VFE242
Library VF
(Link to library)
Clone ID VFE242
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16584-1
Original site URL
Representative seq. ID VFE242P
(Link to Original site)
Representative DNA sequence
>VFE242 (VFE242Q) /CSM/VF/VFE2-B/VFE242Q.Seq.d/
AGTAAGGTATAAAAAAAAAATCATATAAAATGGTAGAAAAAATCATTGTTTCAAATCCAG
TTGCTAATCTTTTAGGTGATGAACAAACCAGAGTTATTTGGGATTTAATTGAAAAGAAAT
TAATTTTTCCATTTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAATTGAGTATCGTG
ATAAAACCAATGATCAAGTTACAATTGATGCAGCCAATGCAATTAAGAGATTAAAAGTTG
GTATTAAATGTGCAACAATTACACCAGACGAAGCACGTGTCACAGAGTTTGGATTGAAGG
AGATGGGGAAATCACCAAATGGTACCATTCGTAATACATTGGGTGGCACATTATTTAGAG
AGCCAATTGTTTGTAAGAATGTCCCACGTTTGGTCACCTGTTGGAATAAATCTATAGTTA
TTGGTCGTCATGCATTTGGTGACCAATACAGAGCCACTGATTTCGTAGTAAAGGGAGCTG
GCAAGTTGGAGTTAACCTACACACCAGCCGACGGCAGTGCACCACAAAAATTCCAAGTCT
TTGACTTCCCATCCGATGGTGGTGTAGCCTTGGGAATGTATAATACCGACGCXXXXXXXX
XXCACAAAGAACACAATTCTCAAGAGATACGACGNCCGTTTCAAAGACATTTTCCAAGAG
ATCTACGAAAGAGAGTACAAAGTTAAATTCGACACTGCCGGTATTTGGTATGAGCATAGA
CTCATCGACGACATGGTCGCCTATGCTATGAAGAGTGAGGGTGGCTTCGTTTGGGCTTGT
AAAAACTATGACGGTGATGTTCAATCAGATGCCGTCGCCCAGGGTTATGGTAGTTTGGGT
CTCATGACTTCAGTTTTACTCTCTGCCGACTCTTTAGTTGCTGAAGCCTCCCATGGTACT
GTCACTAGACATTTCCGTGAACATCAAAAAGGTAGAGAAACCAGTACCAATTCAATCGCT
TCTATCTTTGCTTGGACTCGTGGTCTTGGATATCGTGCTAAATTAGATAACAATGATAAA
TTATTAAAATTCTGTCATGCTCTTGAAGCTTCCTGTATCGATGCTGTTGAATCTGGTTTC
ATGACTAAAGATTTAGCAATTTGTGTTAAAGGTTCAGTTGAAAATGTAAAACGTACAGAC
TACTTAAATACTGAAGAATATATTAATAAGGTTGCCGAATTACTTGTTAGCAAATTAACT
GCATTGTAAGAAATTTTATAAATCTTACTCACTACTACTACCACTACTACTCTACTTCAT
TATTTCGTGTTGCGGTCTATCATTCATTTTTCTCCATAAAAATCTCATTTCTTTTTTTTT
ATGTTCAAAATTAGTAGTAATAAAATAAAATT
sequence update 2001. 6. 1
Translated Amino Acid sequence
*GIKKKSYKMVEKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGIEYRD
KTNDQVTIDAANAIKRLKVGIKCATITPDEARVTEFGLKEMGKSPNGTIRNTLGGTLFRE
PIVCKNVPRLVTCWNKSIVIGRHAFGDQYRATDFVVKGAGKLELTYTPADGSAPQKFQVF
DFPSDGGVALGMYNTD---

---TKNTILKRYDXRFKDIFQEIYEREYKVKFDTAGIWYEHRLIDDMVAYAMKSEGGFVW
ACKNYDGDVQSDAVAQGYGSLGLMTSVLLSADSLVAEASHGTVTRHFREHQKGRETSTNS
IASIFAWTRGLGYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKR
TDYLNTEEYINKVAELLVSKLTAL*eil*illtttttttllhyfvlrsiihfsp*kshff
ffmfkissnkik


