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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE551
Library VF
(Link to library)
Clone ID VFE551
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID VFE551P
(Link to Original site)
Representative DNA sequence 
>VFE551 (VFE551Q) /CSM/VF/VFE5-C/VFE551Q.Seq.d/
ACTGTTGGCCTACTGGNAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTA
TAATTTGTTTTTTTTTTTTATAATAATTAAATAGAGTAAAAAAAAAAAGNATATATATAT
TAAAATTTTATTNAAANGGGTAGTXXXXXXXXXXGCGGCGGAAGAAATGATCTTTTGGCT
TCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATT
CAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTATCTGCAGCTATGGCT
AATCGTAGAGGTGGTATGAGAGAAGATATAAGAAGAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
llaywxhtlfytynivfsfynlffffiiik*SKKKKXIYIKILXKXV---

---GGRNDLLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLSAAMANRRGGMRED
IRR
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxthtflyi*ysf*fl*fvfffynn*ie*kkkxyiy*nfixxgs---

---aaeemifwlpfvvvqvlrllikpihsqifkvlvmkvhvl*lilylqlwlivevv*ek
i*ed

Frame B:
llaywxhtlfytynivfsfynlffffiiik*SKKKKXIYIKILXKXV---

---rrkk*sfgfhs*wcks*gc**nqstprysksw**rftffs*yficsyg*s*rwyerr
ykk

Frame C:
cwptgnthffihii*flvfiicfffl**lnrvkkkxiyilkfyxxg*---

---GGRNDLLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLSAAMANRRGGMRED
IRR
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE551 (VFE551Q) /CSM/VF/VFE5-C/VFE551Q.Seq.d/                        379   e-104
VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        327   6e-89
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        327   6e-89
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        327   6e-89
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/                        327   6e-89
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                        327   6e-89
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/                        327   6e-89
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/                        327   6e-89
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/                        327   6e-89
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/                        327   6e-89
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds.   327  2e-96  3
AW564167|AW564167.1 LG1_285_B04.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence.    46  0.27  1
CF428958|CF428958.1 PH1_18_G10.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_18_G10_A002 5', mRNA sequence.    46  0.27  1
BU570201|BU570201.1 AGENCOURT_10401385 NIH_MGC_82 Homo sapiens cDNA clone IMAGE:6618386 5', mRNA sequence.    44  1.1  1
AA427377|AA427377.1 zw52h05.r1 Soares_total_fetus_Nb2HF8_9w Homo sapiens cDNA clone IMAGE:773721 5' similar to TR:G808869 G808869 HUMAN GCP372. [1] ;, mRNA sequence.    44  1.1  1
AC024907|AC024907.29 Homo sapiens chromosome 3 clone RP11-911E23, WORKING DRAFT SEQUENCE, 42 unordered pieces.    44  1.1  1
CD358681|CD358681.1 AGENCOURT_14276153 NIH_MGC_180 Homo sapiens cDNA clone IMAGE:30388575 5', mRNA sequence.    44  1.1  1
BQ694005|BQ694005.1 1000148 Human Fat Cell 5'-Stretch Plus cDNA Library Homo sapiens cDNA 5', mRNA sequence.    44  1.1  1
BQ948820|BQ948820.1 AGENCOURT_8876490 NIH_MGC_101 Homo sapiens cDNA clone IMAGE:6464098 5', mRNA sequence.    44  1.1  1
BM472104|BM472104.1 AGENCOURT_6465327 NIH_MGC_72 Homo sapiens cDNA clone IMAGE:5539379 5', mRNA sequence.    44  1.1  1
dna update 2003. 9.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...   112   4e-24
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso...    57   2e-07
DQ985464_1(DQ985464|pid:none) Suberites domuncula Wiskott-Aldric...    37   0.16
protein update 2009. 2.10
PSORT 

 psg: 0.77  gvh: 0.43  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.06
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VFE551 is nuc
5' end seq. ID VFE551F
5' end seq. 
>VFE551F.Seq
ACTGTTGGCCTACTGGNAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTA
TAATTTGTTTTTTTTTTTTATAATAATTAAATAGAGTAAAAAAAAAAAGNATATATATAT
TAAAATTTTATTNAAANGGGTAGT----------
Length of 5' end seq. 144
3' end seq. ID VFE551Z
3' end seq. 
>VFE551Z.Seq
----------GCGGCGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTT
AAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCA
CGTTCTTTAGCTGATACTTTATCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAA
GATATAAGAAGAT
Length of 3' end seq. 183
Connected seq. ID VFE551P
Connected seq. 
>VFE551P.Seq
ACTGTTGGCCTACTGGNAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTA
TAATTTGTTTTTTTTTTTTATAATAATTAAATAGAGTAAAAAAAAAAAGNATATATATAT
TAAAATTTTATTNAAANGGGTAGT----------GCGGCGGAAGAAATGATCTTTTGGCT
TCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATT
CAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTATCTGCAGCTATGGCT
AATCGTAGAGGTGGTATGAGAGAAGATATAAGAAGAT
Length of connected seq. 327
Full length Seq ID -
Full length Seq. -
Length of full length seq. -