v*lvmlqriklq*iqpiqylmlnv*lvvnlvtkkfkvi*nighsklfqrmvishifklns
kvklkfshqkkslqwys*k*kk---

---nsikdekvaaxnfrfr*inxxi*x*kctqmvriksnrrkg*i*r*deslrsscqsnh
e*tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgkhlyqidxlkk*is**

Frame B:
llk*e*ilnn*ilknvinwy*frynifmcwclak*sc*nyck*sr**nhsilcciy*yrt
fnw*cckesscnesnqysi*c*tfnws*i**qrssk*yetlaiqsyskgw**atyss*iq
r*n*sfltrrnlfngtlkner---

---IQLKMKKLQPXISDSDKSTIXSEXESVLKWLESNQTAEKDEYEDKMKALEAVVNPIM
SKLYQEGGMPQGGGMPGGTSNDSPKSSNNKVDELD*rnfseenisik*ixlkne*vsk

Frame C:
c*nksky*iiky*KMSSIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTER
LIGDAAKNQVAMNPTNTVFDAKRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFK
GETKVFSPEEISSMVLLKMKE---

---fn*r*kscsxefqiqinqxlxlxlkvysng*nqikpqkrmnmkir*kp*kqlsiqs*
vnsikkevchkvvvcqvvrqmihqrvqttk*tn*idgifqrktslsnrfx*kmnklv

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/ 753 0.0
VHQ240 (VHQ240Q) /CSM/VH/VHQ2-B/VHQ240Q.Seq.d/ 753 0.0
VHP786 (VHP786Q) /CSM/VH/VHP7-D/VHP786Q.Seq.d/ 753 0.0
VHP783 (VHP783Q) /CSM/VH/VHP7-D/VHP783Q.Seq.d/ 753 0.0
VHP719 (VHP719Q) /CSM/VH/VHP7-A/VHP719Q.Seq.d/ 753 0.0
VHP716 (VHP716Q) /CSM/VH/VHP7-A/VHP716Q.Seq.d/ 753 0.0
VHP627 (VHP627Q) /CSM/VH/VHP6-B/VHP627Q.Seq.d/ 753 0.0
VHP558 (VHP558Q) /CSM/VH/VHP5-C/VHP558Q.Seq.d/ 753 0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/ 753 0.0
VHP420 (VHP420Q) /CSM/VH/VHP4-A/VHP420Q.Seq.d/ 753 0.0

own update 2002.12.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70). 753 0.0 4
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,. 573 0.0 4
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds. 252 8e-98 2
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 252 3e-96 2
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds. 145 6e-59 6
AZ534967|AZ534967.1 ENTCP87TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 182 2e-54 5
BH157764|BH157764.1 ENTRX32TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 182 2e-54 5
BH160786|BH160786.1 ENTQX06TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 182 2e-54 5
AZ550378|AZ550378.1 ENTEY63TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 182 2e-54 5
AZ543781|AZ543781.1 ENTFH69TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 182 3e-54 5
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 253 5e-66
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 253 5e-66
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 234 2e-60
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 234 2e-60
AY495382_1(AY495382|pid:none) Trypanosoma rangeli isolate Tre he... 229 1e-58
A25398(A25398)dnaK-type molecular chaperone - Trypanosoma brucei 227 3e-58
(P11145) RecName: Full=Heat shock 70 kDa protein 4; AltName: Ful... 227 3e-58
EF442767_1(EF442767|pid:none) Trypanosoma rangeli isolate H14 cl... 226 5e-58
M26595_1(M26595|pid:none) T.cruzi heat shock protein (HSP70) gen... 226 6e-58
FJ168549_2(FJ168549|pid:none) Bodo saltans clone fosmid 16K02, c... 226 6e-58
protein update 2009. 6.19
PSORT

psg: 0.87 gvh: 0.35 alm: 0.46 top: 0.27 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFE664 is cyt

5' end seq. ID VFE664F
5' end seq.
>VFE664F.Seq
ATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTA
TTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTA
TTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAAC
GTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTTG
ATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAAC
ATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCA
AAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGA
AAGAAA----------
Length of 5' end seq. 426
3' end seq. ID VFE664Z
3' end seq.
>VFE664Z.Seq
----------AATTCAATTAAAGATGAAAAAGTTGCAGCCANGAATTTCAGATTCAGATA
AATCAACNATTGNATCTGAANCTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCG
CAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCA
TGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTACGT
CAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTT
CAGAGGAAAACATCTCTATCAAATAGATTTNCTTAAAAAATGAATAAGTTAGTAAA
Length of 3' end seq. 346
Connected seq. ID VFE664P
Connected seq.
>VFE664P.Seq
ATTGTTAAAATAAGAGTAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTA
TTGATTTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTA
TTGCAAATGATCAAGGTAATAGAACCACTCCATCTTATGTTGCATTTACTGATACAGAAC
GTTTAATTGGTGATGCTGCAAAGAATCAAGTTGCAATGAATCCAACCAATACAGTATTTG
ATGCTAAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAAC
ATTGGCCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCA
AAGGTGAAACTAAAGTTTTCTCACCAGAAGAAATCTCTTCAATGGTACTCTTAAAAATGA
AAGAAA----------AATTCAATTAAAGATGAAAAAGTTGCAGCCANGAATTTCAGATT
CAGATAAATCAACNATTGNATCTGAANCTGAAAGTGTACTCAAATGGTTAGAATCAAATC
AAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATC
CAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTG
GTACGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGA
ATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTNCTTAAAAAATGAATAAGTTAGTA
AA
Length of connected seq. 772
Full length Seq ID -
Full length Seq. -
Length of full length seq. -