VFE318
Library VF
(Link to library)
Clone ID VFE318
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12898-1
Original site URL
Representative seq. ID VFE318E
(Link to Original site)
Representative DNA sequence
>VFE318 (VFE318Q) /CSM/VF/VFE3-A/VFE318Q.Seq.d/
AAATTAACAAGTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGT
TGATGGTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGA
ATTAGGAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGG
TCCACCAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGA
TGAAGTTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTG
TGATTTTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGA
AGGCATTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAAC
CGAGTTGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGA
GCAAACCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACAC
AAGTTTATCACATTTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTC
ACCAAAACCAAACGATAAAATCATTTATATGGATGGTGGTTTCGATTTATTCCATGTAGG
TCANACTGAGGCTTTGAAACAAGCAANAGCACTCGGTGACTATCTCATCGTTGGTGTTCA
TGATGATANAGTAGTTCNCGAACAAAAAGGTAGCAACTTCCCAATTATGAATTTACATGA
ACGTGNACTCTCTGNACTCTCATGTCGTTATGTCGATGAAGTTGTCATTGGTGCTCCATT
CAGTGTCACCAAANATATGATTGACTCNCTTCACATCAATGTTGTCGTTCATGGTGATGA
TCAAGTTGNACTCGGTCCANAAGGTGGTGTANATCCANACAAACTCCCAANANAATTAGG
TATTTACAAANAAGTTNAACATACTGAAGGTCTCNCTGCAACTGAAATCGTTAAAANAAT
CATTGATAATAGACTTCAATATGAAGCTCGNAATCGTAAAAAANAAGCNAAAGAAATTAA
TTCCNTTGAACNATCNAATTAAAAAAAATTAAAAAATAAAAAATAAAAATAAAACNAATA
AAAAAAAAAATAGAAAAAAAATT
sequence update 2001. 6. 9
Translated Amino Acid sequence
n*QVFTMSTTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKG
PPVMNEQERYKAVRACKWADEVAEGAPYTLTEEYLDSLNCDFCVHGEDISVGADGKDVYE
GIKKSGKFRFIKRTEGVSTTELVGRMLLCTKDHLQNVSGEQTSPLGGVNPNVLHKQSPYT
SLSHFLPTTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGXTEALKQAXALGDYLIVGVH
DDXVVXEQKGSNFPIMNLHERXLSXLSCRYVDEVVIGAPFSVTKXMIDSLHINVVVHGDD
QVXLGPXGGVXPXKLPXXLGIYKXVXHTEGLXATEIVKXIIDNRLQYEARNRKKXAKEIN
SXEXSN*kklknkk*k*nx*kkk*kkn


Translated Amino Acid sequence (All Frames)
Frame A:
kltsfyneyyn**kan*slc*wlf*fnafwtckciktskrirryfsswctyr*rnckk*r
stsye*trki*sstcm*mgr*scrrctlyfn*rifg*fkl*flctw*ryfswcrw*rcl*
rh*kew*i*ihqty*rcfnnrvgwsyvimhqrpsskcfr*anltigrcqskrftqtitih
kfitfppnhqkdrpilrrsftktkr*nhlygwwfrfipcrsx*gfetsxstr*lshrwcs
**xsssrtkr*qlpnyeft*txtlxtlmslcr*schwcsiqchqxyd*lxshqccrsw**
ssxtrsxrwcxsxqtpxxirylqxsxty*rsxcn*nr*xnh***tsi*ssxs*kxsxrn*
fx*tixlkkikk*kikikxikkkiekk


Frame B:
n*QVFTMSTTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKG
PPVMNEQERYKAVRACKWADEVAEGAPYTLTEEYLDSLNCDFCVHGEDISVGADGKDVYE
GIKKSGKFRFIKRTEGVSTTELVGRMLLCTKDHLQNVSGEQTSPLGGVNPNVLHKQSPYT
SLSHFLPTTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGXTEALKQAXALGDYLIVGVH
DDXVVXEQKGSNFPIMNLHERXLSXLSCRYVDEVVIGAPFSVTKXMIDSLHINVVVHGDD
QVXLGPXGGVXPXKLPXXLGIYKXVXHTEGLXATEIVKXIIDNRLQYEARNRKKXAKEIN
SXEXSN*kklknkk*k*nx*kkk*kkn


Frame C:
inkflq*vlqliksqlefmlmvvli*cildmqmh*dkqen*eif**lvyiqmkklqkikv
hql*mnkkdikqyvhvngqmklqkvhlil*lkniwiv*tvifvymvkifqlvqmvkmfmk
alkrvvnldssnvlkvfqqpswlvvcyyapktifkmfqvskphhwevsiqtfytnnhhtq
vyhissqpperssnsqkvvhqnqtiksfiwmvvsiysm*vxlrl*nkqxhsvtisslvfm
mix*fxnkkvatsql*iymnvxslxshvvmsmklslvlhsvspxi*ltxftsmlsfmvmi
klxsvxkvvxixtnsqxn*vftxkxnilkvslqlkslkxsliidfnmklxivkxkxkkli
plnxxikkn*kiknknktnkkknrkki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE318 (VFE318Q) /CSM/VF/VFE3-A/VFE318Q.Seq.d/ 1988 0.0
VFN722 (VFN722Q) /CSM/VF/VFN7-A/VFN722Q.Seq.d/ 1980 0.0
VFI626 (VFI626Q) /CSM/VF/VFI6-B/VFI626Q.Seq.d/ 1972 0.0
VFG365 (VFG365Q) /CSM/VF/VFG3-C/VFG365Q.Seq.d/ 1965 0.0
CFG421 (CFG421Q) /CSM/CF/CFG4-A/CFG421Q.Seq.d/ 1961 0.0
VFM413 (VFM413Q) /CSM/VF/VFM4-A/VFM413Q.Seq.d/ 1937 0.0
VFJ833 (VFJ833Q) /CSM/VF/VFJ8-B/VFJ833Q.Seq.d/ 1931 0.0
VFG517 (VFG517Q) /CSM/VF/VFG5-A/VFG517Q.Seq.d/ 1923 0.0
VFA266 (VFA266Q) /CSM/VF/VFA2-C/VFA266Q.Seq.d/ 1915 0.0
VFF530 (VFF530Q) /CSM/VF/VFF5-B/VFF530Q.Seq.d/ 1788 0.0

own update 2001.12. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG140383|BG140383.1 EST480825 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP17G1 5' sequence, mRNA sequence. 92 3e-16 3
BG131085|BG131085.1 EST463977 tomato crown gall Lycopersicon esculentum cDNA clone cTOE2D11 5' sequence, mRNA sequence. 92 4e-16 3
AW217896|AW217896.1 EST296610 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD1C15, mRNA sequence. 92 3e-15 2
AI778006|AI778006.1 EST258885 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES3N17, mRNA sequence. 92 4e-15 2
AW217261|AW217261.1 EST295975 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC89G22, mRNA sequence. 92 4e-15 2
AW219042|AW219042.1 EST301524 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX2H3, mRNA sequence. 92 4e-15 2
BG138134|BG138134.1 EST478576 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP8K18 5' sequence, mRNA sequence. 92 4e-15 2
BG642411|BG642411.1 EST355887 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD11C15 5' end, mRNA sequence. 92 4e-15 2
BG601025|BG601025.1 EST505920 cSTS Solanum tuberosum cDNA clone cSTS30D8 5' sequence, mRNA sequence. 90 2e-14 2
BI935302|BI935302.1 EST555191 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD22O12 5' end, mRNA sequence. 92 2e-14 1
dna update 2003. 9.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55BZ4) RecName: Full=Ethanolamine-phosphate cytidylyltransfera... 679 0.0
AE014134_2379(AE014134|pid:none) Drosophila melanogaster chromos... 369 e-100
BT077764_1(BT077764|pid:none) Lepeophtheirus salmonis Pacific fo... 358 2e-97
(Q5EA75) RecName: Full=Ethanolamine-phosphate cytidylyltransfera... 357 3e-97
AK166319_1(AK166319|pid:none) Mus musculus mammary gland RCB-052... 356 8e-97
AL663030_9(AL663030|pid:none) Mouse DNA sequence from clone RP23... 356 1e-96
AM494969_98(AM494969|pid:none) Leishmania braziliensis chromosom... 351 2e-95
AM502250_130(AM502250|pid:none) Leishmania infantum chromosome 32. 351 3e-95
BC088018_1(BC088018|pid:none) Xenopus tropicalis phosphate cytid... 350 4e-95
AY189524_1(AY189524|pid:none) Mus musculus CTP:ethanolaminephosp... 350 7e-95
protein update 2009. 7.10
PSORT

psg: 0.52 gvh: 0.53 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: nuclear
28.0 %: mitochondrial
28.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VFE318 is nuc

5' end seq. ID VFE318F
5' end seq.
>VFE318F.Seq
AAATTAACAAGTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGT
TGATGGTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGA
ATTAGGAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGG
TCCACCAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGA
TGAAGTTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTG
TGATTTTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGA
AGGCATTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAAC
CGAGTTGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGA
GCAAACCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACAC
AAGTTTATCACATTTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAANGTCGTTC
ACCAAAACCAAACGATAAAA----------
Length of 5' end seq. 620
3' end seq. ID VFE318Z
3' end seq.
>VFE318Z.Seq
----------GGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAAGTT
TATCACATTTCCTCCCAACCACCAGAAANATCGTCCAATTNTCAGAAGGTCGTTCNCCAA
AACCAAACGATAAAATCATTTATATGGATGGTGGTTTCGATTTATTCCATGTAGGTCANA
CTGAGGCTTTGAAACAAGCAANAGCACTCGGTGACTATCTCATCGTTGGTGTTCATGATG
ATANAGTAGTTCNCGAACAAAAAGGTAGCAACTTCCCAATTATGAATTTACATGAACGTG
NACTCTCTGNACTCTCATGTCGTTATGTCGATGAAGTTGTCATTGGTGCTCCATTCAGTG
TCACCAAANATATGATTGACTCNCTTCACATCAATGTTGTCGTTCATGGTGATGATCAAG
TTGNACTCGGTCCANAAGGTGGTGTANATCCANACAAACTCCCAANANAATTAGGTATTT
ACAAANAAGTTNAACATACTGAAGGTCTCNCTGCAACTGAAATCGTTAAAANAATCATTG
ATAATAGACTTCAATATGAAGCTCGNAATCGTAAAAAANAAGCNAAAGAAATTAATTCCN
TTGAACNATCNAATTAAAAAAAATTAAAAAATAAAAAATAAAAATAAAACNAATAAAAAA
AAAAATAGAAAAAAAATT
Length of 3' end seq. 668
Connected seq. ID VFE318P
Connected seq.
>VFE318P.Seq
AAATTAACAAGTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGT
TGATGGTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGA
ATTAGGAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGG
TCCACCAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGA
TGAAGTTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTG
TGATTTTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGA
AGGCATTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAAC
CGAGTTGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGA
GCAAACCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACAC
AAGTTTATCACATTTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAANGTCGTTC
ACCAAAACCAAACGATAAAA----------GGGAGGTGTCAATCCAAACGTTTTACACAA
ACAATCACCATACACAAGTTTATCACATTTCCTCCCAACCACCAGAAANATCGTCCAATT
NTCAGAAGGTCGTTCNCCAAAACCAAACGATAAAATCATTTATATGGATGGTGGTTTCGA
TTTATTCCATGTAGGTCANACTGAGGCTTTGAAACAAGCAANAGCACTCGGTGACTATCT
CATCGTTGGTGTTCATGATGATANAGTAGTTCNCGAACAAAAAGGTAGCAACTTCCCAAT
TATGAATTTACATGAACGTGNACTCTCTGNACTCTCATGTCGTTATGTCGATGAAGTTGT
CATTGGTGCTCCATTCAGTGTCACCAAANATATGATTGACTCNCTTCACATCAATGTTGT
CGTTCATGGTGATGATCAAGTTGNACTCGGTCCANAAGGTGGTGTANATCCANACAAACT
CCCAANANAATTAGGTATTTACAAANAAGTTNAACATACTGAAGGTCTCNCTGCAACTGA
AATCGTTAAAANAATCATTGATAATAGACTTCAATATGAAGCTCGNAATCGTAAAAAANA
AGCNAAAGAAATTAATTCCNTTGAACNATCNAATTAAAAAAAATTAAAAAATAAAAAATA
AAAATAAAACNAATAAAAAAAAAAATAGAAAAAAAATT
Length of connected seq. 1288
Full length Seq ID VFE318E
Full length Seq.
>VFE318E.Seq
AAATTAACAAGTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGT
TGATGGTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGA
ATTAGGAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGG
TCCACCAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGA
TGAAGTTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTG
TGATTTTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGA
AGGCATTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAAC
CGAGTTGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGA
GCAAACCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACAC
AAGTTTATCACATTTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTC
ACCAAAACCAAACGATAAAATCATTTATATGGATGGTGGTTTCGATTTATTCCATGTAGG
TCANACTGAGGCTTTGAAACAAGCAANAGCACTCGGTGACTATCTCATCGTTGGTGTTCA
TGATGATANAGTAGTTCNCGAACAAAAAGGTAGCAACTTCCCAATTATGAATTTACATGA
ACGTGNACTCTCTGNACTCTCATGTCGTTATGTCGATGAAGTTGTCATTGGTGCTCCATT
CAGTGTCACCAAANATATGATTGACTCNCTTCACATCAATGTTGTCGTTCATGGTGATGA
TCAAGTTGNACTCGGTCCANAAGGTGGTGTANATCCANACAAACTCCCAANANAATTAGG
TATTTACAAANAAGTTNAACATACTGAAGGTCTCNCTGCAACTGAAATCGTTAAAANAAT
CATTGATAATAGACTTCAATATGAAGCTCGNAATCGTAAAAAANAAGCNAAAGAAATTAA
TTCCNTTGAACNATCNAATTAAAAAAAATTAAAAAATAAAAAATAAAAATAAAACNAATA
AAAAAAAAAATAGAAAAAAAATT
Length of full length seq. 1163