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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE615
Library VF
(Link to library)
Clone ID VFE615
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID VFE615F
(Link to Original site)
Representative DNA sequence 
>VFE615 (VFE615Q) /CSM/VF/VFE6-A/VFE615Q.Seq.d/
GTTGTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTC
ATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGC
ACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTGCTGC
TGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGT
CATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCT
TAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAA
CCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATT
ACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGG
TTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGAXXX
XXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LCSIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAA
DKQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKEN
PTKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYKR--
-
Translated Amino Acid sequence (All Frames) 
Frame A:
vvfhi*lynyv*pkekrrific*rffnrwycrwclknycctn*tc*iiitssicfnsncc
**tiqryrrlfc*sfkrtrchlimer*fsqcy*ifpnsss*lclqr*iqeilrqthc*rk
pnqifhw*fiiwwccwcnlitlclpirfcpysfsc*cwywfsssihwfr*lylfnlqe--
-


Frame B:
LCSIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAA
DKQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKEN
PTKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYKR--
-


Frame C:
cvpyiti*lcltkrkttylhllkil*svvlpvvsqklllhqlnvlnyyykfnllqlklll
inntkvssivllefqknkvsshygevi*pmlldisqlklltlpskintrnsssdtllkkt
qpnfslviyylvvllvqphyslfth*ilpvlv*llmlvlvqlvnslv*vtvslqstre--
-
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL762 (VHL762Q) /CSM/VH/VHL7-C/VHL762Q.Seq.d/                       1065   0.0
VHH383 (VHH383Q) /CSM/VH/VHH3-D/VHH383Q.Seq.d/                       1065   0.0
VHH216 (VHH216Q) /CSM/VH/VHH2-A/VHH216Q.Seq.d/                       1065   0.0
VFO479 (VFO479Q) /CSM/VF/VFO4-D/VFO479Q.Seq.d/                       1065   0.0
VFN227 (VFN227Q) /CSM/VF/VFN2-B/VFN227Q.Seq.d/                       1065   0.0
VFM845 (VFM845Q) /CSM/VF/VFM8-B/VFM845Q.Seq.d/                       1065   0.0
VFM791 (VFM791Q) /CSM/VF/VFM7-D/VFM791Q.Seq.d/                       1065   0.0
VFM583 (VFM583Q) /CSM/VF/VFM5-D/VFM583Q.Seq.d/                       1065   0.0
VFL424 (VFL424Q) /CSM/VF/VFL4-A/VFL424Q.Seq.d/                       1065   0.0
VFK722 (VFK722Q) /CSM/VF/VFK7-A/VFK722Q.Seq.d/                       1065   0.0
own update 2002.12.17
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds.  1065  0.0  1
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds.   928  0.0  2
AF480922|AF480922.1 Nyctotherus ovalis from Blaberus sp. var. Duesseldorf ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product.    70  4e-29  4
AF480920|AF480920.1 Nyctotherus ovalis from Periplaneta americana var. Bayer ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product.    78  4e-29  4
BG894033|BG894033.1 kt17c05.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  1e-28  4
BG893967|BG893967.1 kt22b03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  1e-28  4
BI323418|BI323418.1 kt71a10.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  1e-28  4
BG894099|BG894099.1 kt18c03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  1e-28  4
BG893792|BG893792.1 kt15d04.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  1e-28  4
BI397208|BI397208.1 kt58d01.y3 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  2e-28  4
dna update 2003. 9.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr...   333   2e-90
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03...   248   6e-65
BC061600_1(BC061600|pid:none) Xenopus tropicalis solute carrier ...   232   4e-60
BC067329_1(BC067329|pid:none) Danio rerio solute carrier family ...   229   5e-59
AF480919_1(AF480919|pid:none) Nyctotherus ovalis from Periplanet...   229   5e-59
AF401758_1(AF401758|pid:none) Ethmostigmus rubripes ADP-ATP tran...   228   8e-59
(P02722) RecName: Full=ADP/ATP translocase 1; AltName: Full=Aden...   228   8e-59
AF480921_1(AF480921|pid:none) Nyctotherus ovalis from Blaberus s...   228   8e-59
AB183682_1(AB183682|pid:none) Takifugu rubripes ANTs254 mRNA for...   227   1e-58
EF077712_1(EF077712|pid:none) Marsupenaeus japonicus ATP/ADP tra...   226   2e-58
protein update 2009. 6.19
PSORT 

 psg: 0.81  gvh: 0.58  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VFE615 is cyt
5' end seq. ID VFE615F
5' end seq. 
>VFE615F.Seq
GTTGTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTC
ATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGC
ACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTGCTGC
TGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGT
CATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCT
TAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAA
CCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCTCATT
ACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTACTGG
TTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGA---
-------
Length of 5' end seq. 537
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -