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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM407
Library AF
(Link to library)
Clone ID AFM407
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM407 (AFM407Q) /CSM/AF/AFM4-A/AFM407Q.Seq.d/
XXXXXXXXXXGTTTCCAAAGTGANCACTTTCAAGTTGCTGAAAGAGCTCTCTATCTCTTT
AGTAATGAAAATATAGTTTTATTAATAGCTTCAAAAAATAATTTCACTTTAGCTTTGGAA
ACTTTTTATAAACCATTACATGAAAATTCAATTTCGCATTGGAATAGATCAATTAGAAAT
TTATCAATTAGTTCATTAAAATTATTTATGGAAATTGATATGGATTTATTTAATAAAATT
AGTGAAAAATATAAAGAAAGTAAAAAGAAACAACAACAAATACAACAACGTGAAAAATTC
AAACAAAATGCGCCAGAAACTCAAAAAATCTAAACAAATTAACCAAAACAACAATAATAA
TAATAATAATATCAACAACAACAACAACAACAATAATAATAATAATGGTTCAACCGAAAC
TAAAGCTGATAAACCATCAATGATAAGAAGAAAATCATTATTACCAGTTGATCCTTCAAC
GATCGCTGCTTTATCCTTCTCATCGTTCACTTGAAGATATTATGTCAACNAATAGTAATA
GCGGTAATGATGACGATGATGAAAATAATCATACCAATCATGATTCTGAAATTGAAAATG
AAGTTAAAGAAGATTTTAGGGTACCTGTAAATAATCGTTACNCCTTTACCGAAAGGCATG
TTATCGATTTTAAAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---FQSXHFQVAERALYLFSNENIVLLIASKNNFTLALETFYKPLHENSISHWNRSIRNL
SISSLKLFMEIDMDLFNKISEKYKESKKKQQQIQQREKFKQNAPETQKI*tn*pkqq***
**yqqqqqqq****wfnrn*s**tindkkkiiits*sfndrcfillivhlkilcqxivia
vmmtmmkiiipimilklkmklkkilgyl*iivtplpkgmlsiln
Translated Amino Acid sequence (All Frames) 
Frame A:
---fpk*xlssc*ksslsl***kysfinsfkk*fhfsfgnfl*tit*kfnfale*in*kf
in*fikiiygn*ygfi**n**ki*rk*ketttnttt*kiqtkcarnsknlnkltkttiii
iiisttttttiiiimvqpklklinhq**eenhyyqlilqrsllypshrsledimstnsns
gnddddennhtnhdseienevkedfrvpvnnryxfterhvidfk


Frame B:
---FQSXHFQVAERALYLFSNENIVLLIASKNNFTLALETFYKPLHENSISHWNRSIRNL
SISSLKLFMEIDMDLFNKISEKYKESKKKQQQIQQREKFKQNAPETQKI*tn*pkqq***
**yqqqqqqq****wfnrn*s**tindkkkiiits*sfndrcfillivhlkilcqxivia
vmmtmmkiiipimilklkmklkkilgyl*iivtplpkgmlsiln


Frame C:
---skvxtfkllkelsislvmki*fy**lqkiisl*lwklfinhymkiqfrigidqleiy
qlvh*nylwkliwiyliklvknikkvkrnnnkynnvknsnkmrqklkkskqinqnnnnnn
nninnnnnnnnnnngstetkadkpsmirrksllpvdpstiaalsfssft*ryyvnx***r
***r**k*syqs*f*n*k*s*rrf*gtck*slxlyrkacyrf*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM407 (AFM407Q) /CSM/AF/AFM4-A/AFM407Q.Seq.d/                        521   e-147
AHH552 (AHH552Q) /CSM/AH/AHH5-C/AHH552Q.Seq.d/                        458   e-128
AHQ619 (AHQ619Q) /CSM/AH/AHQ6-A/AHQ619Q.Seq.d/                        452   e-126
CHK215 (CHK215Q) /CSM/CH/CHK2-A/CHK215Q.Seq.d/                        448   e-125
VHI443 (VHI443Q) /CSM/VH/VHI4-B/VHI443Q.Seq.d/                        436   e-121
CHP634 (CHP634Q) /CSM/CH/CHP6-B/CHP634Q.Seq.d/                        434   e-121
CHS353 (CHS353Q) /CSM/CH/CHS3-C/CHS353Q.Seq.d/                        428   e-119
CHG403 (CHG403Q) /CSM/CH/CHG4-A/CHG403Q.Seq.d/                        428   e-119
CHF893 (CHF893Q) /CSM/CH/CHF8-D/CHF893Q.Seq.d/                        428   e-119
