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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFE366
Library VF
(Link to library)
Clone ID VFE366
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID VFE366P
(Link to Original site)
Representative DNA sequence 
>VFE366 (VFE366Q) /CSM/VF/VFE3-C/VFE366Q.Seq.d/
ACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTCACGGTAA
TCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGTCATTCCC
AAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAGCTGGTAT
GACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAGAAATCGT
TGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTGGTTATGT
TGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAAGTGATAA
CTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTTTCACCAA
ATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTCTCCAAGC
CATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACAAATTAAA
ATTAACTCAAAAGAAAGCACACGTCCTTGAAATCXXXXXXXXXXTTAACTCAAAAGAAAG
CACACGTCCCTTGAAATCCAAGTCAATGGTGGTTCAATCGTCGAAAAAGTTAACTTTGCT
GTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAATTAATC
GATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGGGTGTC
CGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCATGG
CATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCTTCATCGT
GTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAA
ATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGT
TTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGT
CCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACCCAAACTGGTCGTGCTGCC
CTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCAT
CAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCT
TAAATTCAATAAATTAGATTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGM
THVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDN
FRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK
LTQKKAHVLEI---

---NSKESTRPLKSKSMVVQSSKKLTLLLPTLKRPSTSLVSLPKMN*smlsv*pkvkvsm
vslkdgvsvnyqerpikv*erlpvlvhgihpvlvppsqelvnsvtfivsketrrftesvk
lnqktvnksqpvrlnsi*lkrlsiqwvvslttvwlnmns*clkvvllvqerep*p*ervs
ppklvvlpsrkslsnssippaslvtvfikplkirlnisasrnqdqlrlkfnkld
Translated Amino Acid sequence (All Frames) 
Frame A:
tskqq*qyess*i*sstsr*srfqtkkesrqtsr*sqvipkg*pypksplncihglqswy
dsrcqrfrktrfkdaqkrnr*srhhh*mstnvhcwfswlc*nrsrsqnlqnrlgstfk**
lp*kiiqklvqikikesfhqir*tirn*rr*kin*slspshqkemfsrpchcshsssqik
inskestrp*n---

---ltqkkahvp*npsqwwfnrrks*lcccql*kdrqrhwclcrk*inrcyrcnqr*rfq
wch*kmgcp*itkkdp*rfkkgclywcmasipc*yhrpkswstrlpsscrkkqedlqnrs
sstrrr*tnlnr*d*irfn*kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkkey
hhpnwsccprenhsqihrylqqvwsrsssnr*r*d*ifrrqeikin*glnsin*i

Frame B:
LLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGM
THVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDN
FRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK
LTQKKAHVLEI---

---*lkrkhtsleiqvnggsivekvnfavanfektvnvtgvfaenelidvigvtkgkgfn
gvikrwgvrklprkthkglrkvacigawhpsrvsttvpragqlgylhrvernkkiyrigq
aqpedgkqistgktefdltektinpmggfahygmvkheflmlkgcvagprkraltlrksi
ttqtgraalekitlkfidtsskfghglhqtaedktkyfgvkksrstka*iq*irf

Frame C:
f*ttiti*vivnlklhvtvisvsdqereppdikvksshsqrmtvpkkst*lhswvtklv*
ltlsei*knqvqrctkkkslkpspslnvhqctllv*lvmlkplkvskptkpsglni*vit
svedytktgtnqnqrklspntlnntklkkvknqlkplskpskrdvqssvslltlkftn*n
*lkrkhtslk---

---NSKESTRPLKSKSMVVQSSKKLTLLLPTLKRPSTSLVSLPKMN*smlsv*pkvkvsm
vslkdgvsvnyqerpikv*erlpvlvhgihpvlvppsqelvnsvtfivsketrrftesvk
lnqktvnksqpvrlnsi*lkrlsiqwvvslttvwlnmns*clkvvllvqerep*p*ervs
ppklvvlpsrkslsnssippaslvtvfikplkirlnisasrnqdqlrlkfnkld
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE366 (VFE366Q) /CSM/VF/VFE3-C/VFE366Q.Seq.d/                       2480   0.0
VFL302 (VFL302Q) /CSM/VF/VFL3-A/VFL302Q.Seq.d/                       1366   0.0
VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/                       1366   0.0
VFI571 (VFI571Q) /CSM/VF/VFI5-C/VFI571Q.Seq.d/                       1366   0.0
VFI188 (VFI188Q) /CSM/VF/VFI1-D/VFI188Q.Seq.d/                       1366   0.0
VFG536 (VFG536Q) /CSM/VF/VFG5-B/VFG536Q.Seq.d/                       1366   0.0
VFF722 (VFF722Q) /CSM/VF/VFF7-A/VFF722Q.Seq.d/                       1366   0.0
VFF510 (VFF510Q) /CSM/VF/VFF5-A/VFF510Q.Seq.d/                       1366   0.0
VFD410 (VFD410Q) /CSM/VF/VFD4-A/VFD410Q.Seq.d/                       1366   0.0
SFE572 (SFE572Q) /CSM/SF/SFE5-C/SFE572Q.Seq.d/                       1366   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds.  1088  0.0  3
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728.         78  4e-44  10
Z74971|Z74971.1 S.cerevisiae chromosome XV reading frame ORF YOR063w.    70  6e-35  8
J01351|J01351.1 S.cerevisiae ribosomal protein L3 (tcm1) gene.    62  3e-34  8
Z70678|Z70678.1 S.cerevisiae chromosome XV DNA, 54.7 kb region.    70  7e-27  9
AL424946|AL424946.1 clone BA0AB002D01 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    66  3e-19  5
AX765804|AX765804.1 Sequence 13 from Patent WO03008440.           74  4e-19  4
AY052743|AY052743.1 Arabidopsis thaliana At1g43170/F1I21_18 mRNA, complete cds.    74  4e-19  4
AF361101|AF361101.1 Arabidopsis thaliana putative L3 cytoplasmic ribosomal protein (F1I21.L3) mRNA, complete cds.    74  4e-19  4
BE641342|BE641342.1 Cri2_3_A04_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_3_A04 5', mRNA sequence.    76  5e-19  4
dna update 2003. 9.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   436   0.0
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   280   e-147
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   276   e-146
AC125473_1(AC125473|pid:none) Medicago truncatula clone mth2-8j1...   274   e-145
(P39023) RecName: Full=60S ribosomal protein L3; AltName: Full=H...   270   e-145
AK151142_1(AK151142|pid:none) Mus musculus bone marrow macrophag...   269   e-144
(P39872) RecName: Full=60S ribosomal protein L3;  &BC102253_1(BC...   269   e-144
AK151057_1(AK151057|pid:none) Mus musculus bone marrow macrophag...   269   e-144
BC008492_1(BC008492|pid:none) Homo sapiens ribosomal protein L3,...   270   e-144
(P21531) RecName: Full=60S ribosomal protein L3; AltName: Full=L...   269   e-144
protein update 2009. 6.19
PSORT 

 psg: 0.48  gvh: 0.21  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.06
 nuc: 0.31  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for VFE366 is nuc
5' end seq. ID VFE366F
5' end seq. 
>VFE366F.Seq
ACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTCACGGTAA
TCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGTCATTCCC
AAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAGCTGGTAT
GACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAGAAATCGT
TGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTGGTTATGT
TGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAAGTGATAA
CTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTTTCACCAA
ATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTCTCCAAGC
CATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACAAATTAAA
ATTAACTCAAAAGAAAGCACACGTCCTTGAAATC----------
Length of 5' end seq. 574
3' end seq. ID VFE366Z
3' end seq. 
>VFE366Z.Seq
----------TTAACTCAAAAGAAAGCACACGTCCCTTGAAATCCAAGTCAATGGTGGTT
CAATCGTCGAAAAAGTTAACTTTGCTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTG
GTGTCTTTGCCGAAAATGAATTAATCGATGTTATCGGTGTAACCAAAGGTAAAGGTTTCA
ATGGTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAA
GAAAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAG
CTGGTCAACTCGGTTACCTTCATCGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTC
AAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTG
AAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCT
TAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTA
TCACCACCCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCT
CCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGCG
TCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTAGATTT
Length of 3' end seq. 697
Connected seq. ID VFE366P
Connected seq. 
>VFE366P.Seq
ACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTCACGGTAA
TCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGTCATTCCC
AAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAGCTGGTAT
GACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAGAAATCGT
TGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTGGTTATGT
TGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAAGTGATAA
CTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTTTCACCAA
ATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTCTCCAAGC
CATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACAAATTAAA
ATTAACTCAAAAGAAAGCACACGTCCTTGAAATC----------TTAACTCAAAAGAAAG
CACACGTCCCTTGAAATCCAAGTCAATGGTGGTTCAATCGTCGAAAAAGTTAACTTTGCT
GTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAATTAATC
GATGTTATCGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGGGTGTC
CGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCATGG
CATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCTTCATCGT
GTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAA
ATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGT
TTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGT
CCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACCCAAACTGGTCGTGCTGCC
CTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCAT
CAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCT
TAAATTCAATAAATTAGATTT
Length of connected seq. 1271
Full length Seq ID -
Full length Seq. -
Length of full length seq. -