Translated Amino Acid sequence (All Frames)
Frame A:
skv*kknhikw*kkslfqiqllif*vmnkpelfgi*lkrn*ffhf*i*klkpmi*elsiv
ikpmiklqlmqpmqlrd*klvlnvqqlhqtkhvsqsld*rrwgnhqmvpfvihwvahyle
sqlfvrmshvwspvginl*llvvmhlvtnteplis**relasws*pthqptavhhknsks
ltshpmvv*pweciipt---

---hkehnsqeirrpfqrhfprdlrkrvqs*irhcrylv*a*thrrhgrlcyee*gwlrl
gl*kl*r*csircrrpglw*fgshdfsftlcrlfsc*slpwych*tfp*tskr*rnqyqf
nrfylcldswswisc*ir*q**iikilscs*sflyrcc*iwfhd*rfsnlc*rfs*kckt
yrllky*riy**gcritc*qincivrnfinlthyyyhyystslfrvavyhsffsikisfl
ffyvqn****nki

Frame B:
vrykkkii*ngrknhcfkssc*sfr**tnqsylgfn*keinfsifrfks*nl*frn*vs*
*nq*ssyn*csqcn*eikswy*mcnnytrrstchrvwiegdgeitkwyhs*yigwhii*r
ancl*ecptfghlle*iysywssciw*piqsh*frskgswqvgvnlhtsrrqcttkipsl
*lpirwwcslgnv*yrr---

---TKNTILKRYDXRFKDIFQEIYEREYKVKFDTAGIWYEHRLIDDMVAYAMKSEGGFVW
ACKNYDGDVQSDAVAQGYGSLGLMTSVLLSADSLVAEASHGTVTRHFREHQKGRETSTNS
IASIFAWTRGLGYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKR
TDYLNTEEYINKVAELLVSKLTAL*eil*illtttttttllhyfvlrsiihfsp*kshff
ffmfkissnkik

Frame C:
*GIKKKSYKMVEKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGIEYRD
KTNDQVTIDAANAIKRLKVGIKCATITPDEARVTEFGLKEMGKSPNGTIRNTLGGTLFRE
PIVCKNVPRLVTCWNKSIVIGRHAFGDQYRATDFVVKGAGKLELTYTPADGSAPQKFQVF
DFPSDGGVALGMYNTD---

---qrtqfsrdttxvsktfskrstkestklnstlpvfgmsidssttwspml*rvrvasfg
lvktmtvmfnqmpsprvmvvwvs*lqfyslptl*llkppmvlsldisvnikkvekpvpiq
sllsllglvvldivln*itminy*nsvmllklpvsmllnlvs*lki*qfvlkvqlkm*nv
qtt*ilknilirlpnyllan*lhckkfyksyslllplllyfiisccglsfiflhknlisf
flcsklvvik*n

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE242 (VFE242Q) /CSM/VF/VFE2-B/VFE242Q.Seq.d/ 2323 0.0
SFG677 (SFG677Q) /CSM/SF/SFG6-D/SFG677Q.Seq.d/ 1221 0.0
VFI567 (VFI567Q) /CSM/VF/VFI5-C/VFI567Q.Seq.d/ 1209 0.0
VFJ466 (VFJ466Q) /CSM/VF/VFJ4-C/VFJ466Q.Seq.d/ 1187 0.0
SFD390 (SFD390Q) /CSM/SF/SFD3-D/SFD390Q.Seq.d/ 1187 0.0
VFJ384 (VFJ384Q) /CSM/VF/VFJ3-D/VFJ384Q.Seq.d/ 1185 0.0
SFI370 (SFI370Q) /CSM/SF/SFI3-C/SFI370Q.Seq.d/ 1176 0.0
AFJ163 (AFJ163Q) /CSM/AF/AFJ1-C/AFJ163Q.Seq.d/ 1176 0.0
SFE851 (SFE851Q) /CSM/SF/SFE8-C/SFE851Q.Seq.d/ 1174 0.0
AFC669 (AFC669Q) /CSM/AF/AFC6-C/AFC669Q.Seq.d/ 1174 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 1021 0.0 12
AU125408|AU125408.1 Homo sapiens cDNA clone:NT2RM4001543, 5' end, expressed in uninduced NT2 neuronal precursor cells. 62 1e-25 6
AF113917|AF113917.1 Homo sapiens NADP+-dependent isocitrate dehydrogenase (PICD) mRNA, complete cds. 62 1e-24 6
BC012846|BC012846.1 Homo sapiens, clone MGC:21176 IMAGE:3880331, mRNA, complete cds. 62 1e-24 6
AL136702|AL136702.1 Homo sapiens mRNA; cDNA DKFZp566J151 (from clone DKFZp566J151); complete cds. 62 1e-24 6
AF020038|AF020038.1 Homo sapiens NADP-dependent isocitrate dehydrogenase (IDH) mRNA, complete cds. 62 1e-24 6
BD206259|BD206259.1 Human nucleic acid sequence originating in endometrial tumor tissue. 62 1e-24 6
AX013078|AX013078.1 Sequence 18 from Patent WO9954461. 62 1e-24 6
BG402787|BG402787.1 602418457F1 NIH_MGC_93 Homo sapiens cDNA clone IMAGE:4525359 5', mRNA sequence. 62 2e-23 5
BQ716989|BQ716989.1 AGENCOURT_8241281 Lupski_sympathetic_trunk Homo sapiens cDNA clone IMAGE:6187214 5', mRNA sequence. 62 2e-23 5
dna update 2003. 9.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q75JR3) RecName: Full=Isocitrate dehydrogenase [NADP] cytoplasm... 394 0.0
(Q75JR2) RecName: Full=Isocitrate dehydrogenase [NADP], mitochon... 309 e-151
DQ886272_1(DQ886272|pid:none) Gryllus firmus isocitrate dehydrog... 291 e-146
BT077406_1(BT077406|pid:none) Lepeophtheirus salmonis clone lsal... 295 e-146
(P41562) RecName: Full=Isocitrate dehydrogenase [NADP] cytoplasm... 289 e-146
BT080533_1(BT080533|pid:none) Caligus clemensi clone ccle-evs-50... 295 e-146
BC082651_1(BC082651|pid:none) Xenopus laevis hypothetical LOC494... 288 e-146
DQ311191_1(DQ311191|pid:none) Bombyx mori isocitrate dehydrogena... 297 e-145
(Q9Z2K9) RecName: Full=Isocitrate dehydrogenase [NADP] cytoplasm... 288 e-145
CR376856_2(CR376856|pid:none) Zebrafish DNA sequence from clone ... 290 e-145
protein update 2009. 6.18
PSORT

psg: 0.74 gvh: 0.35 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
20.0 %: cytoskeletal

>> prediction for VFE242 is cyt

5' end seq. ID VFE242F
5' end seq.
>VFE242F.Seq
AGTAAGGTATAAAAAAAAAATCATATAAAATGGTAGAAAAAATCATTGTTTCAAATCCAG
TTGCTAATCTTTTAGGTGATGAACAAACCAGAGTTATTTGGGATTTAATTGAAAAGAAAT
TAATTTTTCCATTTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAATTGAGTATCGTG
ATAAAACCAATGATCAAGTTACAATTGATGCAGCCAATGCAATTAAGAGATTAAAAGTTG
GTATTAAATGTGCAACAATTACACCAGACGAAGCACGTGTCACAGAGTTTGGATTGAAGG
AGATGGGGAAATCACCAAATGGTACCATTCGTAATACATTGGGTGGCACATTATTTAGAG
AGCCAATTGTTTGTAAGAATGTCCCACGTTTGGTCACCTGTTGGAATAAATCTATAGTTA
TTGGTCGTCATGCATTTGGTGACCAATACAGAGCCACTGATTTCGTAGTAAAGGGAGCTG
GCAAGTTGGAGTTAACCTACACACCAGCCGACGGCAGTGCACCACAAAAATTCCAAGTCT
TTGACTTCCCATCCGATGGTGGTGTAGCCTTGGGAATGTATAATACCGACGC--------
--
Length of 5' end seq. 592
3' end seq. ID VFE242Z
3' end seq.
>VFE242Z.Seq
----------CACAAAGAACACAATTCTCAAGAGATACGACGNCCGTTTCAAAGACATTT
TCCAAGAGATCTACGAAAGAGAGTACAAAGTTAAATTCGACACTGCCGGTATTTGGTATG
AGCATAGACTCATCGACGACATGGTCGCCTATGCTATGAAGAGTGAGGGTGGCTTCGTTT
GGGCTTGTAAAAACTATGACGGTGATGTTCAATCAGATGCCGTCGCCCAGGGTTATGGTA
GTTTGGGTCTCATGACTTCAGTTTTACTCTCTGCCGACTCTTTAGTTGCTGAAGCCTCCC
ATGGTACTGTCACTAGACATTTCCGTGAACATCAAAAAGGTAGAGAAACCAGTACCAATT
CAATCGCTTCTATCTTTGCTTGGACTCGTGGTCTTGGATATCGTGCTAAATTAGATAACA
ATGATAAATTATTAAAATTCTGTCATGCTCTTGAAGCTTCCTGTATCGATGCTGTTGAAT
CTGGTTTCATGACTAAAGATTTAGCAATTTGTGTTAAAGGTTCAGTTGAAAATGTAAAAC
GTACAGACTACTTAAATACTGAAGAATATATTAATAAGGTTGCCGAATTACTTGTTAGCA
AATTAACTGCATTGTAAGAAATTTTATAAATCTTACTCACTACTACTACCACTACTACTC
TACTTCATTATTTCGTGTTGCGGTCTATCATTCATTTTTCTCCATAAAAATCTCATTTCT
TTTTTTTTATGTTCAAAATTAGTAGTAATAAAATAAAATT
Length of 3' end seq. 750
Connected seq. ID VFE242P
Connected seq.
>VFE242P.Seq
AGTAAGGTATAAAAAAAAAATCATATAAAATGGTAGAAAAAATCATTGTTTCAAATCCAG
TTGCTAATCTTTTAGGTGATGAACAAACCAGAGTTATTTGGGATTTAATTGAAAAGAAAT
TAATTTTTCCATTTTTAGATTTAAAAGTTGAAACCTATGATTTAGGAATTGAGTATCGTG
ATAAAACCAATGATCAAGTTACAATTGATGCAGCCAATGCAATTAAGAGATTAAAAGTTG
GTATTAAATGTGCAACAATTACACCAGACGAAGCACGTGTCACAGAGTTTGGATTGAAGG
AGATGGGGAAATCACCAAATGGTACCATTCGTAATACATTGGGTGGCACATTATTTAGAG
AGCCAATTGTTTGTAAGAATGTCCCACGTTTGGTCACCTGTTGGAATAAATCTATAGTTA
TTGGTCGTCATGCATTTGGTGACCAATACAGAGCCACTGATTTCGTAGTAAAGGGAGCTG
GCAAGTTGGAGTTAACCTACACACCAGCCGACGGCAGTGCACCACAAAAATTCCAAGTCT
TTGACTTCCCATCCGATGGTGGTGTAGCCTTGGGAATGTATAATACCGACGC--------
--CACAAAGAACACAATTCTCAAGAGATACGACGNCCGTTTCAAAGACATTTTCCAAGAG
ATCTACGAAAGAGAGTACAAAGTTAAATTCGACACTGCCGGTATTTGGTATGAGCATAGA
CTCATCGACGACATGGTCGCCTATGCTATGAAGAGTGAGGGTGGCTTCGTTTGGGCTTGT
AAAAACTATGACGGTGATGTTCAATCAGATGCCGTCGCCCAGGGTTATGGTAGTTTGGGT
CTCATGACTTCAGTTTTACTCTCTGCCGACTCTTTAGTTGCTGAAGCCTCCCATGGTACT
GTCACTAGACATTTCCGTGAACATCAAAAAGGTAGAGAAACCAGTACCAATTCAATCGCT
TCTATCTTTGCTTGGACTCGTGGTCTTGGATATCGTGCTAAATTAGATAACAATGATAAA
TTATTAAAATTCTGTCATGCTCTTGAAGCTTCCTGTATCGATGCTGTTGAATCTGGTTTC
ATGACTAAAGATTTAGCAATTTGTGTTAAAGGTTCAGTTGAAAATGTAAAACGTACAGAC
TACTTAAATACTGAAGAATATATTAATAAGGTTGCCGAATTACTTGTTAGCAAATTAACT
GCATTGTAAGAAATTTTATAAATCTTACTCACTACTACTACCACTACTACTCTACTTCAT
TATTTCGTGTTGCGGTCTATCATTCATTTTTCTCCATAAAAATCTCATTTCTTTTTTTTT
ATGTTCAAAATTAGTAGTAATAAAATAAAATT
Length of connected seq. 1342
Full length Seq ID -
Full length Seq. -
Length of full length seq. -