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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE637
Library VF
(Link to library)
Clone ID VFE637
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID VFE637Z
(Link to Original site)
Representative DNA sequence 
>VFE637 (VFE637Q) /CSM/VF/VFE6-B/VFE637Q.Seq.d/
XXXXXXXXXXGNTGGTAAANCAATCNCTTTAGAAGTTGAAGGTTNTGAAAACATTGNAAN
TGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCNCCAGATCAACAAAGATTAATCT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---GKXIXLEVEGXENIXXVKAKIQDKEGIPPDQQRLI
Translated Amino Acid sequence (All Frames) 
Frame A:
---xvxqsl*klkvxktlxxlkprskikkvfxqinkd*s


Frame B:
---w*xnxfrs*rx*khxxc*sqdpr*rrysxrstkin


Frame C:
---GKXIXLEVEGXENIXXVKAKIQDKEGIPPDQQRLI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE637 (VFE637Q) /CSM/VF/VFE6-B/VFE637Q.Seq.d/                        176   4e-44
VFK832 (VFK832Q) /CSM/VF/VFK8-B/VFK832Q.Seq.d/                        168   1e-41
VFK831 (VFK831Q) /CSM/VF/VFK8-B/VFK831Q.Seq.d/                        168   1e-41
VFI474 (VFI474Q) /CSM/VF/VFI4-D/VFI474Q.Seq.d/                        168   1e-41
VFG440 (VFG440Q) /CSM/VF/VFG4-B/VFG440Q.Seq.d/                        168   1e-41
VFE764 (VFE764Q) /CSM/VF/VFE7-C/VFE764Q.Seq.d/                        168   1e-41
SSM248 (SSM248Q) /CSM/SS/SSM2-B/SSM248Q.Seq.d/                        168   1e-41
SSI785 (SSI785Q) /CSM/SS/SSI7-D/SSI785Q.Seq.d/                        168   1e-41
SSI334 (SSI334Q) /CSM/SS/SSI3-B/SSI334Q.Seq.d/                        168   1e-41
SSH752 (SSH752Q) /CSM/SS/SSH7-C/SSH752Q.Seq.d/                        168   1e-41
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   168  8e-39  1
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   168  8e-39  1
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.   121  2e-24  1
M23750|M23750.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUBV20.   121  2e-24  1
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   113  4e-22  1
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   113  4e-22  1
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   109  7e-21  1
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   100  7e-18  1
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   100  7e-18  1
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   100  7e-18  1
dna update 2003. 9.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M23750_1(M23750|pid:none) D.discoideum ubiquitin mRNA, complete ...    59   4e-08
AC115584_9(AC115584|pid:none) Dictyostelium discoideum chromosom...    59   4e-08
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...    59   4e-08
(Q55DZ5) RecName: Full=Ubiquitin;                                      59   4e-08
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...    59   4e-08
M23749_1(M23749|pid:none) D.discoideum ubiquitin mRNA, complete ...    59   4e-08
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...    59   4e-08
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...    59   4e-08
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...    59   4e-08
AM117576_1(AM117576|pid:none) Alvinella caudata partial gene for...    57   2e-07
protein update 2009. 6.19
PSORT 

 psg: 0.75  gvh: 0.24  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VFE637 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFE637Z
3' end seq. 
>VFE637Z.Seq
----------GNTGGTAAANCAATCNCTTTAGAAGTTGAAGGTTNTGAAAACATTGNAAN
TGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCNCCAGATCAACAAAGATTAATCT
Length of 3' end seq. 109
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -