VFE585
Library VF
(Link to library)
Clone ID VFE585
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16281-1
Original site URL
Representative seq. ID VFE585F
(Link to Original site)
Representative DNA sequence
>VFE585 (VFE585Q) /CSM/VF/VFE5-D/VFE585Q.Seq.d/
AATTTATTTATTTATTCAAATATATATTATATTAAATAAAATGTTTGCCAGATTAGCCAG
AGCTAACTACTTAAAGAATTCAGGTAGATACTTCTCTACTGAGCCAACCTTAAAAGAAAG
ATTAGTTCAAATCATCCCAGGTAAAATTGAACAAGTTAAACAATTAAAAACTGAACATGG
TGACAAAATCATTGGTACCTGTACTGTTGCACAAGCTTATGGTGGTATGAGATCAGTTAA
ATCATTAGTTACTGAAACATCATCATTAGATCCAGAAGAAGGCATTAGATTCCGTGGTTT
AACAATCCCAGAATGTCAAGAGAAATTACCAAAAGCTCCAGGTGGTGCTGAACCATTACC
AGAAGGTATTTTATGGTTACTTTTAACTGGTGAAGTTCCAACTGAATCACAAGTTAAAAC
CTTATCAAAAGAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
IYLFIQIYIILNKMFARLARANYLKNSGRYFSTEPTLKERLVQIIPGKIEQVKQLKTEHG
DKIIGTCTVAQAYGGMRSVKSLVTETSSLDPEEGIRFRGLTIPECQEKLPKAPGGAEPLP
EGILWLLLTGEVPTESQVKTLSK---


Translated Amino Acid sequence (All Frames)
Frame A:
nlfiysniyyik*nvcqisqs*llkefr*illy*anlkrkissnhpr*n*ts*tikn*tw
*qnhwylycctslwwyeis*iisy*niiirsrrrh*ipwfnnprmsreitkssrwc*tit
rryfmvtfnw*ssn*its*nlik---


Frame B:
IYLFIQIYIILNKMFARLARANYLKNSGRYFSTEPTLKERLVQIIPGKIEQVKQLKTEHG
DKIIGTCTVAQAYGGMRSVKSLVTETSSLDPEEGIRFRGLTIPECQEKLPKAPGGAEPLP
EGILWLLLTGEVPTESQVKTLSK---


Frame C:
fiylfkyily*ikclpd*peltt*riqvdtsllsqp*kkd*fkssqvklnklnn*klnmv
tkslvpvllhklmvv*dqlnh*llkhhh*iqkkaldsvv*qsqnvkrnyqklqvvlnhyq
kvfygyf*lvkfqlnhklkpyqk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO812 (VFO812Q) /CSM/VF/VFO8-A/VFO812Q.Seq.d/ 856 0.0
VFO296 (VFO296Q) /CSM/VF/VFO2-D/VFO296Q.Seq.d/ 856 0.0
VFO156 (VFO156Q) /CSM/VF/VFO1-C/VFO156Q.Seq.d/ 856 0.0
VFO142 (VFO142Q) /CSM/VF/VFO1-B/VFO142Q.Seq.d/ 856 0.0
VFN189 (VFN189Q) /CSM/VF/VFN1-D/VFN189Q.Seq.d/ 856 0.0
VFM621 (VFM621Q) /CSM/VF/VFM6-A/VFM621Q.Seq.d/ 856 0.0
VFM247 (VFM247Q) /CSM/VF/VFM2-B/VFM247Q.Seq.d/ 856 0.0
VFK833 (VFK833Q) /CSM/VF/VFK8-B/VFK833Q.Seq.d/ 856 0.0
VFK780 (VFK780Q) /CSM/VF/VFK7-D/VFK780Q.Seq.d/ 856 0.0
VFK510 (VFK510Q) /CSM/VF/VFK5-A/VFK510Q.Seq.d/ 856 0.0

own update 2001.11.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 432 0.0 5
AY126274|AY126274.1 Candida krusei citrate synthase (CS1) gene, complete cds. 54 4e-11 3
AX536976|AX536976.1 Sequence 577 from Patent WO02064766. 76 4e-10 1
AL429256|AL429256.1 clone BA0AB030F08 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 64 7e-10 2
AY145050|AY145050.1 Kluyveromyces lactis clone P2263 CIT1 gene, partial cds. 64 1e-09 2
BE579168|BE579168.1 kq23d01.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:T20G5.2 CE00513 PROBABLE CITRATE SYNTHASE, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 34 1e-05 4
BE581402|BE581402.1 kq45d02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:T20G5.2 CE00513 PROBABLE CITRATE SYNTHASE, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 34 2e-04 4
CD450751|CD450751.1 USDA-FP_102714 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-37_E02 5', mRNA sequence. 46 5e-04 2
CD526170|CD526170.1 kw31d09.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:CISY_CAEEL P34575 PROBABLE CITRATE SYNTHASE, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 46 7e-04 3
CB832670|CB832670.1 USDA-FP_100461 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-07_A07 5', mRNA sequence. 46 0.001 2
dna update 2003. 9.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q553V1) RecName: Full=Citrate synthase, mitochondrial; ... 260 9e-69
AC116305_8(AC116305|pid:none) Dictyostelium discoideum chromosom... 259 2e-68
FN392319_422(FN392319|pid:none) Pichia pastoris GS115 chromosome... 159 2e-38
FM992695_315(FM992695|pid:none) Candida dubliniensis CD36 chromo... 158 6e-38
(P79024) RecName: Full=Citrate synthase, mitochondrial; ... 155 4e-37
AJ296102_1(AJ296102|pid:none) Podospora anserina cit1 gene for m... 152 3e-36
CP000502_263(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 152 5e-36
AF193854_1(AF193854|pid:none) Saccharomyces kluyveri putative ci... 150 1e-35
AJ243204_1(AJ243204|pid:none) Aspergilluse niger citA gene for c... 150 2e-35
CR382131_112(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 149 2e-35
protein update 2009. 6.19
PSORT

psg: 0.90 gvh: 0.62 alm: 0.38 top: 0.73 tms: 0.00 mit: 0.39 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: mitochondrial
24.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: extracellular, including cell wall

>> prediction for VFE585 is mit

5' end seq. ID VFE585F
5' end seq.
>VFE585F.Seq
AATTTATTTATTTATTCAAATATATATTATATTAAATAAAATGTTTGCCAGATTAGCCAG
AGCTAACTACTTAAAGAATTCAGGTAGATACTTCTCTACTGAGCCAACCTTAAAAGAAAG
ATTAGTTCAAATCATCCCAGGTAAAATTGAACAAGTTAAACAATTAAAAACTGAACATGG
TGACAAAATCATTGGTACCTGTACTGTTGCACAAGCTTATGGTGGTATGAGATCAGTTAA
ATCATTAGTTACTGAAACATCATCATTAGATCCAGAAGAAGGCATTAGATTCCGTGGTTT
AACAATCCCAGAATGTCAAGAGAAATTACCAAAAGCTCCAGGTGGTGCTGAACCATTACC
AGAAGGTATTTTATGGTTACTTTTAACTGGTGAAGTTCCAACTGAATCACAAGTTAAAAC
CTTATCAAAAGA----------
Length of 5' end seq. 432
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -