VFE275
Library VF
(Link to library)
Clone ID VFE275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16521-1
Original site URL
Representative seq. ID VFE275P
(Link to Original site)
Representative DNA sequence
>VFE275 (VFE275Q) /CSM/VF/VFE2-D/VFE275Q.Seq.d/
ACTATCGATGCGCATATAGATTAATAATTCTAACGTTTTTATTGTAGTTTTAATTGACAT
GTGTATTTTAAATAATTATATTATACTTACATTATAGATTATTTGAAATATAAGTTTTAA
AAATAGATTAAAACAAAATATCTGTAAAAAGATATTTTAAATAAAAAATCGTACTTAAAC
CGACACTGGTTAATTGATAGAATATATTAAAGTGTAGAATGAATGATTCTGAAGGAACTC
GGCAAAATAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGTTGTAAAAAATGAAGGTCA
CAGTAAAGAAGGGGTGGCGACTGTTTAATAAAAACACAGGATTCTGCAAAATGGCAACAT
GATGTATAGGGTCTGCGACCTGCCCGGTGCTCCAAGAGGAAGAGGAGAACTGCAAGGTTT
GAATTGAAGTCTGAGTAAACGGCGGCTGXXXXXXXXXXAAAGACCTACAAGTCGATCAGA
GACGCAAGTCGATCATAGTGATCCAATAGTTCTGTGTGGAAAGGCTATTGCTAACGGATA
AAAGGTACGCTAGGGATAACAGGCTAGTCACATATTAGAGTTCATATCTGTTATGTGGTT
CGGCACCTCGATGTCGGCTTAACACATCCCGGAGTTGAAAAAGTTTCCAAGGGTTGGGGT
GTTCACCCATTAAAGTGTTACATGAGCTGGGTTTAAAACGTCGTGAGACAGTTTGGTCCC
TATCTACTGTTAAAAACGAAAAAATTAAAATCCTTCCTTTAGTACGAGAGGACTGAGGTG
GGTCGATCACTGGTGTATTAATTATTATAACAATAGTACCGTTAAGTAGCTACATCGAAA
TATTAATAATATATAGTATTATTAAGAGAGAACTGCTGAAAAAATATTAAGTAGGAAACT
TATTTTAGATTTTTTTATAGTCAGGTAAAAGATTATTACTTTGATAGGCTACATATAGAA
ATGAATAGTAATATAATATAAAAATTTGAAAAAATTTTTCCATTAATTCTATAATTAATG
TNATCTTATTTATTAAGATT
sequence update 2001. 6. 1
Translated Amino Acid sequence
lsmri*innsnvfivvlidmcilnnyiiltl*ii*nisfknrlkqnickkif*iknrt*t
dtg*lieyikv*ne*f*rnsak*lrncgrrrafvvkneghskegvatv**khrilqngnm
myrvcdlpgaprgrgelqgln*SLSKRRL---

---RPTSRSETQVDHSDPIVLCGKAIANG*kvr*g*qashilefisvmwfgtsmsa*hip
elkkfprvgvfth*svt*agfkts*dslvpiyc*krkn*npsfstrglrwvdhwcinyyn
nstvk*lhrninni*yy*ertaekilsrklildffivr*kiitligyi*k*ivi*yknlk
kffh*fyn*cxliy*d


Translated Amino Acid sequence (All Frames)
Frame A:
tidahid**f*rfycsfn*hvyfk*lyytyiidylkykf*k*iktkyl*kdilnkksyln
rhwlidriy*sve*milkelgkitp*lrekeslcckk*rsq*rrggdcliktqdsakwqh
dv*glrparcskrkrrtarfelkse*taa---

---kdlqvdqrrksiiviq*fcverllltdkryardnrlvty*ssyllcgsaprcrlnts
rs*ksfqglgcspikvlhelglkrretvwslstvknekikilplvred*ggsitgvliii
tivplssyieiliiysiikrellkky*vgnlf*ifl*sgkrlll**atyrne**yniki*
knfsinsiinvilfiki

Frame B:
lsmri*innsnvfivvlidmcilnnyiiltl*ii*nisfknrlkqnickkif*iknrt*t
dtg*lieyikv*ne*f*rnsak*lrncgrrrafvvkneghskegvatv**khrilqngnm
myrvcdlpgaprgrgelqgln*SLSKRRL---

---ktyksirdasrs**snssvwkgyc*rikgtlgitg*shirvhicyvvrhldvglthp
gvekvskgwgvhplkcymswv*nvvrqfgpylllktkklksfl*yertevgrslvy*ll*
q*yr*vatsky**yivllrenc*knik*etyfrffysqvkdyyfdrlhiemnsnii*kfe
kifplil*lmxsyllr

Frame C:
yrcayrliiltfll*f*ltcvf*iiilylhyrlfei*vlkid*nkisvkryfk*kivlkp
tlvn**nilkcrmndsegtrqnnsvtagegepll*kmkvtvkkgwrlfnkntgfckmat*
cigsatcpvlqeeeenckv*iev*vngg---

---RPTSRSETQVDHSDPIVLCGKAIANG*kvr*g*qashilefisvmwfgtsmsa*hip
elkkfprvgvfth*svt*agfkts*dslvpiyc*krkn*npsfstrglrwvdhwcinyyn
nstvk*lhrninni*yy*ertaekilsrklildffivr*kiitligyi*k*ivi*yknlk
kffh*fyn*cxliy*d

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE275 (VFE275Q) /CSM/VF/VFE2-D/VFE275Q.Seq.d/ 1057 0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/ 555 e-157
CFA667 (CFA667Q) /CSM/CF/CFA6-C/CFA667Q.Seq.d/ 555 e-157
VHL317 (VHL317Q) /CSM/VH/VHL3-A/VHL317Q.Seq.d/ 541 e-153
SHG307 (SHG307Q) /CSM/SH/SHG3-A/SHG307Q.Seq.d/ 541 e-153
CHF548 (CHF548Q) /CSM/CH/CHF5-B/CHF548Q.Seq.d/ 541 e-153
AFJ856 (AFJ856Q) /CSM/AF/AFJ8-C/AFJ856Q.Seq.d/ 541 e-153
VHO432 (VHO432Q) /CSM/VH/VHO4-B/VHO432Q.Seq.d/ 527 e-148
SHH465 (SHH465Q) /CSM/SH/SHH4-C/SHH465Q.Seq.d/ 527 e-148
SFB625 (SFB625Q) /CSM/SF/SFB6-B/SFB625Q.Seq.d/ 527 e-148

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D16466|D16466.1 Dictyostelium discoideum mitochondrial DNA. 555 0.0 6
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence. 555 0.0 6
U21880|U21880.1 Dictyostelium discoideum mitochondrion large subunit rRNA (rrn) gene, mitochondrial gene encoding mitochondrial rRNA, partial sequence. 555 0.0 2
AF295546|AF295546.1 Malawimonas jakobiformis mitochondrial DNA, complete genome. 139 4e-76 12
U17009|U17009.2 Phytophthora infestans mitochondrion, complete genome. 119 4e-63 10
X71839|X71839.1 R.palustris 16S rRNA gene. 103 5e-60 7
AY309483|AY309483.1 Unknown marine alpha proteobacterium JP57 23S ribosomal RNA gene, partial sequence. 94 7e-59 9
AJ344328|AJ344328.1 Laminaria digitata complete mitochondrial genome. 113 5e-58 10
AF007261|AF007261.1 Reclinomonas americana mitochondrial DNA, complete genome. 127 1e-57 9
AK059254|AK059254.1 Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H06, full insert sequence. 100 2e-57 6
dna update 2003. 9.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017197_194(AE017197|pid:none) Rickettsia typhi str. Wilmington... 71 7e-15
EU754742_1(EU754742|pid:none) Candidatus Liberibacter americanus... 67 5e-14
AP009386_1890(AP009386|pid:none) Burkholderia multivorans ATCC 1... 69 8e-14
CP000789_180(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 chr... 69 1e-12
AE016795_1006(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos... 69 3e-12
CP001172_16(CP001172|pid:none) Acinetobacter baumannii AB307-029... 69 3e-10
CP000155_1516(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 65 4e-09
CP001230_1127(CP001230|pid:none) Persephonella marina EX-H1, com... 62 3e-08
AC151668_11(AC151668|pid:none) Medicago truncatula clone mth2-6e... 62 3e-08
AM085146_13(AM085146|pid:none) Magnetospirillum gryphiswaldense ... 60 6e-08
protein update 2009. 6.18
PSORT

psg: 0.53 gvh: 0.34 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.46 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for VFE275 is mit

