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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM381
Library AF
(Link to library)
Clone ID AFM381
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM381P
(Link to Original site)
Representative DNA sequence 
>AFM381 (AFM381Q) /CSM/AF/AFM3-D/AFM381Q.Seq.d/
GTATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAATGCACCAG
GTGCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGGTT
GTTTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGTATTCAAA
CTAAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGAAA
AAGTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACACTG
TCTATTCTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTT
TACCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTA
AATCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATTC
TATTATTGTAAAAAAGAACTAAAATATAATAATAGTTTTTATTTTGTTXXXXXXXXXXGT
ATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAATGCACCAGGT
GCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGGTTGT
TTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGTATTCAAACT
AAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGAAAAA
GTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACACTGTC
TATTCTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTTTA
CCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTAAA
TCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATTCTA
TTATTGTAAAAAAGAACTAAAATAAATAAAGTTTTTA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
vyqiivk*qekl*lkplmhqvllahtvkqllltikfsflvv*vlikilcnshlklmlvfk
lnll*qt*ktllkllvhqwkkllklpsy*nqwmisklltlsillssqlthqldqpllllv
yqrml**klkllqftneprvnqiissiqnyk**IISNSLFYYCKKELKYNNSFYFV---

---ISNYSKMTGKVVVKTTNAPGAIGPYSQAIIANNQVFVSGCLGIDKDTMQFTSETDVS
IQTKLALTNMKNIVEAAGSSMEKVVKTTILLKSMDDFQAVNTVYSTFFPVDPPARSTFAV
ACLPKNALVEIEAIAIHQ*tegksnniinskl*iinnk**filll*krtkinkvf
Translated Amino Acid sequence (All Frames) 
Frame A:
vyqiivk*qekl*lkplmhqvllahtvkqllltikfsflvv*vlikilcnshlklmlvfk
lnll*qt*ktllkllvhqwkkllklpsy*nqwmisklltlsillssqlthqldqpllllv
yqrml**klkllqftneprvnqiissiqnyk**IISNSLFYYCKKELKYNNSFYFV---

---vyqiivk*qekl*lkplmhqvllahtvkqllltikfsflvv*vlikilcnshlklml
vfklnll*qt*ktllkllvhqwkkllklpsy*nqwmisklltlsillssqlthqldqpll
llvyqrml**klkllqftneprvnqiissiqnyk**iisnslfyyckkelk*ikfl

Frame B:
yikl**ndrkscs*nh*ctrcywpiqssnyc*qssfrfwlfry**ryyaihi*n*c*ysn
*tcfnkhekhc*scwfingksc*nyhliking*fpsc*hclfyflps*pts*inlccclf
tkecfsrn*sycnspmnrg*ik*yhqfkiinnk**vivysiivkkn*niiivfil---

---yikl**ndrkscs*nh*ctrcywpiqssnyc*qssfrfwlfry**ryyaihi*n*c*
ysn*tcfnkhekhc*scwfingksc*nyhliking*fpsc*hclfyflps*pts*inlcc
clftkecfsrn*sycnspmnrg*ik*yhqfkiinnk**vivysiivkkn*nk*sf

Frame C:
isnyskmtgkvvvkttnapgaigpysqaiiannqvfvsgclgidkdtmqftsetdvsiqt
klaltnmkniveaagssmekvvkttillksmddfqavntvystffpvdpparstfavacl
pknalveieaiaihq*tegksnniinskl*iinnk**filll*krtki***flfc---

---ISNYSKMTGKVVVKTTNAPGAIGPYSQAIIANNQVFVSGCLGIDKDTMQFTSETDVS
IQTKLALTNMKNIVEAAGSSMEKVVKTTILLKSMDDFQAVNTVYSTFFPVDPPARSTFAV
ACLPKNALVEIEAIAIHQ*tegksnniinskl*iinnk**filll*krtkinkvf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN414 (VFN414Q) /CSM/VF/VFN4-A/VFN414Q.Seq.d/                        837   0.0
AFM381 (AFM381Q) /CSM/AF/AFM3-D/AFM381Q.Seq.d/                        837   0.0
VSI115 (VSI115Q) /CSM/VS/VSI1-A/VSI115Q.Seq.d/                        823   0.0
SSC695 (SSC695Q) /CSM/SS/SSC6-D/SSC695Q.Seq.d/                        823   0.0
SHA718 (SHA718Q) /CSM/SH/SHA7-A/SHA718Q.Seq.d/                        823   0.0
FC-BE13 (FC-BE13Q) /CSM/FC/FC-BE/FC-BE13Q.Seq.d/                      807   0.0
VSF418 (VSF418Q) /CSM/VS/VSF4-A/VSF418Q.Seq.d/                        803   0.0
VSH656 (VSH656Q) /CSM/VS/VSH6-C/VSH656Q.Seq.d/                        735   0.0
VSD732 (VSD732Q) /CSM/VS/VSD7-B/VSD732Q.Seq.d/                        618   e-176
VSJ459 (VSJ459Q) /CSM/VS/VSJ4-C/VSJ459Q.Seq.d/                         38   0.27
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329638) Dictyostelium discoideum cDNA clone:dda25b21, 5' ...   829   0.0    2
(BJ416746) Dictyostelium discoideum cDNA clone:ddv27l04, 5' ...   829   0.0    1
(BJ346982) Dictyostelium discoideum cDNA clone:dda25b21, 3' ...   829   0.0    1
(AU268170) Dictyostelium discoideum vegetative cDNA clone:VS...   821   0.0    1
(BJ391747) Dictyostelium discoideum cDNA clone:dds25d05, 5' ...   815   0.0    1
(AU264482) Dictyostelium discoideum vegetative cDNA clone:VS...   618   0.0    2
(AU264481) Dictyostelium discoideum vegetative cDNA clone:VS...   618   0.0    2
(AU284600) Dictyostelium discoideum gamete cDNA clone:FC-BE1...   799   0.0    1
(AU268171) Dictyostelium discoideum vegetative cDNA clone:VS...   773   0.0    2
(AU265204) Dictyostelium discoideum vegetative cDNA clone:VS...   795   0.0    2
dna update 2009. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001072_955(CP001072|pid:none) Helicobacter pylori Shi470, comp...   132   1e-29
AP008230_1335(AP008230|pid:none) Desulfitobacterium hafniense Y5...   132   2e-29
CP000241_928(CP000241|pid:none) Helicobacter pylori HPAG1, compl...   131   4e-29
(O25598) UPF0076 protein HP_0944.  &AE000511_928(AE000511|pid:no...   130   9e-29
AM260522_1180(AM260522|pid:none) Helicobacter acinonychis str. S...   128   4e-28
AK061373_1(AK061373|pid:none) Oryza sativa Japonica Group cDNA c...   128   4e-28
CP000686_2882(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...   127   8e-28
BT039439_1(BT039439|pid:none) Zea mays full-length cDNA clone ZM...   126   1e-27
CT573071_938(CT573071|pid:none) Kuenenia stuttgartiensis genome ...   125   2e-27
DQ117525_1(DQ117525|pid:none) Cucumis sativus plastid-lipid asso...   125   2e-27
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM381 is

5' end seq. ID AFM381F
5' end seq. 
>AFM381F.Seq
GTATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAATGCACCAG
GTGCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGGTT
GTTTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGTATTCAAA
CTAAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGAAA
AAGTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACACTG
TCTATTCTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTT
TACCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTA
AATCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATTC
TATTATTGTAAAAAAGAACTAAAATATAATAATAGTTTTTATTTTGTTXXXXXXXXXX
Length of 5' end seq. 538
3' end seq. ID AFM381Z
3' end seq. 
>AFM381Z.Seq
XXXXXXXXXXGTATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACT
AATGCACCAGGTGCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTC
GTTTCTGGTTGTTTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTT
AGTATTCAAACTAAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCA
TCAATGGAAAAAGTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCT
GTTAACACTGTCTATTCTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCT
GTTGCTTGTTTACCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGA
ACCGAGGGTAAATCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAA
TAGTTTATTCTATTATTGTAAAAAAGAACTAAAATAAATAAAGTTTTTA
Length of 3' end seq. 529
Connected seq. ID AFM381P
Connected seq. 
>AFM381P.Seq
GTATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAATGCACCAG
GTGCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGGTT
GTTTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGTATTCAAA
CTAAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGAAA
AAGTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACACTG
TCTATTCTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTT
TACCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTA
AATCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATTC
TATTATTGTAAAAAAGAACTAAAATATAATAATAGTTTTTATTTTGTT----------GT
ATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAATGCACCAGGT
GCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGGTTGT
TTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGTATTCAAACT
AAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGAAAAA
GTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACACTGTC
TATTCTACTTTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTTTA
CCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTAAA
TCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATTCTA
TTATTGTAAAAAAGAACTAAAATAAATAAAGTTTTTA
Length of connected seq. 1047
Full length Seq ID -
Full length Seq. -
Length of full length seq. -