AFM388
Library AF
(Link to library)
Clone ID AFM388
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM388P
(Link to Original site)
Representative DNA sequence
>AFM388 (AFM388Q) /CSM/AF/AFM3-D/AFM388Q.Seq.d/
ATTTTTTTTTTCCTAACCAACGAGNGTCTAACCGTTATTTATAATATTATATATATAATT
GATTTTGTTTGTTTTTTTTTTTTTGGGGCCGGGAAAAAAAAAATTAAAAAAAAATTAAAA
TTNANGGXXXXXXXXXXGCCGGTAGACCATACGATAGATATGATAGTAGAGATAATAGAG
GTGGATATGCAGGTGGTGGAGGTAGACCTTATGATAGATATGATAGCAGAGATAATAGGG
ATATGTATGGTGGACCACCAAGAGATTCCTATCGTTCATCCTATAGAGGCGGGTATGATT
CAAGACCTCATCATGGCGGTAGAGGTGGTTATAGAGATAGCGGTAGTTATCACCATCCTT
ATGGTGGCGGTGGTAGTGGTGGAAGTG
sequence update 2009. 4. 3
Translated Amino Acid sequence
IFFFLTNEXLTVIYNIIYIIDFVCFFFFGAGKKKIKKKLKXX---

---AGRPYDRYDSRDNRGGYAGGGGRPYDRYDSRDNRDMYGGPPRDSYRSSYRGGYDSRP
HHGGRGGYRDSGSYHHPYGGGGSGGS


Translated Amino Acid sequence (All Frames)
Frame A:
IFFFLTNEXLTVIYNIIYIIDFVCFFFFGAGKKKIKKKLKXX---

---AGRPYDRYDSRDNRGGYAGGGGRPYDRYDSRDNRDMYGGPPRDSYRSSYRGGYDSRP
HHGGRGGYRDSGSYHHPYGGGGSGGS

Frame B:
fffs*ptxv*plfiilyi*lilfvffflgpgkkklkkn*nxx---

---pvdhtidmiveiievdmqvvevdlmidmiaeiigicmvdhqeipivhpieagmiqdl
imavevvieiavvitilmvavvvvev

Frame C:
fffpnqrxsnryl*yyiyn*fclffffwgrekkn*kkikix---

---r*tir*i***r**rwicrwwr*tl**i**qr**gyvwwttkrflsfil*rrv*fkts
swr*rwl*r*r*lspslwwrw*wwk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM388 (AFM388Q) /CSM/AF/AFM3-D/AFM388Q.Seq.d/ 496 e-139
SLE782 (SLE782Q) /CSM/SL/SLE7-D/SLE782Q.Seq.d/ 478 e-134
SLG868 (SLG868Q) /CSM/SL/SLG8-C/SLG868Q.Seq.d/ 381 e-105
VHP643 (VHP643Q) /CSM/VH/VHP6-B/VHP643Q.Seq.d/ 113 2e-24
CFC167 (CFC167Q) /CSM/CF/CFC1-C/CFC167Q.Seq.d/ 42 0.006
VHC386 (VHC386Q) /CSM/VH/VHC3-D/VHC386Q.Seq.d/ 38 0.095
SFL231 (SFL231Q) /CSM/SF/SFL2-B/SFL231Q.Seq.d/ 38 0.095
AHQ542 (AHQ542Q) /CSM/AH/AHQ5-B/AHQ542Q.Seq.d/ 38 0.095
AFK513 (AFK513Q) /CSM/AF/AFK5-A/AFK513Q.Seq.d/ 38 0.095
AFI613 (AFI613Q) /CSM/AF/AFI6-A/AFI613Q.Seq.d/ 38 0.095

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AY387646) Dictyostelium discoideum Phg1B (phg1b) gene, comp... 484 e-158 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 484 e-156 2
(BJ347052) Dictyostelium discoideum cDNA clone:dda25p21, 3' ... 494 e-135 1
(AU061604) Dictyostelium discoideum slug cDNA, clone SLE782. 478 e-131 1
(AU061983) Dictyostelium discoideum slug cDNA, clone SLG868. 381 e-101 1
(BJ427396) Dictyostelium discoideum cDNA clone:ddv62e12, 5' ... 113 5e-21 1
(BJ329698) Dictyostelium discoideum cDNA clone:dda25p21, 5' ... 113 5e-21 1
(X95276) Plasmodium falciparum complete gene map of plastid-... 52 0.016 1
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 52 0.016 1
(EI710209) IGBR11P21TR BAC library from the recurrent gliobl... 50 0.062 1
dna update 2009. 4.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE014187_405(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 36 0.45
AF160197_1(AF160197|pid:none) Glycine max Ni-binding urease acce... 35 1.0
(Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD... 34 1.3
DQ351536_1(DQ351536|pid:none) Mytilus californianus foot protein... 33 2.2
AM286415_3449(AM286415|pid:none) Yersinia enterocolitica subsp. ... 33 3.8
(P04929) Histidine-rich glycoprotein precursor. &KGZQHL(A22692)... 32 5.0
(Q8C176) RecName: Full=Transcription initiation factor TFIID sub... 32 6.5
AF057694_1(AF057694|pid:none) Homo sapiens TBP-associated factor... 32 6.5
BT066452_1(BT066452|pid:none) Zea mays full-length cDNA clone ZM... 32 6.5
AF026445_1(AF026445|pid:none) Homo sapiens cofactor of initiator... 32 6.5
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM388 is

5' end seq. ID AFM388F
5' end seq.
>AFM388F.Seq
ATTTTTTTTTTCCTAACCAACGAGNGTCTAACCGTTATTTATAATATTATATATATAATT
GATTTTGTTTGTTTTTTTTTTTTTGGGGCCGGGAAAAAAAAAATTAAAAAAAAATTAAAA
TTNANGGXXXXXXXXXX
Length of 5' end seq. 137
3' end seq. ID AFM388Z
3' end seq.
>AFM388Z.Seq
XXXXXXXXXXGCCGGTAGACCATACGATAGATATGATAGTAGAGATAATAGAGGTGGATA
TGCAGGTGGTGGAGGTAGACCTTATGATAGATATGATAGCAGAGATAATAGGGATATGTA
TGGTGGACCACCAAGAGATTCCTATCGTTCATCCTATAGAGGCGGGTATGATTCAAGACC
TCATCATGGCGGTAGAGGTGGTTATAGAGATAGCGGTAGTTATCACCATCCTTATGGTGG
CGGTGGTAGTGGTGGAAGTG
Length of 3' end seq. 260
Connected seq. ID AFM388P
Connected seq.
>AFM388P.Seq
ATTTTTTTTTTCCTAACCAACGAGNGTCTAACCGTTATTTATAATATTATATATATAATT
GATTTTGTTTGTTTTTTTTTTTTTGGGGCCGGGAAAAAAAAAATTAAAAAAAAATTAAAA
TTNANGG----------GCCGGTAGACCATACGATAGATATGATAGTAGAGATAATAGAG
GTGGATATGCAGGTGGTGGAGGTAGACCTTATGATAGATATGATAGCAGAGATAATAGGG
ATATGTATGGTGGACCACCAAGAGATTCCTATCGTTCATCCTATAGAGGCGGGTATGATT
CAAGACCTCATCATGGCGGTAGAGGTGGTTATAGAGATAGCGGTAGTTATCACCATCCTT
ATGGTGGCGGTGGTAGTGGTGGAAGTG
Length of connected seq. 377
Full length Seq ID -
Full length Seq. -
Length of full length seq. -