5' end seq. ID VFE275F
5' end seq.
>VFE275F.Seq
ACTATCGATGCGCATATAGATTAATAATTCTAACGTTTTTATTGTAGTTTTAATTGACAT
GTGTATTTTAAATAATTATATTATACTTACATTATAGATTATTTGAAATATAAGTTTTAA
AAATAGATTAAAACAAAATATCTGTAAAAAGATATTTTAAATAAAAAATCGTACTTAAAC
CGACACTGGTTAATTGATAGAATATATTAAAGTGTAGAATGAATGATTCTGAAGGAACTC
GGCAAAATAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGTTGTAAAAAATGAAGGTCA
CAGTAAAGAAGGGGTGGCGACTGTTTAATAAAAACACAGGATTCTGCAAAATGGCAACAT
GATGTATAGGGTCTGCGACCTGCCCGGTGCTCCAAGAGGAAGAGGAGAACTGCAAGGTTT
GAATTGAAGTCTGAGTAAACGGCGGCTG----------
Length of 5' end seq. 448
3' end seq. ID VFE275Z
3' end seq.
>VFE275Z.Seq
----------AAAGACCTACAAGTCGATCAGAGACGCAAGTCGATCATAGTGATCCAATA
GTTCTGTGTGGAAAGGCTATTGCTAACGGATAAAAGGTACGCTAGGGATAACAGGCTAGT
CACATATTAGAGTTCATATCTGTTATGTGGTTCGGCACCTCGATGTCGGCTTAACACATC
CCGGAGTTGAAAAAGTTTCCAAGGGTTGGGGTGTTCACCCATTAAAGTGTTACATGAGCT
GGGTTTAAAACGTCGTGAGACAGTTTGGTCCCTATCTACTGTTAAAAACGAAAAAATTAA
AATCCTTCCTTTAGTACGAGAGGACTGAGGTGGGTCGATCACTGGTGTATTAATTATTAT
AACAATAGTACCGTTAAGTAGCTACATCGAAATATTAATAATATATAGTATTATTAAGAG
AGAACTGCTGAAAAAATATTAAGTAGGAAACTTATTTTAGATTTTTTTATAGTCAGGTAA
AAGATTATTACTTTGATAGGCTACATATAGAAATGAATAGTAATATAATATAAAAATTTG
AAAAAATTTTTCCATTAATTCTATAATTAATGTNATCTTATTTATTAAGATT
Length of 3' end seq. 582
Connected seq. ID VFE275P
Connected seq.
>VFE275P.Seq
ACTATCGATGCGCATATAGATTAATAATTCTAACGTTTTTATTGTAGTTTTAATTGACAT
GTGTATTTTAAATAATTATATTATACTTACATTATAGATTATTTGAAATATAAGTTTTAA
AAATAGATTAAAACAAAATATCTGTAAAAAGATATTTTAAATAAAAAATCGTACTTAAAC
CGACACTGGTTAATTGATAGAATATATTAAAGTGTAGAATGAATGATTCTGAAGGAACTC
GGCAAAATAACTCCGTAACTGCGGGAGAAGGAGAGCCTTTGTTGTAAAAAATGAAGGTCA
CAGTAAAGAAGGGGTGGCGACTGTTTAATAAAAACACAGGATTCTGCAAAATGGCAACAT
GATGTATAGGGTCTGCGACCTGCCCGGTGCTCCAAGAGGAAGAGGAGAACTGCAAGGTTT
GAATTGAAGTCTGAGTAAACGGCGGCTG----------AAAGACCTACAAGTCGATCAGA
GACGCAAGTCGATCATAGTGATCCAATAGTTCTGTGTGGAAAGGCTATTGCTAACGGATA
AAAGGTACGCTAGGGATAACAGGCTAGTCACATATTAGAGTTCATATCTGTTATGTGGTT
CGGCACCTCGATGTCGGCTTAACACATCCCGGAGTTGAAAAAGTTTCCAAGGGTTGGGGT
GTTCACCCATTAAAGTGTTACATGAGCTGGGTTTAAAACGTCGTGAGACAGTTTGGTCCC
TATCTACTGTTAAAAACGAAAAAATTAAAATCCTTCCTTTAGTACGAGAGGACTGAGGTG
GGTCGATCACTGGTGTATTAATTATTATAACAATAGTACCGTTAAGTAGCTACATCGAAA
TATTAATAATATATAGTATTATTAAGAGAGAACTGCTGAAAAAATATTAAGTAGGAAACT
TATTTTAGATTTTTTTATAGTCAGGTAAAAGATTATTACTTTGATAGGCTACATATAGAA
ATGAATAGTAATATAATATAAAAATTTGAAAAAATTTTTCCATTAATTCTATAATTAATG
TNATCTTATTTATTAAGATT
Length of connected seq. 1030
Full length Seq ID -
Full length Seq. -
Length of full length seq. -