>VFE365 (VFE365Q) /CSM/VF/VFE3-C/VFE365Q.Seq.d/
ACACACTACATAAACATATTTTTTTCATTATACATATAAACAAATAAATCAAATACCATG
GATGAAAGTATTAAAAAGTTACCAGATTTAGCTATTGCTGATTTAATTTTCACTGTTAAA
TTAGAAGGTAAAACTGGTACTGAATCATATAATAAATTAATTAAAGAAATTGAAACACAC
AAAATGTTACCATTATATAAAATACTTGTAGAACAATTAAAATGGACAGAAGATCAAGGA
TTAGTATCAAAATTAAAAGCTGAAAATGAAAGTGAATTAAAAGCATTAGATAATAAAATT
ACTGATAGTGTTGAAAATTTTGGTGAGTCTGAAATTAGAGAAGCATATTTAGCAAAATCT
GATTTCTATTGTCGTATCGGTGATAAAGATACAGCAGTTGAAATGTATAGACAAACGTTT
GAAAAAACAGTACCATTGGGTCAAAAATTAGATATTGTTTTTACATTAATTAGAATGGGT
ATTTTTTGGATGGATCATGATATTGTAACAAGAAATTTAGAGAAAGCTCAATCATTAGTT
GAAGAAGGTGGTGATTGGGATAGAAAGGAATCGTTTGAAAACATATGAAGCAGTTTATAA
AATGTCCXXXXXXXXXX

thyiniffslyi*TNKSNTMDESIKKLPDLAIADLIFTVKLEGKTGTESYNKLIKEIETH
KMLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREAYLAKS
DFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLIRMGIFWMDHDIVTRNLEKAQSLV
EEGGDWDRKESFENI*ssl*nv---

Frame A:
thyiniffslyi*TNKSNTMDESIKKLPDLAIADLIFTVKLEGKTGTESYNKLIKEIETH
KMLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREAYLAKS
DFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLIRMGIFWMDHDIVTRNLEKAQSLV
EEGGDWDRKESFENI*ssl*nv---


Frame B:
htt*tyffhytykqinqipwmkvlksyqi*llli*fslln*kvklvlnhiin*lkklkht
kcyhyikyl*nn*ngqkikd*yqn*klkmkvn*kh*iikllivlkilvslklekhi*qnl
isivvsvikiqqlkcidkrlkkqyhwvkn*ilflh*lewvffgwimil*qei*rklnh*l
kkvvigiernrlktyeavykm---


Frame C:
tlhkhiffiihink*ikyhg*ky*kvtrfsyc*fnfhc*irr*nwy*ii**in*rn*ntq
nvtii*ntcrtikmdrrsrisikiks*k*k*iksir**ny**c*kfw*v*n*rsifski*
fllsyr**ryss*nv*tnv*knstigskirycfyin*ngyfldgs*ycnkkfressiis*
rrw*lg*kgiv*khmkqfikc---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE365 (VFE365Q) /CSM/VF/VFE3-C/VFE365Q.Seq.d/                       1162   0.0
AFK561 (AFK561Q) /CSM/AF/AFK5-C/AFK561Q.Seq.d/                       1152   0.0
AHB478 (AHB478Q) /CSM/AH/AHB4-D/AHB478Q.Seq.d/                       1146   0.0
AFB302 (AFB302Q) /CSM/AF/AFB3-A/AFB302Q.Seq.d/                       1146   0.0
VFL342 (VFL342Q) /CSM/VF/VFL3-B/VFL342Q.Seq.d/                       1138   0.0
AFJ152 (AFJ152Q) /CSM/AF/AFJ1-C/AFJ152Q.Seq.d/                       1138   0.0
AFF282 (AFF282Q) /CSM/AF/AFF2-D/AFF282Q.Seq.d/                       1138   0.0
AFA582 (AFA582Q) /CSM/AF/AFA5-D/AFA582Q.Seq.d/                       1100   0.0
VFB468 (VFB468Q) /CSM/VF/VFB4-C/VFB468Q.Seq.d/                       1098   0.0
VFE720 (VFE720Q) /CSM/VF/VFE7-A/VFE720Q.Seq.d/                       1080   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AZ674420|AZ674420.1 ENTKF14TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  1e-05  2
AL627106|AL627106.8 Human DNA sequence from clone RP11-7K11 on chromosome 1.    42  7e-05  4
BQ605169|BQ605169.1 ar05-a10 Artemia EII Stage, Stratagene (cat. 200450) Artemia franciscana cDNA clone ar05-a10 5' similar to 26S proteasome regulatory complex subunit p42A, mRNA sequence.    46  0.022  2
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    38  0.022  9
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    32  0.061  11
AE017029|AE017029.1 Bacillus anthracis str. Ames section 6 of 18 of the complete genome.    38  0.071  8
AC131080|AC131080.6 Mus musculus clone RP23-438H16, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42  0.11  5
AL078645|AL078645.31 Human DNA sequence from clone GS1-115G20 on chromosome 1. Contains  (part of) a putative novel gene, the 5' end of a novel gene, a  pseudogene similar to mouse Htf9c, ESTs, STSs and GSSs.    50  0.11  2
AC090043|AC090043.2 Homo sapiens chromosome 3 clone RP11-551L4 map 3p, complete sequence.    32  0.12  6
CB077397|CB077397.1 hj53c04.g1 Hedyotis terminalis flower - Stage 2 (NYBG) Hedyotis terminalis cDNA clone hj53c04, mRNA sequence.    48  0.13  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55C75) RecName: Full=26S proteasome non-ATPase regulatory subu...   340   8e-95
BC064247_1(BC064247|pid:none) Xenopus tropicalis proteasome (pro...   175   8e-43
BC059159_1(BC059159|pid:none) Rattus norvegicus proteasome (pros...   175   1e-42
(Q3T0B2) RecName: Full=26S proteasome non-ATPase regulatory subu...   174   1e-42
(Q15008) RecName: Full=26S proteasome non-ATPase regulatory subu...   173   3e-42
BT075430_1(BT075430|pid:none) Osmerus mordax clone omor-eva-513-...   172   5e-42
BT043716_1(BT043716|pid:none) Salmo salar clone HM5_2909 proteas...   172   9e-42
BT073643_1(BT073643|pid:none) Oncorhynchus mykiss clone omyk-evn...   170   3e-41
BT082315_1(BT082315|pid:none) Anoplopoma fimbria clone afim-evh-...   168   1e-40
BC108599_1(BC108599|pid:none) Xenopus laevis hypothetical protei...   166   3e-40

 psg: 0.75  gvh: 0.39  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VFE365 is cyt

>VFE365F.Seq
ACACACTACATAAACATATTTTTTTCATTATACATATAAACAAATAAATCAAATACCATG
GATGAAAGTATTAAAAAGTTACCAGATTTAGCTATTGCTGATTTAATTTTCACTGTTAAA
TTAGAAGGTAAAACTGGTACTGAATCATATAATAAATTAATTAAAGAAATTGAAACACAC
AAAATGTTACCATTATATAAAATACTTGTAGAACAATTAAAATGGACAGAAGATCAAGGA
TTAGTATCAAAATTAAAAGCTGAAAATGAAAGTGAATTAAAAGCATTAGATAATAAAATT
ACTGATAGTGTTGAAAATTTTGGTGAGTCTGAAATTAGAGAAGCATATTTAGCAAAATCT
GATTTCTATTGTCGTATCGGTGATAAAGATACAGCAGTTGAAATGTATAGACAAACGTTT
GAAAAAACAGTACCATTGGGTCAAAAATTAGATATTGTTTTTACATTAATTAGAATGGGT
ATTTTTTGGATGGATCATGATATTGTAACAAGAAATTTAGAGAAAGCTCAATCATTAGTT
GAAGAAGGTGGTGATTGGGATAGAAAGGAATCGTTTGAAAACATATGAAGCAGTTTATAA
AATGTCC----------