CHF184 (CHF184Q) /CSM/CH/CHF1-D/CHF184Q.Seq.d/                        428   e-119
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346824) Dictyostelium discoideum cDNA clone:dda25n02, 3' ...   521   0.0    2
(BJ357596) Dictyostelium discoideum cDNA clone:dda64e06, 3' ...   428   0.0    4
(BJ352384) Dictyostelium discoideum cDNA clone:dda46g13, 3' ...   428   0.0    5
(BJ441628) Dictyostelium discoideum cDNA clone:ddv47f12, 3' ...   428   0.0    4
(BJ383502) Dictyostelium discoideum cDNA clone:ddc53c10, 3' ...   420   0.0    3
(BJ378783) Dictyostelium discoideum cDNA clone:ddc32g21, 3' ...   428   0.0    3
(BJ372427) Dictyostelium discoideum cDNA clone:ddc12g15, 3' ...   420   0.0    3
(BJ354263) Dictyostelium discoideum cDNA clone:dda53f06, 3' ...   428   0.0    3
(BJ354379) Dictyostelium discoideum cDNA clone:dda53n08, 3' ...   428   0.0    3
(BJ383359) Dictyostelium discoideum cDNA clone:ddc52c19, 3' ...   396   0.0    3
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL513466_12(AL513466|pid:none) Neurospora crassa DNA linkage gro...    70   7e-11
AE014297_2532(AE014297|pid:none) Drosophila melanogaster chromos...    69   1e-10
AJ277140_1(AJ277140|pid:none) Drosophila melanogaster mRNA for r...    69   1e-10
AE014297_2533(AE014297|pid:none) Drosophila melanogaster chromos...    69   1e-10
AE014297_2537(AE014297|pid:none) Drosophila melanogaster chromos...    69   1e-10
AE014297_2531(AE014297|pid:none) Drosophila melanogaster chromos...    69   1e-10
AE014297_2535(AE014297|pid:none) Drosophila melanogaster chromos...    69   1e-10
AM920436_1549(AM920436|pid:none) Penicillium chrysogenum Wiscons...    68   2e-10
AP007162_313(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...    68   2e-10
(O04376) RecName: Full=Serine/threonine protein phosphatase 2A 5...    68   3e-10
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM407 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM407Z
3' end seq. 
>AFM407Z.Seq
XXXXXXXXXXGTTTCCAAAGTGANCACTTTCAAGTTGCTGAAAGAGCTCTCTATCTCTTT
AGTAATGAAAATATAGTTTTATTAATAGCTTCAAAAAATAATTTCACTTTAGCTTTGGAA
ACTTTTTATAAACCATTACATGAAAATTCAATTTCGCATTGGAATAGATCAATTAGAAAT
TTATCAATTAGTTCATTAAAATTATTTATGGAAATTGATATGGATTTATTTAATAAAATT
AGTGAAAAATATAAAGAAAGTAAAAAGAAACAACAACAAATACAACAACGTGAAAAATTC
AAACAAAATGCGCCAGAAACTCAAAAAATCTAAACAAATTAACCAAAACAACAATAATAA
TAATAATAATATCAACAACAACAACAACAACAATAATAATAATAATGGTTCAACCGAAAC
TAAAGCTGATAAACCATCAATGATAAGAAGAAAATCATTATTACCAGTTGATCCTTCAAC
GATCGCTGCTTTATCCTTCTCATCGTTCACTTGAAGATATTATGTCAACNAATAGTAATA
GCGGTAATGATGACGATGATGAAAATAATCATACCAATCATGATTCTGAAATTGAAAATG
AAGTTAAAGAAGATTTTAGGGTACCTGTAAATAATCGTTACNCCTTTACCGAAAGGCATG
TTATCGATTTTAAAT
Length of 3' end seq. 675
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -