AFA209
Library AF
(Link to library)
Clone ID AFA209
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12134-1
Original site URL
Representative seq. ID AFA209F
(Link to Original site)
Representative DNA sequence
>AFA209 (AFA209Q) /CSM/AF/AFA2-A/AFA209Q.Seq.d/
CTGTTGGCCTACTGGATTTTTCAATCAAACCTAAAGTAATAACAGTACTTTAAATTAAAG
TAGTAAAATTAAAAAAACAAAATTTTTTTAAAATTTAAAAACAATATACAAAACAAAACG
AACATAATTAATTATAGTAAAATTTATCAAAAGAACAATGGATCCAATATCATCACAAAT
TCAAGGAATGTACCTCAAAGGAGTTGATTGAGATGGAATCAGAGTTTGCAGCACACACCT
ATCACCCAATTCCAGTTGTATTTAAAAAGGCATCAGGCGTTCATGTATGGGGACGTTGAA
XXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
vglldfsikpkvitvl*ikvvklkkqnffki*kqytkqnehn*l**NLSKEQWIQYHHKF
KECTSKELIEMESEFAAHTYHPIPVVFKKASGVHVWGR*---


Translated Amino Acid sequence (All Frames)
Frame A:
llaywifqsnlk**qyfklk**n*knkiflkfknniqnktniinyskiyqknngsniitn
srnvpqrs*lrwnqslqhtpitqfqlylkrhqafmygdv---


Frame B:
cwptgffnqt*snnstln*sskikktkff*nlktiyktkrt*liivkfikrtmdpissqi
qgmylkgvd*dgirvcsthlspnssci*kgirrscmgtl---


Frame C:
vglldfsikpkvitvl*ikvvklkkqnffki*kqytkqnehn*l**NLSKEQWIQYHHKF
KECTSKELIEMESEFAAHTYHPIPVVFKKASGVHVWGR*---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFA209 (AFA209Q) /CSM/AF/AFA2-A/AFA209Q.Seq.d/ 361 4e-99
SSB767 (SSB767Q) /CSM/SS/SSB7-C/SSB767Q.Seq.d/ 329 1e-89
SLC196 (SLC196Q) /CSM/SL/SLC1-D/SLC196Q.Seq.d/ 329 1e-89
SFH568 (SFH568Q) /CSM/SF/SFH5-C/SFH568Q.Seq.d/ 329 1e-89
SFF855 (SFF855Q) /CSM/SF/SFF8-C/SFF855Q.Seq.d/ 329 1e-89
AFO313 (AFO313Q) /CSM/AF/AFO3-A/AFO313Q.Seq.d/ 329 1e-89
AFK536 (AFK536Q) /CSM/AF/AFK5-B/AFK536Q.Seq.d/ 329 1e-89
AFK526 (AFK526Q) /CSM/AF/AFK5-B/AFK526Q.Seq.d/ 329 1e-89
AFE615 (AFE615Q) /CSM/AF/AFE6-A/AFE615Q.Seq.d/ 329 1e-89
SLD659 (SLD659Q) /CSM/SL/SLD6-C/SLD659Q.Seq.d/ 315 2e-85

own update 2001.10.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BD099556|BD099556.1 Novel genes cloned in humanneuroblastoma and fragments thereof. 46 0.008 2
BD019618|BD019618.1 Novel gene and novel gene fragment cloned in human neuroblastoma. 46 0.008 2
BX522713|BX522713.1 RZPD Mus musculus cDNA clone IMAGp952K1854 = IMAGE:1498983 5' EST. 46 0.24 1
BX514840|BX514840.1 RZPD Mus musculus cDNA clone IMAGp998A024846 = IMAGE:1972489 5' EST. 46 0.24 1
BX517080|BX517080.1 RZPD Mus musculus cDNA clone IMAGp998F045745 = IMAGE:2317827 5' EST. 44 0.97 1
BX522270|BX522270.1 RZPD Mus musculus cDNA clone IMAGp998F184717 = IMAGE:1923089 5' EST. 44 0.97 1
BD099643|BD099643.1 Novel genes cloned in humanneuroblastoma and fragments thereof. 44 0.97 1
BD019705|BD019705.1 Novel gene and novel gene fragment cloned in human neuroblastoma. 44 0.97 1
BG103196|BG103196.1 RHIZ2_19_D05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence. 44 0.97 1
BG102502|BG102502.1 RHIZ2_33_H01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence. 44 0.97 1
dna update 2003. 7.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR380959_36(CR380959|pid:none) Candida glabrata strain CBS138 ch... 55 6e-07
AE016818_468(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 55 9e-07
AM228955_1(AM228955|pid:none) Pinus sylvestris mRNA for ornithin... 54 1e-06
(P07991) RecName: Full=Ornithine aminotransferase; EC=2... 52 5e-06
AB006698_23(AB006698|pid:none) Arabidopsis thaliana genomic DNA,... 52 6e-06
CR382122_220(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 52 8e-06
X05571_1(X05571|pid:none) Yeast cargB (CAR2) gene for ornithine ... 51 1e-05
EU375566_1(EU375566|pid:none) Brassica napus ornithine aminotran... 51 1e-05
AP007157_557(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 49 4e-05
AB300311_1(AB300311|pid:none) Brassica rapa delta-OAT mRNA for o... 49 4e-05
protein update 2009. 3.25
PSORT

psg: 0.56 gvh: 0.20 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
20.0 %: mitochondrial
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for AFA209 is nuc

5' end seq. ID AFA209F
5' end seq.
>AFA209F.Seq
CTGTTGGCCTACTGGATTTTTCAATCAAACCTAAAGTAATAACAGTACTTTAAATTAAAG
TAGTAAAATTAAAAAAACAAAATTTTTTTAAAATTTAAAAACAATATACAAAACAAAACG
AACATAATTAATTATAGTAAAATTTATCAAAAGAACAATGGATCCAATATCATCACAAAT
TCAAGGAATGTACCTCAAAGGAGTTGATTGAGATGGAATCAGAGTTTGCAGCACACACCT
ATCACCCAATTCCAGTTGTATTTAAAAAGGCATCAGGCGTTCATGTATGGGGACGTTGAA
----------
Length of 5' end seq. 300
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -