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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE514
Library VF
(Link to library)
Clone ID VFE514
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13881-1
Original site URL
Representative seq. ID VFE514P
(Link to Original site)
Representative DNA sequence 
>VFE514 (VFE514Q) /CSM/VF/VFE5-A/VFE514Q.Seq.d/
AAAAACTCAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAAT
CCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAA
AATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAA
AACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGA
CCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAAC
AGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTAC
ACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCT
CAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGT
AAATAGAGAACXXXXXXXXXXGTTGGAGCTGAAGCTGTCNAAGCAAAAGCAAATGANATT
GATAATAACCTTCACATTTNTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGA
GCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATG
ATCTCTCAGCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCA
ATCGTAAATAAAGTTTCAAGTTTTGGTNCTTTTATT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ktqnnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTK
TVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFT
PELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNRE---

---VGAEAVXAKANXIDNNLHIXESAAAIKGAVVERANALDERFQISGFFKSASDMISQQ
ASNLMKAAEENSTVSPIVNKVSSFGXFI
Translated Amino Acid sequence (All Frames) 
Frame A:
knskqhtltqyiyyfklylnptttititttthsliyi*i*nnesrfhslcfkyfiesky*
nsfrfflilwknc*fifkk*pnw*fttsnssi*irfscknsfiinkcincr*snsscsiy
trirv*fnttifsttti**sqw*tttttttic*sttrrhck*r---

---VGAEAVXAKANXIDNNLHIXESAAAIKGAVVERANALDERFQISGFFKSASDMISQQ
ASNLMKAAEENSTVSPIVNKVSSFGXFI

Frame B:
ktqnnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTK
TVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFT
PELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNRE---

---lelklskqkqmxliitftfxrvplplrvql*reqmhsmkdsksqvslrvqvi*slsk
lpi**kqpkkivqfhqs*ikfqvlvll

Frame C:
klktthtytiyllf*iisksdnnnnnnnnnpffnihinik**iqisqfmfqifh*kqilk
qfqifshfveelliyf*emtqlvvhnkq**ylnqiqlqkqlyy*qmh*l*ik*fklfnlh
qn*sli*hnnflnnnnliisvvnnnhnnnnmlvnhkktl*ien---

---ws*scxsksk*x***pshx*ecrch*gcscreskctr*kipnlrfl*eck*ydlsas
fqfnessrrk*ysftnrk*sfkfwxfy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/                        571   e-162
VFO676 (VFO676Q) /CSM/VF/VFO6-D/VFO676Q.Seq.d/                        571   e-162
VFO336 (VFO336Q) /CSM/VF/VFO3-B/VFO336Q.Seq.d/                        571   e-162
VFL607 (VFL607Q) /CSM/VF/VFL6-A/VFL607Q.Seq.d/                        571   e-162
VFJ755 (VFJ755Q) /CSM/VF/VFJ7-C/VFJ755Q.Seq.d/                        571   e-162
VFI288 (VFI288Q) /CSM/VF/VFI2-D/VFI288Q.Seq.d/                        571   e-162
VFG496 (VFG496Q) /CSM/VF/VFG4-D/VFG496Q.Seq.d/                        571   e-162
VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/                        571   e-162
VFE514 (VFE514Q) /CSM/VF/VFE5-A/VFE514Q.Seq.d/                        571   e-162
VFE152 (VFE152Q) /CSM/VF/VFE1-C/VFE152Q.Seq.d/                        571   e-162
own update 2001.12. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC013329|AC013329.3 Homo sapiens chromosome 2 clone RP11-422B1 map 2, WORKING DRAFT SEQUENCE, 8 unordered pieces.    42  0.039  5
AC007976|AC007976.4 Drosophila melanogaster, chromosome 2L, region 22C-22D, BAC clone BACR01K07, complete sequence.    40  0.041  3
AP003121|AP003121.2 Homo sapiens genomic DNA, chromosome 11q clone:CTD-2234N14.    40  0.064  3
AE003756|AE003756.2 Drosophila melanogaster chromosome 3R, section 94 of 118 of the complete sequence.    40  0.064  5
BZ667511|BZ667511.1 PUBBK76TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa017M07, DNA sequence.    40  0.083  3
BZ684698|BZ684698.1 PUBBK64TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa017K07, DNA sequence.    40  0.083  3
AC126072|AC126072.3 Rattus norvegicus clone CH230-522N17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34  0.090  7
AL132857|AL132857.4 Human chromosome 14 DNA sequence BAC R-896J10 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    44  0.093  6
AC023999|AC023999.2 Homo sapiens chromosome 1 clone RP11-231H11 map 1, WORKING DRAFT SEQUENCE, 15 unordered pieces.    38  0.15  5
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    46  0.15  7
dna update 2003. 9.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954203_362(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    44   0.004
AP007171_537(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    42   0.016
AM920437_2007(AM920437|pid:none) Penicillium chrysogenum Wiscons...    41   0.035
EU958085_1(EU958085|pid:none) Zea mays clone 1672545 RNA-binding...    41   0.046
AC091811_13(AC091811|pid:none) Oryza sativa chromosome 3 BAC OSJ...    40   0.10
BT068289_1(BT068289|pid:none) Zea mays full-length cDNA clone ZM...    39   0.13
BT061154_1(BT061154|pid:none) Zea mays full-length cDNA clone ZM...    39   0.13
AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ...    39   0.18
CR855144_15(CR855144|pid:none) Oryza sativa (indica cultivar-gro...    39   0.18
EF086656_1(EF086656|pid:none) Picea sitchensis clone WS02730_G11...    38   0.30
protein update 2009. 6.19
PSORT 

 psg: 0.84  gvh: 0.45  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for VFE514 is cyt
5' end seq. ID VFE514F
5' end seq. 
>VFE514F.Seq
AAAAACTCAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAAT
CCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAA
AATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAA
AACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGA
CCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAAC
AGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTAC
ACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCT
CAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGT
AAATAGAGAAC----------
Length of 5' end seq. 491
3' end seq. ID VFE514Z
3' end seq. 
>VFE514Z.Seq
----------GTTGGAGCTGAAGCTGTCNAAGCAAAAGCAAATGANATTGATAATAACCT
TCACATTTNTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACT
CGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCAGCA
AGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAA
AGTTTCAAGTTTTGGTNCTTTTATT
Length of 3' end seq. 255
Connected seq. ID VFE514P
Connected seq. 
>VFE514P.Seq
AAAAACTCAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAAT
CCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAA
AATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAA
AACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGA
CCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAAC
AGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTAC
ACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCT
CAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGT
AAATAGAGAAC----------GTTGGAGCTGAAGCTGTCNAAGCAAAAGCAAATGANATT
GATAATAACCTTCACATTTNTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGA
GCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATG
ATCTCTCAGCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCA
ATCGTAAATAAAGTTTCAAGTTTTGGTNCTTTTATT
Length of connected seq. 746
Full length Seq ID -
Full length Seq. -
Length of full length seq. -