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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM384
Library AF
(Link to library)
Clone ID AFM384
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM384P
(Link to Original site)
Representative DNA sequence 
>AFM384 (AFM384Q) /CSM/AF/AFM3-D/AFM384Q.Seq.d/
TTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAAT
GAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCA
ATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAAT
ACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAA
GATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAA
GATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTA
CAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAACAA
CAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAATTAATTCACCCGAG
GATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGACTATCATAATGAT
CAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGT
CAATTTGAXXXXXXXXXXAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTG
TAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAAC
AAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCC
AACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAA
TGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATT
TACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAG
CAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTCCAAAGAC
AAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATG
TTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATC
AAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAA
AAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAA
ATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAA
AAAACT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
FNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRN
TLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNL
QEDQEQYELLLDQLYDEQQQQPQKVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHND
QTEELKDDDYNFNDQQINNGQF---

---NGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEV
AFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNV
EQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDEN
LVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsfflkn
Translated Amino Acid sequence (All Frames) 
Frame A:
FNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQSMKSEDLKNLDDEVIRN
TLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLKQEKRANQQELINYELNL
QEDQEQYELLLDQLYDEQQQQPQKVSNKQQLQEQQINSPEDIQYQLNHLNQPFQDDYHND
QTEELKDDDYNFNDQQINNGQF---

---kmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmk
lpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqm
lnnkslnnlklsknskdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmr
i*fkrnnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkiknnliilsf*kt

Frame B:
ltlinntlinptvqfhhkimkklkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fvi
llrkckfnvkikilvnkikkiknn*liykienlvytkinkilnkrkepinkn*simn*iy
kkiknnmnfy*insmmnnnnnhkkfqinnnfknnklihprifnin*ii*inhskmtiimi
klkn*kmmiiilminkltmvnl---

---kw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*s
clfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc
*ttnr*tt*syqripktrstketknstrercclle*c*ksst*igc*ig*k**tresr*e
fssrettis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtkskii*sfflfkk

Frame C:
*l*stih**ilrfnsitr**rn*keitkcsstitrtitcnlsinei*rskkfr**sns*y
s*gnanst*ksrywstksrr*rtin*ftk*rtwfiqkstrs*treksqstrinql*ieft
rrsrti*tfirstl**ttttttksfk*tttsrttn*ftrgysisiksfkstipr*ls**s
n*rikr**l*f**stn*qwsi*---

---NGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEV
AFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNV
EQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDEN
LVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsfflkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM384 (AFM384Q) /CSM/AF/AFM3-D/AFM384Q.Seq.d/                       1776   0.0
CFG652 (CFG652Q) /CSM/CF/CFG6-C/CFG652Q.Seq.d/                       1199   0.0
AFB743 (AFB743Q) /CSM/AF/AFB7-B/AFB743Q.Seq.d/                       1138   0.0
AFE349 (AFE349Q) /CSM/AF/AFE3-C/AFE349Q.Seq.d/                       1130   0.0
AFC366 (AFC366Q) /CSM/AF/AFC3-C/AFC366Q.Seq.d/                       1124   0.0
AFJ569 (AFJ569Q) /CSM/AF/AFJ5-C/AFJ569Q.Seq.d/                       1102   0.0
AHL872 (AHL872Q) /CSM/AH/AHL8-C/AHL872Q.Seq.d/                       1092   0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/                       1086   0.0
SFH333 (SFH333Q) /CSM/SF/SFH3-B/SFH333Q.Seq.d/                       1084   0.0
AFN863 (AFN863Q) /CSM/AF/AFN8-C/AFN863Q.Seq.d/                       1074   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(U25143) Dictyostelium discoideum cAMP-inducible prespore pr...   811   0.0    5
(BJ342093) Dictyostelium discoideum cDNA clone:dda9b13, 3' e...   735   0.0    4
(BJ399296) Dictyostelium discoideum cDNA clone:dds5d12, 3' e...   515   0.0    5
(BJ347013) Dictyostelium discoideum cDNA clone:dda25h21, 3' ...   611   0.0    3
(BJ346684) Dictyostelium discoideum cDNA clone:dda24n15, 3' ...   611   0.0    3
(BJ400887) Dictyostelium discoideum cDNA clone:dds15b09, 3' ...   611   0.0    3
(BJ340176) Dictyostelium discoideum cDNA clone:dda11p22, 3' ...   611   0.0    3
(BJ372453) Dictyostelium discoideum cDNA clone:ddc12m18, 3' ...   611   0.0    3
(BJ400835) Dictyostelium discoideum cDNA clone:dds15d03, 3' ...   611   0.0    3
(BJ385524) Dictyostelium discoideum cDNA clone:ddc55a12, 3' ...   611   0.0    3
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   320   7e-86
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    50   2e-04
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028...    47   0.001
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    47   0.002
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM...    46   0.002
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    45   0.004
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    45   0.004
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    45   0.006
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ...    45   0.006
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir...    45   0.007
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM384 is

5' end seq. ID AFM384F
5' end seq. 
>AFM384F.Seq
TTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAAT
GAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCA
ATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAAT
ACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAA
GATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAA
GATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTA
CAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAACAA
CAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAATTAATTCACCCGAG
GATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGACTATCATAATGAT
CAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGT
CAATTTGAXXXXXXXXXX
Length of 5' end seq. 618
3' end seq. ID AFM384Z
3' end seq. 
>AFM384Z.Seq
XXXXXXXXXXAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAA
ATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAA
CATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAA
GTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAA
TTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAA
CTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAAT
GTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTCCAAAGACAAGATCAA
CAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAA
GCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAG
AATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATT
CAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAA
TTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAAAAAACT
Length of 3' end seq. 718
Connected seq. ID AFM384P
Connected seq. 
>AFM384P.Seq
TTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAAT
GAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCA
ATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAAT
ACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAA
GATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAA
GATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTA
CAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAACAA
CAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAATTAATTCACCCGAG
GATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGACTATCATAATGAT
CAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGT
CAATTTGA----------AAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTG
TAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAAC
AAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCC
AACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAA
TGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATT
TACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAG
CAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTCCAAAGAC
AAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATG
TTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATC
AAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAA
AAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAA
ATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAA
AAAACT
Length of connected seq. 1316
Full length Seq ID -
Full length Seq. -
Length of full length seq. -