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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE655
Library VF
(Link to library)
Clone ID VFE655
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16602-1
Original site URL
Representative seq. ID VFE655P
(Link to Original site)
Representative DNA sequence 
>VFE655 (VFE655Q) /CSM/VF/VFE6-C/VFE655Q.Seq.d/
AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG
TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT
GATCGTCGCCGAAGCTGATTTTGTAGGTTCAAGCCAATTACAAAAGATCAGAAAATCCAT
CCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTGA
TTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCTG
TATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTGT
TGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTCC
AACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAXXXXXXXXXXTNGTC
AATGAAGTCCACATCATTAAAACCGGTCAAAAAGTTGGTGCTTCAGAAGCTACCCTCTTA
CAAAAATTGAACATCAAACCATTCACCTATGGTTTAGAACCAAAAATCATCTATGATGCT
GGTGCCTGTTATTCACCATCTATCTCTGAAGAAGATCTCATCAACAAATTCAAACAAGGT
ATCTTCAACATTGCTGCCATCTCCTTGGAAATTGGTTACCCAACCGTTGCTTCAATTCCA
CATTCAGTCATGAATGCTTTCAAGAATTTATTAGCCATCTCATTCGAAACCTCTTACACT
TTCGATGCTGCTGAAAAATTCAAATCAGCCGCTGCTGCTGCCCCAGTTGCTGCCGCTCCA
TCCGCTGCTGCTCCAGCTGCCGCTGCCAAGAAAGTCGTCGTCGAAGAAAAGAAAGAAGAA
TCAGATGATGATATGGGTATGGGTCTCTTNNATTAAGCATTTGAATAAATAAATTTTTTT
TTTCAAAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
vsvllyl*ILIHNKMSGAGSKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSI
RGIGAVLMGKKTMIRKVIRDLADSKPELDALNTYLKQNTCIIFCKDNIAEVKRVINTQRV
GAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDL---

---VNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSISEEDLINK
FKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAAAAPV
AAAPSAAAPAAAAKKVVVEEKKEESDDDMGMGLXX*afe*infffqk
Translated Amino Acid sequence (All Frames) 
Frame A:
slsitlslnshtqqdvrgrk*kkerfh*ksyqafhhlrqndrrrs*fcrfkpitkdqkih
pwyrcrshg*edydp*ghp*fs*f*trtrclkyllktkhlyhfl*r*hr*s*tcyqystc
wcps*srcfrskrcyhpsrsnwygtnpnlfpprfk---

---xsmkstslkpvkklvlqklpsykn*tsnhspmv*nqkssmmlvpvihhlslkkisst
nsnkvsstllpspwklvtqpllqfhiqs*mlsriy*pshskpltlsmllknsnqplllpq
llplhplllqlplprkssskkrkknqmmiwvwvsxikhlnk*ifffkk

Frame B:
vsvllyl*ILIHNKMSGAGSKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSI
RGIGAVLMGKKTMIRKVIRDLADSKPELDALNTYLKQNTCIIFCKDNIAEVKRVINTQRV
GAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDL---

---xq*sphh*nrskswcfrsypltkiehqtihlwfrtknhl*cwcllftiyl*rrshqq
iqtrylqhcchllgnwlpnrcfnstfshecfqefishlirnllhfrcc*kiqisrcccps
ccrsirccsscrcqesrrrrkerrir**ygygslxlsi*inkfffskn

Frame C:
sqyyfifkfsyttrcpgqevkertfslkklpsfsplttk*sspklil*vqanykrsenps
vvsvpfswvrrl*svrssvi*lilnqnsmp*ipt*nktpvsfsvkitslklnvlsilnvl
vpqlkqvfslqtmlssqpvqlvwnqpkplsski*---

---VNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSISEEDLINK
FKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAAAAPV
AAAPSAAAPAAAAKKVVVEEKKEESDDDMGMGLXX*afe*infffqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE655 (VFE655Q) /CSM/VF/VFE6-C/VFE655Q.Seq.d/                       1530   0.0
VHN294 (VHN294Q) /CSM/VH/VHN2-D/VHN294Q.Seq.d/                        922   0.0
VHM575 (VHM575Q) /CSM/VH/VHM5-D/VHM575Q.Seq.d/                        922   0.0
VHD876 (VHD876Q) /CSM/VH/VHD8-D/VHD876Q.Seq.d/                        922   0.0
VFO671 (VFO671Q) /CSM/VF/VFO6-C/VFO671Q.Seq.d/                        922   0.0
VFN504 (VFN504Q) /CSM/VF/VFN5-A/VFN504Q.Seq.d/                        922   0.0
VFM508 (VFM508Q) /CSM/VF/VFM5-A/VFM508Q.Seq.d/                        922   0.0
VFL888 (VFL888Q) /CSM/VF/VFL8-D/VFL888Q.Seq.d/                        922   0.0
VFH184 (VFH184Q) /CSM/VF/VFH1-D/VFH184Q.Seq.d/                        922   0.0
VFG702 (VFG702Q) /CSM/VF/VFG7-A/VFG702Q.Seq.d/                        922   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X56194|X56194.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P0.   823  0.0  4
CD203589|CD203589.1 Ls_AM1_10H07_T7 Litomosoides sigmodontis adult male 1 Litomosoides sigmodontis cDNA clone Ls_AM1_10H07 5', mRNA sequence.    56  4e-05  2
AY091201|AY091201.1 Arabidopsis thaliana putative 60S acidic ribosomal protein (At3g11250) mRNA, complete cds.    44  0.002  2
BI073648|BI073648.1 kt33c04.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RLA0_CHICK P47826 60S ACIDIC RIBOSOMAL PROTEIN P0 ;, mRNA sequence.    34  0.002  4
BI323869|BI323869.1 kt46a06.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RLA0_CAEEL Q93572 60S ACIDIC RIBOSOMAL PROTEIN P0. [1] ;, mRNA sequence.    34  0.002  4
AY056150|AY056150.1 Arabidopsis thaliana putative 60S acidic ribosomal protein (At3g11250) mRNA, complete cds.    44  0.002  2
AY087728|AY087728.1 Arabidopsis thaliana clone 38036 mRNA, complete sequence.    44  0.002  2
BI323537|BI323537.1 kt72e09.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RLA0_CAEEL Q93572 60S ACIDIC RIBOSOMAL PROTEIN P0. [1] ;, mRNA sequence.    34  0.003  4
BQ474741|BQ474741.1 biphyllus5a09.g Biphyllus lunatus cDNA Biphyllus lunatus cDNA clone biphyllus5a09 3', mRNA sequence.    38  0.003  3
BI450520|BI450520.1 kt26h09.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RLA0_CAEEL Q93572 60S ACIDIC RIBOSOMAL PROTEIN P0. [1] ;, mRNA sequence.    34  0.003  4
dna update 2003. 9.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P22685) RecName: Full=60S acidic ribosomal protein P0;               275   e-128
R5DOP0(S14012) ribosomal protein P0 - slime mold (Dictyostelium ...   271   e-127
AY857422_1(AY857422|pid:none) Suberites domuncula L10e/P0 mRNA, ...   131   2e-55
EU069460_1(EU069460|pid:none) Stylophora pistillata 60S acidic r...   126   1e-54
(Q9U3U0) RecName: Full=60S acidic ribosomal protein P0;         ...   120   2e-53
AF390866_1(AF390866|pid:none) Toxoplasma gondii ribosomal phosph...   121   2e-53
AY217739_1(AY217739|pid:none) Toxoplasma gondii ribosomal P prot...   121   2e-53
AJ457827_1(AJ457827|pid:none) Bombyx mori mRNA for ribosomal P0 ...   124   1e-52
AB284186_1(AB284186|pid:none) Neospora caninum mRNA for ribosoma...   122   2e-52
(P19889) RecName: Full=60S acidic ribosomal protein P0; AltName:...   119   2e-52
protein update 2009. 6.19
PSORT 

 psg: 0.62  gvh: 0.44  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VFE655 is cyt
5' end seq. ID VFE655F
5' end seq. 
>VFE655F.Seq
AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG
TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT
GATCGTCGCCGAAGCTGATTTTGTAGGTTCAAGCCAATTACAAAAGATCAGAAAATCCAT
CCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTGA
TTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCTG
TATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTGT
TGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTCC
AACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAA----------
Length of 5' end seq. 465
3' end seq. ID VFE655Z
3' end seq. 
>VFE655Z.Seq
----------TNGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAGTTGGTGCTTCA
GAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTTTAGAACCAAAA
ATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCTGAAGAAGATCTCATCAAC
AAATTCAAACAAGGTATCTTCAACATTGCTGCCATCTCCTTGGAAATTGGTTACCCAACC
GTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAATTTATTAGCCATCTCATTC
GAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCAGCCGCTGCTGCTGCCCCA
GTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCCAAGAAAGTCGTCGTCGAA
GAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTCTTNNATTAAGCATTTGAA
TAAATAAATTTTTTTTTTCAAAAAAC
Length of 3' end seq. 496
Connected seq. ID VFE655P
Connected seq. 
>VFE655P.Seq
AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG
TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT
GATCGTCGCCGAAGCTGATTTTGTAGGTTCAAGCCAATTACAAAAGATCAGAAAATCCAT
CCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTGA
TTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCTG
TATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTGT
TGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTCC
AACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAA----------TNGTC
AATGAAGTCCACATCATTAAAACCGGTCAAAAAGTTGGTGCTTCAGAAGCTACCCTCTTA
CAAAAATTGAACATCAAACCATTCACCTATGGTTTAGAACCAAAAATCATCTATGATGCT
GGTGCCTGTTATTCACCATCTATCTCTGAAGAAGATCTCATCAACAAATTCAAACAAGGT
ATCTTCAACATTGCTGCCATCTCCTTGGAAATTGGTTACCCAACCGTTGCTTCAATTCCA
CATTCAGTCATGAATGCTTTCAAGAATTTATTAGCCATCTCATTCGAAACCTCTTACACT
TTCGATGCTGCTGAAAAATTCAAATCAGCCGCTGCTGCTGCCCCAGTTGCTGCCGCTCCA
TCCGCTGCTGCTCCAGCTGCCGCTGCCAAGAAAGTCGTCGTCGAAGAAAAGAAAGAAGAA
TCAGATGATGATATGGGTATGGGTCTCTTNNATTAAGCATTTGAATAAATAAATTTTTTT
TTTCAAAAAAC
Length of connected seq. 961
Full length Seq ID -
Full length Seq. -
Length of full length seq. -