AFM417
Library AF
(Link to library)
Clone ID AFM417
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM417P
(Link to Original site)
Representative DNA sequence
>AFM417 (AFM417Q) /CSM/AF/AFM4-A/AFM417Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCNNCTTTTTTGAAAAAAAAAA
XXXXXXXXXXGNNNNNNNNNNNNNTGGTANNNNNTNNNTNTTNNANTTNAGGNTNNNNTA
ATATTNNNNNTGTTNNNNNNAANATTNAANNNAAANAAGGTATNNCNNCANNNCANNAAA
NATTNATTTTNNNTGGTNNNCAATTANAANATGGTNGTNCTNTNTNTGATTNCAACATTC
AAAAGGAATNCNCTNTCCATTTAGTCNTCAGATTAAGAGGTGGTATGCAAATTTTTGTCA
AAACCCTCACTGGTAAGACTATTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATG
TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCG
CCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCA
CTNTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTG
GTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAA
TTCAAGACAAAGAAGGTATTCCA
sequence update 2009. 4. 3
Translated Amino Acid sequence
ihfyytnikfifyffiycnis*KKKKKKKXKXSXFLKKK---

---XXXXXVXXXXXXXGXXNIXXVXXXIXXKXGXXXXXXXXIXXGXQLXXGXXXXDXNIQ
KEXXXHLVXRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFA
GKQLEDGRTLSDYNIQKESTXHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKI
QDKEGIP


Translated Amino Acid sequence (All Frames)
Frame A:
kfifiiqilnsyfiflyivtfhkkkkkkkxlkxxlf*kkk---

---xxxxxgxxxxxxxrxx*yxxcxxxxxxxxryxxxxxxixfxwxxixxwxxxx*xqhs
kgxxxpfsxqikrwyanfcqnphw*dyytxs*rf**h*ec*sqnprqrrystrsttshfr
r*tiggwsysl*lqhskgihxpfssqikrwyanfcknshw*nhytrs*r**qh*ecknkn
srqrrys

Frame B:
nsfllyky*ihilffyil*hfikkkkkkkx*kxxffekk---

---XXXXXVXXXXXXXGXXNIXXVXXXIXXKXGXXXXXXXXIXXGXQLXXGXXXXDXNIQ
KEXXXHLVXRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFA
GKQLEDGRTLSDYNIQKESTXHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKI
QDKEGIP

Frame C:
ihfyytnikfifyffiycnis*KKKKKKKXKXSXFLKKK---

---xxxxwxxxxxxxxxxxixxxxxxxxxxxkvxxxxxkxxfxxvxnxxmvvlxxixtfk
rnxlsi*ssd*evvckflskpslvrllhxklkvlitlrmlkpksktkkvfhqinnvsfsp
vnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkf
ktkkvf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK183 (VFK183Q) /CSM/VF/VFK1-D/VFK183Q.Seq.d/ 755 0.0
SFK754 (SFK754Q) /CSM/SF/SFK7-C/SFK754Q.Seq.d/ 755 0.0
SFI843 (SFI843Q) /CSM/SF/SFI8-B/SFI843Q.Seq.d/ 755 0.0
SFI410 (SFI410Q) /CSM/SF/SFI4-A/SFI410Q.Seq.d/ 755 0.0
SFI270 (SFI270Q) /CSM/SF/SFI2-C/SFI270Q.Seq.d/ 755 0.0
SFG820 (SFG820Q) /CSM/SF/SFG8-A/SFG820Q.Seq.d/ 755 0.0
SFD815 (SFD815Q) /CSM/SF/SFD8-A/SFD815Q.Seq.d/ 755 0.0
SFD545 (SFD545Q) /CSM/SF/SFD5-B/SFD545Q.Seq.d/ 755 0.0
SFB478 (SFB478Q) /CSM/SF/SFB4-D/SFB478Q.Seq.d/ 755 0.0
CHD793 (CHD793Q) /CSM/CH/CHD7-D/CHD793Q.Seq.d/ 755 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ433417) Dictyostelium discoideum cDNA clone:ddv21e21, 3' ... 755 0.0 1
(BJ402800) Dictyostelium discoideum cDNA clone:dds18f12, 3' ... 755 0.0 1
(BJ402668) Dictyostelium discoideum cDNA clone:dds17k18, 3' ... 755 0.0 1
(BJ402466) Dictyostelium discoideum cDNA clone:dds17d04, 3' ... 755 0.0 1
(BJ401255) Dictyostelium discoideum cDNA clone:dds22l13, 3' ... 755 0.0 1
(BJ400632) Dictyostelium discoideum cDNA clone:dds14h06, 3' ... 755 0.0 1
(BJ399993) Dictyostelium discoideum cDNA clone:dds8i11, 3' e... 755 0.0 1
(BJ399959) Dictyostelium discoideum cDNA clone:dds8n04, 3' e... 755 0.0 1
(BJ399059) Dictyostelium discoideum cDNA clone:dds3l20, 3' e... 755 0.0 1
(BJ378089) Dictyostelium discoideum cDNA clone:ddc27i05, 3' ... 755 0.0 1
dna update 2009. 4.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 259 6e-68
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 259 6e-68
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 259 6e-68
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos... 257 2e-67
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 257 2e-67
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 244 2e-63
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526... 244 2e-63
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 244 2e-63
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 244 2e-63
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 244 2e-63
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM417 is

5' end seq. ID AFM417F
5' end seq.
>AFM417F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCNNCTTTTTTGAAAAAAAAAA
XXXXXXXXXX
Length of 5' end seq. 130
3' end seq. ID AFM417Z
3' end seq.
>AFM417Z.Seq
XXXXXXXXXXGNNNNNNNNNNNNNTGGTANNNNNTNNNTNTTNNANTTNAGGNTNNNNTA
ATATTNNNNNTGTTNNNNNNAANATTNAANNNAAANAAGGTATNNCNNCANNNCANNAAA
NATTNATTTTNNNTGGTNNNCAATTANAANATGGTNGTNCTNTNTNTGATTNCAACATTC
AAAAGGAATNCNCTNTCCATTTAGTCNTCAGATTAAGAGGTGGTATGCAAATTTTTGTCA
AAACCCTCACTGGTAAGACTATTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATG
TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCG
CCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCA
CTNTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTG
GTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAA
TTCAAGACAAAGAAGGTATTCCA
Length of 3' end seq. 563
Connected seq. ID AFM417P
Connected seq.
>AFM417P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCNNCTTTTTTGAAAAAAAAAA
----------GNNNNNNNNNNNNNTGGTANNNNNTNNNTNTTNNANTTNAGGNTNNNNTA
ATATTNNNNNTGTTNNNNNNAANATTNAANNNAAANAAGGTATNNCNNCANNNCANNAAA
NATTNATTTTNNNTGGTNNNCAATTANAANATGGTNGTNCTNTNTNTGATTNCAACATTC
AAAAGGAATNCNCTNTCCATTTAGTCNTCAGATTAAGAGGTGGTATGCAAATTTTTGTCA
AAACCCTCACTGGTAAGACTATTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATG
TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCG
CCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCA
CTNTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTG
GTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAA
TTCAAGACAAAGAAGGTATTCCA
Length of connected seq. 673
Full length Seq ID -
Full length Seq. -
Length of full length seq. -